Wall clock time and date at job start Tue Mar 31 2020 16:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42892 * 109.47196 * 2 1 4 4 C 1.35434 * 116.99888 * 179.97438 * 3 2 1 5 5 N 1.32229 * 119.79834 * 0.02562 * 4 3 2 6 6 C 1.31884 * 121.80177 * 179.97438 * 5 4 3 7 7 C 1.50703 * 119.40825 * 179.97438 * 6 5 4 8 8 C 1.38353 * 121.18321 * 0.27319 * 6 5 4 9 9 C 1.38340 * 119.45528 * 359.45688 * 8 6 5 10 10 C 1.39982 * 118.34940 * 0.52740 * 9 8 6 11 11 C 1.47531 * 120.59660 * 179.71351 * 10 9 8 12 12 O 1.21586 * 120.00164 * 180.02562 * 11 10 9 13 13 N 1.34781 * 119.99573 * 0.02562 * 11 10 9 14 14 C 1.46506 * 119.99369 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47034 * 324.99663 * 14 13 11 16 16 C 1.50706 * 109.46716 * 205.00274 * 14 13 11 17 17 H 1.08003 * 120.00075 * 359.97438 * 16 14 13 18 18 C 1.37868 * 119.99764 * 180.02562 * 16 14 13 19 19 N 1.31516 * 120.00475 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99933 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47187 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47186 * 119.99705 * 20 18 16 23 23 H 1.48497 * 109.47248 * 239.99746 * 20 18 16 24 24 C 1.52998 * 109.47187 * 85.00321 * 14 13 11 25 25 F 1.39898 * 109.47081 * 59.99389 * 24 14 13 26 26 F 1.39897 * 109.46894 * 179.97438 * 24 14 13 27 27 F 1.39902 * 109.46964 * 299.99702 * 24 14 13 28 28 H 1.09003 * 109.47112 * 59.99403 * 1 2 3 29 29 H 1.08998 * 109.47777 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46701 * 300.00024 * 1 2 3 31 31 H 1.09003 * 109.46701 * 239.99976 * 2 1 3 32 32 H 1.08996 * 109.46757 * 120.00487 * 2 1 3 33 33 H 1.09002 * 109.47152 * 89.99927 * 7 6 5 34 34 H 1.09001 * 109.46980 * 330.00028 * 7 6 5 35 35 H 1.09004 * 109.47113 * 210.00009 * 7 6 5 36 36 H 1.08000 * 120.26943 * 179.72714 * 8 6 5 37 37 H 1.08002 * 120.82121 * 180.26677 * 9 8 6 38 38 H 0.96999 * 120.00030 * 0.02562 * 13 11 10 39 39 H 0.96994 * 120.00525 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3490 1.5246 0.0005 5 7 4.1508 0.4731 0.0005 6 6 5.4635 0.6001 0.0005 7 6 6.3264 -0.6355 0.0011 8 6 6.0626 1.8471 0.0062 9 6 5.2714 2.9820 0.0006 10 6 3.8807 2.8227 0.0005 11 6 2.9902 3.9989 0.0010 12 8 1.7837 3.8480 0.0014 13 7 3.5141 5.2407 0.0009 14 6 2.6297 6.4087 0.0019 15 1 1.7388 6.1904 -0.5869 16 6 3.3527 7.5867 -0.5989 17 1 4.3693 7.4764 -0.9463 18 6 2.7166 8.8053 -0.7041 19 7 1.4788 8.9398 -0.2806 20 14 3.6130 10.2656 -1.4481 21 1 4.9844 9.8556 -1.8433 22 1 2.8742 10.7425 -2.6448 23 1 3.6930 11.3597 -0.4472 24 6 2.2228 6.7391 1.4393 25 9 3.3663 7.0192 2.1950 26 9 1.3788 7.8548 1.4403 27 9 1.5517 5.6456 1.9970 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 6.5345 -0.9338 -1.0264 34 1 5.8048 -1.4427 0.5153 35 1 7.2641 -0.4235 0.5149 36 1 7.1391 1.9339 0.0106 37 1 5.7158 3.9663 0.0005 38 1 4.4766 5.3610 0.0002 39 1 1.0314 9.7973 -0.3542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928804925.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:40 Heat of formation + Delta-G solvation = -199.089953 kcal Electronic energy + Delta-G solvation = -29600.049464 eV Core-core repulsion = 24900.010096 eV Total energy + Delta-G solvation = -4700.039368 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.43484 -48.07090 -47.74269 -41.98431 -40.16183 -39.20373 -36.49623 -34.73866 -34.00243 -33.22863 -31.88120 -30.47783 -28.62265 -26.60847 -25.01787 -24.39611 -23.37624 -23.15381 -21.58150 -19.86223 -19.25014 -18.90720 -18.69136 -18.51731 -17.81458 -17.41230 -17.26242 -16.76696 -16.14803 -15.73698 -15.46117 -15.21680 -15.07297 -15.02923 -14.95018 -14.63915 -14.48449 -14.33160 -14.16428 -14.01807 -13.94681 -13.81113 -13.50947 -13.30064 -13.08361 -12.98908 -12.84800 -12.71249 -12.65525 -12.45751 -12.19837 -11.68345 -11.56010 -11.15440 -10.95328 -10.70111 -10.61750 -10.10570 -9.45438 -8.21090 -6.52545 -0.36276 0.22863 1.47042 1.47945 1.61249 1.84440 1.99143 2.12103 2.38827 2.51176 2.77158 2.94631 3.11506 3.65794 3.72117 3.79529 3.85023 3.89567 4.03785 4.10817 4.16042 4.26321 4.34120 4.40689 4.71166 4.78990 4.84530 4.88829 4.89339 4.95864 5.02368 5.17389 5.18983 5.37649 5.51085 5.54217 5.64207 6.25836 6.51968 6.64734 6.77504 7.16364 7.32901 8.72130 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.003892 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.089707 B = 7192.209990 C = 8114.813026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 O -0.302 6.302 4 C 0.358 3.642 5 N -0.556 5.556 6 C 0.183 3.817 7 C -0.103 4.103 8 C -0.206 4.206 9 C -0.002 4.002 10 C -0.241 4.241 11 C 0.550 3.450 12 O -0.559 6.559 13 N -0.701 5.701 14 C 0.253 3.747 15 H 0.045 0.955 16 C -0.559 4.559 17 H 0.096 0.904 18 C 0.014 3.986 19 N -0.876 5.876 20 Si 0.986 3.014 21 H -0.252 1.252 22 H -0.279 1.279 23 H -0.281 1.281 24 C 0.414 3.586 25 F -0.202 7.202 26 F -0.150 7.150 27 F -0.221 7.221 28 H 0.054 0.946 29 H 0.110 0.890 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.188 0.812 37 H 0.168 0.832 38 H 0.411 0.589 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.847 -16.587 -0.388 20.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.207 6.207 4 C 0.178 3.822 5 N -0.283 5.283 6 C 0.046 3.954 7 C -0.160 4.160 8 C -0.225 4.225 9 C -0.027 4.027 10 C -0.248 4.248 11 C 0.338 3.662 12 O -0.438 6.438 13 N -0.353 5.353 14 C 0.146 3.854 15 H 0.063 0.937 16 C -0.596 4.596 17 H 0.114 0.886 18 C -0.192 4.192 19 N -0.510 5.510 20 Si 0.809 3.191 21 H -0.175 1.175 22 H -0.204 1.204 23 H -0.207 1.207 24 C 0.357 3.643 25 F -0.184 7.184 26 F -0.131 7.131 27 F -0.203 7.203 28 H 0.074 0.926 29 H 0.129 0.871 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.128 0.872 36 H 0.205 0.795 37 H 0.186 0.814 38 H 0.249 0.751 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.169 -17.194 -0.338 19.979 hybrid contribution 0.153 1.761 0.193 1.779 sum 10.321 -15.432 -0.144 18.566 Atomic orbital electron populations 1.21820 0.91939 1.04113 1.02605 1.22866 0.96004 0.80168 1.02603 1.86550 1.16621 1.31773 1.85773 1.19942 0.84615 0.88980 0.88615 1.67370 1.07239 1.31454 1.22189 1.22046 0.88243 0.97554 0.87607 1.20952 0.98169 0.92037 1.04800 1.22187 1.03384 0.90744 1.06212 1.22014 0.89570 1.02112 0.88999 1.20011 0.95578 0.91066 1.18115 1.18447 0.87948 0.83570 0.76187 1.90785 1.16304 1.86368 1.50325 1.45757 1.10833 1.04229 1.74479 1.19340 0.93402 0.86012 0.86635 0.93679 1.21254 1.01626 0.93239 1.43475 0.88628 1.26039 0.95936 1.02305 0.94881 1.70548 1.12613 1.26278 1.41557 0.85074 0.79058 0.77337 0.77623 1.17534 1.20448 1.20696 1.23311 0.74543 0.74268 0.92153 1.92980 1.51934 1.93940 1.79498 1.93376 1.71739 1.51732 1.96259 1.93067 1.82019 1.56740 1.88461 0.92644 0.87124 0.92838 0.91001 0.91191 0.88283 0.90450 0.87186 0.79466 0.81431 0.75090 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 10.28 71.98 0.74 -2.79 16 2 C 0.06 1.60 6.03 71.98 0.43 2.03 16 3 O -0.30 -11.44 8.22 -66.48 -0.55 -11.99 16 4 C 0.36 12.43 7.51 85.13 0.64 13.07 16 5 N -0.56 -15.36 9.11 -296.06 -2.70 -18.06 16 6 C 0.18 3.63 6.78 42.58 0.29 3.92 16 7 C -0.10 -1.05 10.16 71.24 0.72 -0.33 16 8 C -0.21 -3.59 9.71 22.32 0.22 -3.37 16 9 C 0.00 -0.04 9.64 22.72 0.22 0.18 16 10 C -0.24 -8.42 5.90 -19.91 -0.12 -8.53 16 11 C 0.55 24.30 7.30 86.69 0.63 24.93 16 12 O -0.56 -29.61 13.77 16.83 0.23 -29.38 16 13 N -0.70 -29.91 4.94 -449.26 -2.22 -32.13 16 14 C 0.25 13.12 2.21 44.25 0.10 13.22 16 15 H 0.05 2.71 7.58 -2.39 -0.02 2.69 16 16 C -0.56 -28.40 8.47 25.60 0.22 -28.18 16 17 H 0.10 4.40 7.74 -2.91 -0.02 