Wall clock time and date at job start Tue Mar 31 2020 16:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.47248 * 2 1 4 4 C 1.35428 * 116.99688 * 179.97438 * 3 2 1 5 5 N 1.32231 * 119.80286 * 359.97438 * 4 3 2 6 6 C 1.31878 * 121.80195 * 180.02562 * 5 4 3 7 7 C 1.50698 * 119.40650 * 180.02562 * 6 5 4 8 8 C 1.38357 * 121.18839 * 0.02562 * 6 5 4 9 9 C 1.38342 * 119.45316 * 359.73683 * 8 6 5 10 10 C 1.39992 * 118.34788 * 0.50246 * 9 8 6 11 11 C 1.47527 * 120.59502 * 179.77947 * 10 9 8 12 12 O 1.21588 * 119.99952 * 179.71945 * 11 10 9 13 13 N 1.34777 * 119.99927 * 359.71616 * 11 10 9 14 14 C 1.46500 * 119.99995 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.46596 * 35.00583 * 14 13 11 16 16 C 1.50696 * 109.47188 * 155.00083 * 14 13 11 17 17 H 1.08003 * 120.00087 * 0.02562 * 16 14 13 18 18 C 1.37880 * 120.00316 * 179.97438 * 16 14 13 19 19 N 1.31515 * 119.99571 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00268 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46870 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46997 * 120.00180 * 20 18 16 23 23 H 1.48501 * 109.47364 * 240.00504 * 20 18 16 24 24 C 1.52997 * 109.47473 * 275.00486 * 14 13 11 25 25 F 1.39905 * 109.47157 * 59.99740 * 24 14 13 26 26 F 1.39900 * 109.47010 * 300.00131 * 24 14 13 27 27 F 1.39897 * 109.47422 * 179.97438 * 24 14 13 28 28 H 1.08999 * 109.46946 * 300.00700 * 1 2 3 29 29 H 1.08999 * 109.46810 * 60.00342 * 1 2 3 30 30 H 1.08995 * 109.47293 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46946 * 239.99300 * 2 1 3 32 32 H 1.08999 * 109.46810 * 119.99658 * 2 1 3 33 33 H 1.09008 * 109.47166 * 90.00424 * 7 6 5 34 34 H 1.09002 * 109.47081 * 210.00110 * 7 6 5 35 35 H 1.09000 * 109.47329 * 330.00300 * 7 6 5 36 36 H 1.07996 * 120.27426 * 180.02562 * 8 6 5 37 37 H 1.07997 * 120.82686 * 180.25626 * 9 8 6 38 38 H 0.96995 * 120.00034 * 0.02562 * 13 11 10 39 39 H 0.97003 * 119.99476 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3490 1.5246 0.0005 5 7 4.1508 0.4731 0.0015 6 6 5.4635 0.6001 0.0026 7 6 6.3264 -0.6354 0.0031 8 6 6.0627 1.8472 0.0032 9 6 5.2715 2.9820 -0.0028 10 6 3.8807 2.8227 0.0015 11 6 2.9902 3.9989 0.0003 12 8 1.7837 3.8480 -0.0012 13 7 3.5140 5.2407 0.0008 14 6 2.6297 6.4087 -0.0009 15 1 1.7383 6.1904 0.5872 16 6 3.3521 7.5866 0.6004 17 1 4.3685 7.4764 0.9487 18 6 2.7160 8.8054 0.7051 19 7 1.4785 8.9398 0.2805 20 14 3.6117 10.2657 1.4499 21 1 4.9828 9.8556 1.8462 22 1 3.6926 11.3597 0.4490 23 1 2.8721 10.7427 2.6459 24 6 2.2239 6.7391 -1.4386 25 9 1.5532 5.6456 -1.9969 26 9 3.3680 7.0193 -2.1934 27 9 1.3790 7.8541 -1.4402 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 6.5353 -0.9331 -1.0245 34 1 7.2637 -0.4237 0.5178 35 1 5.8044 -1.4429 0.5164 36 1 7.1392 1.9340 0.0037 37 1 5.7158 3.9664 -0.0066 38 1 4.4765 5.3611 0.0017 39 1 1.0309 9.7972 0.3545 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928804924.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:37 Heat of formation + Delta-G solvation = -199.117442 kcal Electronic energy + Delta-G solvation = -29600.079060 eV Core-core repulsion = 24900.038500 eV Total energy + Delta-G solvation = -4700.040560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.43502 -48.07069 -47.74311 -41.98421 -40.16212 -39.20354 -36.49666 -34.73862 -34.00257 -33.22851 -31.88147 -30.47827 -28.62266 -26.60791 -25.01807 -24.39616 -23.37640 -23.15390 -21.58177 -19.86237 -19.25043 -18.90762 -18.69157 -18.51736 -17.81461 -17.41216 -17.26243 -16.76693 -16.15018 -15.72657 -15.46383 -15.23866 -15.06192 -15.02905 -14.94948 -14.63120 -14.48451 -14.33212 -14.16606 -14.02001 -13.95291 -13.80732 -13.50931 -13.30081 -13.08065 -12.99396 -12.84172 -12.71676 -12.65489 -12.45774 -12.19797 -11.68382 -11.56033 -11.15424 -10.95339 -10.70140 -10.61782 -10.10571 -9.45418 -8.21158 -6.52554 -0.36296 0.22856 1.47053 1.47939 1.61265 1.84366 1.99189 2.12165 2.38862 2.51053 2.77137 2.94621 3.11508 3.65808 3.72139 3.79572 3.84993 3.89519 4.03793 4.10781 4.15968 4.26284 4.34108 4.40685 4.71225 4.78991 4.84476 4.88801 4.89345 4.95901 5.02357 5.17382 5.19001 5.37658 5.51102 5.54250 5.64214 6.25820 6.51967 6.64730 6.77506 7.16323 7.32893 8.72056 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.003892 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.163832 B = 7192.071869 C = 8114.843089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 O -0.302 6.302 4 C 0.358 3.642 5 N -0.556 5.556 6 C 0.183 3.817 7 C -0.103 4.103 8 C -0.206 4.206 9 C -0.002 4.002 10 C -0.241 4.241 11 C 0.550 3.450 12 O -0.559 6.559 13 N -0.701 5.701 14 C 0.253 3.747 15 H 0.045 0.955 16 C -0.559 4.559 17 H 0.096 0.904 18 C 0.013 3.987 19 N -0.876 5.876 20 Si 0.986 3.014 21 H -0.252 1.252 22 H -0.281 1.281 23 H -0.279 1.279 24 C 0.414 3.586 25 F -0.221 7.221 26 F -0.202 7.202 27 F -0.150 7.150 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.188 0.812 37 H 0.168 0.832 38 H 0.411 0.589 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.847 -16.586 0.344 20.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.207 6.207 4 C 0.178 3.822 5 N -0.282 5.282 6 C 0.046 3.954 7 C -0.160 4.160 8 C -0.225 4.225 9 C -0.027 4.027 10 C -0.248 4.248 11 C 0.338 3.662 12 O -0.438 6.438 13 N -0.353 5.353 14 C 0.146 3.854 15 H 0.063 0.937 16 C -0.596 4.596 17 H 0.114 0.886 18 C -0.192 4.192 19 N -0.510 5.510 20 Si 0.809 3.191 21 H -0.175 1.175 22 H -0.207 1.207 23 H -0.204 1.204 24 C 0.357 3.643 25 F -0.203 7.203 26 F -0.183 7.183 27 F -0.131 7.131 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.129 0.871 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.096 0.904 36 H 0.205 0.795 37 H 0.186 0.814 38 H 0.249 0.751 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.169 -17.193 0.296 19.977 hybrid contribution 0.153 1.761 -0.217 1.781 sum 10.322 -15.432 0.079 18.566 Atomic orbital electron populations 1.21819 0.91938 1.04113 1.02606 1.22869 0.96005 0.80164 1.02605 1.86551 1.16620 1.31775 1.85769 1.19942 0.84616 0.88979 0.88613 1.67369 1.07238 1.31453 1.22189 1.22044 0.88244 0.97553 0.87605 1.20951 0.98196 0.92051 1.04763 1.22188 1.03383 0.90743 1.06212 1.22016 0.89570 1.02111 0.89000 1.20013 0.95577 0.91065 1.18120 1.18446 0.87949 0.83570 0.76188 1.90786 1.16304 1.86369 1.50327 1.45753 1.10834 1.04229 1.74476 1.19336 0.93406 0.86012 0.86629 0.93682 1.21254 1.01662 0.93234 1.43452 0.88631 1.26045 0.95939 1.02306 0.94881 1.70554 1.12618 1.26284 1.41532 0.85072 0.79057 0.77330 0.77622 1.17534 1.20694 1.20445 1.23312 0.74536 0.74265 0.92163 1.93068 1.82033 1.56751 1.88443 1.92981 1.51884 1.93941 1.79542 1.93376 1.71672 1.51800 1.96262 0.92646 0.92836 0.87125 0.91185 0.91003 0.88370 0.87141 0.90408 0.79466 0.81435 0.75093 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 10.28 71.98 0.74 -2.78 16 2 C 0.06 1.60 6.03 71.98 0.43 2.03 16 3 O -0.30 -11.44 8.22 -66.42 -0.55 -11.99 16 4 C 0.36 12.43 7.51 85.13 0.64 13.07 16 5 N -0.56 -15.36 9.11 -296.07 -2.70 -18.06 16 6 C 0.18 3.63 6.78 42.58 0.29 3.92 16 7 C -0.10 -1.05 10.16 71.24 0.72 -0.33 16 8 C -0.21 -3.59 9.71 22.32 0.22 -3.37 16 9 C 0.00 -0.04 9.64 22.72 0.22 0.18 16 10 C -0.24 -8.42 5.90 -19.91 -0.12 -8.54 16 11 C 0.55 24.30 7.30 86.69 0.63 24.93 16 12 O -0.56 -29.62 13.77 16.82 0.23 -29.39 16 13 N -0.70 -29.91 4.94 -449.29 -2.22 -32.13 16 14 C 0.25 13.12 2.21 44.24 0.10 13.22 16 15 H 0.05 2.71 7.58 -2.39 -0.02 2.69 16 16 C -0.56 -28.41 8.47 25.60 0.22 -28.19 16 17 H 0.10 4.40 7.74 -2.91 -0.02 4.38 16 18 C 0.01 0.70 5.20 84.66 0.44 1.14 16 19 N -0.88 -49.18 9.50 21.45 0.20 -48.98 16 20 Si 0.99 40.44 29.54 68.60 2.03 42.46 16 21 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 22 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 24 C 0.41 22.16 2.81 71.98 0.20 22.37 16 25 F -0.22 -12.05 15.68 44.97 0.70 -11.35 16 26 F -0.20 -10.06 16.94 44.97 0.76 -9.30 16 27 F -0.15 -8.67 12.91 44.97 0.58 -8.09 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 1.76 8.11 -2.39 -0.02 1.74 16 32 H 0.07 1.78 8.10 -2.39 -0.02 1.76 16 33 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.11 0.51 8.07 -2.39 -0.02 0.49 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.19 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.17 3.16 6.51 -2.91 -0.02 3.14 16 38 H 0.41 14.26 6.64 -92.71 -0.62 13.65 16 39 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -74.70 343.74 4.28 -70.42 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.50 Total: 18.74 kcal Atomic # 6 Polarization: 32.92 SS G_CDS: 4.73 Total: 37.65 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -4.71 Total: -99.17 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -0.31 Total: -41.37 kcal Atomic # 9 Polarization: -30.79 SS G_CDS: 2.05 Total: -28.74 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.46 kcal Total: -74.70 4.28 -70.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804924.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.694 kcal (2) G-P(sol) polarization free energy of solvation -74.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds