Wall clock time and date at job start Tue Mar 31 2020 16:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42892 * 109.47196 * 2 1 4 4 C 1.35434 * 116.99888 * 179.97438 * 3 2 1 5 5 N 1.32229 * 119.79834 * 0.02562 * 4 3 2 6 6 C 1.31884 * 121.80177 * 179.97438 * 5 4 3 7 7 C 1.50703 * 119.40825 * 179.97438 * 6 5 4 8 8 C 1.38353 * 121.18321 * 0.27319 * 6 5 4 9 9 C 1.38340 * 119.45528 * 359.45688 * 8 6 5 10 10 C 1.39982 * 118.34940 * 0.52740 * 9 8 6 11 11 C 1.47531 * 120.59660 * 179.71351 * 10 9 8 12 12 O 1.21586 * 120.00164 * 180.02562 * 11 10 9 13 13 N 1.34781 * 119.99573 * 0.02562 * 11 10 9 14 14 C 1.46506 * 119.99369 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47034 * 324.99663 * 14 13 11 16 16 C 1.50706 * 109.46716 * 205.00274 * 14 13 11 17 17 H 1.08003 * 120.00075 * 359.97438 * 16 14 13 18 18 C 1.37868 * 119.99764 * 180.02562 * 16 14 13 19 19 N 1.31516 * 120.00475 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99933 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47187 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47186 * 119.99705 * 20 18 16 23 23 H 1.48497 * 109.47248 * 239.99746 * 20 18 16 24 24 C 1.52998 * 109.47187 * 85.00321 * 14 13 11 25 25 F 1.39898 * 109.47081 * 59.99389 * 24 14 13 26 26 F 1.39897 * 109.46894 * 179.97438 * 24 14 13 27 27 F 1.39902 * 109.46964 * 299.99702 * 24 14 13 28 28 H 1.09003 * 109.47112 * 59.99403 * 1 2 3 29 29 H 1.08998 * 109.47777 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46701 * 300.00024 * 1 2 3 31 31 H 1.09003 * 109.46701 * 239.99976 * 2 1 3 32 32 H 1.08996 * 109.46757 * 120.00487 * 2 1 3 33 33 H 1.09002 * 109.47152 * 89.99927 * 7 6 5 34 34 H 1.09001 * 109.46980 * 330.00028 * 7 6 5 35 35 H 1.09004 * 109.47113 * 210.00009 * 7 6 5 36 36 H 1.08000 * 120.26943 * 179.72714 * 8 6 5 37 37 H 1.08002 * 120.82121 * 180.26677 * 9 8 6 38 38 H 0.96999 * 120.00030 * 0.02562 * 13 11 10 39 39 H 0.96994 * 120.00525 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3490 1.5246 0.0005 5 7 4.1508 0.4731 0.0005 6 6 5.4635 0.6001 0.0005 7 6 6.3264 -0.6355 0.0011 8 6 6.0626 1.8471 0.0062 9 6 5.2714 2.9820 0.0006 10 6 3.8807 2.8227 0.0005 11 6 2.9902 3.9989 0.0010 12 8 1.7837 3.8480 0.0014 13 7 3.5141 5.2407 0.0009 14 6 2.6297 6.4087 0.0019 15 1 1.7388 6.1904 -0.5869 16 6 3.3527 7.5867 -0.5989 17 1 4.3693 7.4764 -0.9463 18 6 2.7166 8.8053 -0.7041 19 7 1.4788 8.9398 -0.2806 20 14 3.6130 10.2656 -1.4481 21 1 4.9844 9.8556 -1.8433 22 1 2.8742 10.7425 -2.6448 23 1 3.6930 11.3597 -0.4472 24 6 2.2228 6.7391 1.4393 25 9 3.3663 7.0192 2.1950 26 9 1.3788 7.8548 1.4403 27 9 1.5517 5.6456 1.9970 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 6.5345 -0.9338 -1.0264 34 1 5.8048 -1.4427 0.5153 35 1 7.2641 -0.4235 0.5149 36 1 7.1391 1.9339 0.0106 37 1 5.7158 3.9663 0.0005 38 1 4.4766 5.3610 0.0002 39 1 1.0314 9.7973 -0.3542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928804925.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:41 Heat of formation + Delta-G solvation = -177.140770 kcal Electronic energy + Delta-G solvation = -29599.097676 eV Core-core repulsion = 24900.010096 eV Total energy + Delta-G solvation = -4699.087580 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.32299 -45.97619 -45.59001 -40.83342 -38.55836 -38.09106 -34.63383 -33.32661 -32.53076 -32.11692 -30.90830 -28.81959 -27.45527 -24.58682 -23.87184 -23.21649 -22.26331 -21.50106 -19.93228 -18.44211 -17.84505 -16.97251 -16.68682 -16.59577 -16.47402 -16.25228 -15.53957 -14.93085 -14.65012 -14.53195 -14.43030 -13.98627 -13.84710 -13.49926 -13.00946 -12.95465 -12.87526 -12.63268 -12.53791 -12.41209 -12.36876 -12.27576 -12.22981 -11.95267 -11.92069 -11.78994 -11.42967 -11.18090 -10.87351 -10.78669 -10.66729 -10.40430 -9.92457 -9.86112 -9.63606 -9.15523 -8.72799 -8.43793 -8.19297 -6.23543 -4.47630 0.74943 1.25166 3.06187 3.17447 3.22817 3.25170 3.28171 3.70846 4.00299 4.09297 4.21962 4.58960 4.59946 4.86846 4.93630 5.00009 5.05100 5.07659 5.16390 5.33541 5.34560 5.36568 5.43989 5.67983 5.75897 5.83255 5.88256 5.89341 5.89462 6.01920 6.14690 6.23948 6.36329 6.95063 7.17560 7.34898 7.47033 7.62986 7.77327 8.32275 8.50273 8.90666 9.20280 10.68122 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.003892 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.089707 B = 7192.209990 C = 8114.813026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.265 6.265 4 C 0.377 3.623 5 N -0.549 5.549 6 C 0.183 3.817 7 C -0.105 4.105 8 C -0.221 4.221 9 C -0.006 4.006 10 C -0.204 4.204 11 C 0.553 3.447 12 O -0.510 6.510 13 N -0.709 5.709 14 C 0.246 3.754 15 H 0.087 0.913 16 C -0.551 4.551 17 H 0.078 0.922 18 C 0.065 3.935 19 N -0.839 5.839 20 Si 0.915 3.085 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.417 3.583 25 F -0.210 7.210 26 F -0.137 7.137 27 F -0.216 7.216 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.395 0.605 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.068 -15.455 0.086 17.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.169 6.169 4 C 0.197 3.803 5 N -0.275 5.275 6 C 0.045 3.955 7 C -0.163 4.163 8 C -0.242 4.242 9 C -0.032 4.032 10 C -0.210 4.210 11 C 0.338 3.662 12 O -0.385 6.385 13 N -0.360 5.360 14 C 0.141 3.859 15 H 0.104 0.896 16 C -0.588 4.588 17 H 0.096 0.904 18 C -0.144 4.144 19 N -0.472 5.472 20 Si 0.742 3.258 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.206 1.206 24 C 0.361 3.639 25 F -0.192 7.192 26 F -0.118 7.118 27 F -0.198 7.198 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.159 0.841 37 H 0.165 0.835 38 H 0.229 0.771 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.341 -16.034 0.137 17.243 hybrid contribution 1.256 1.568 0.020 2.009 sum 7.596 -14.466 0.157 16.340 Atomic orbital electron populations 1.21785 0.92888 1.02260 1.03992 1.22650 0.95219 0.81533 1.01948 1.86589 1.15429 1.29416 1.85471 1.19757 0.84526 0.88322 0.87743 1.67252 1.05946 1.32612 1.21651 1.21106 0.88850 0.95229 0.90279 1.20782 0.97943 0.94215 1.03333 1.21687 1.01401 0.92224 1.08867 1.21703 0.91324 0.99993 0.90193 1.20220 0.94355 0.92766 1.13708 1.17798 0.87888 0.82722 0.77747 1.90827 1.13947 1.85654 1.48105 1.45957 1.10480 1.05157 1.74396 1.19737 0.93984 0.84385 0.87816 0.89567 1.20902 1.00928 0.93265 1.43751 0.90417 1.25082 0.95305 0.99333 0.94679 1.70413 1.10935 1.25609 1.40238 0.86160 0.79602 0.81296 0.78769 1.19409 1.20561 1.20575 1.23122 0.74579 0.74746 0.91498 1.92983 1.52535 1.94003 1.79657 1.93403 1.71218 1.51012 1.96147 1.93079 1.81830 1.56582 1.88351 0.91408 0.90682 0.91377 0.91870 0.91878 0.90008 0.90377 0.90255 0.84109 0.83514 0.77053 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.28 37.16 0.38 -1.38 16 2 C 0.06 0.83 6.03 37.16 0.22 1.05 16 3 O -0.26 -4.77 8.22 -39.76 -0.33 -5.10 16 4 C 0.38 6.45 7.51 -16.62 -0.12 6.32 16 5 N -0.55 -7.92 9.11 -9.21 -0.08 -8.01 16 6 C 0.18 2.12 6.78 -82.53 -0.56 1.56 16 7 C -0.11 -0.78 10.16 36.01 0.37 -0.41 16 8 C -0.22 -2.40 9.71 -39.50 -0.38 -2.78 16 9 C -0.01 -0.08 9.64 -38.89 -0.37 -0.46 16 10 C -0.20 -3.54 5.90 -104.69 -0.62 -4.15 16 11 C 0.55 11.74 7.30 -12.47 -0.09 11.65 16 12 O -0.51 -12.65 13.77 -16.48 -0.23 -12.88 16 13 N -0.71 -14.86 4.94 -55.97 -0.28 -15.14 16 14 C 0.25 6.18 2.21 -69.08 -0.15 6.03 16 15 H 0.09 2.42 7.58 -51.93 -0.39 2.03 16 16 C -0.55 -14.01 8.47 -34.44 -0.29 -14.30 16 17 H 0.08 1.85 7.74 -52.48 -0.41 1.44 16 18 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 19 N -0.84 -23.02 9.50 55.43 0.53 -22.49 16 20 Si 0.92 19.98 29.54 -169.99 -5.02 14.96 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 24 C 0.42 10.84 2.81 37.16 0.10 10.95 16 25 F -0.21 -5.22 16.94 2.25 0.04 -5.18 16 26 F -0.14 -3.82 12.91 2.25 0.03 -3.79 16 27 F -0.22 -5.66 15.68 2.25 0.04 -5.62 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 32 H 0.06 0.79 8.10 -51.93 -0.42 0.36 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.42 8.07 -51.93 -0.42 0.00 16 36 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.15 1.60 6.52 -52.49 -0.34 1.26 16 38 H 0.39 6.99 6.64 -40.82 -0.27 6.71 16 39 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 343.74 15.07 5.18 5.18 Total: -1.00 -32.34 343.74 -6.08 -38.43 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.34 Total: 3.97 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: -1.61 Total: 15.67 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.17 Total: -45.64 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.55 Total: -17.97 kcal Atomic # 9 Polarization: -14.69 SS G_CDS: 0.10 Total: -14.59 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.34 -6.08 -38.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804925.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.714 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds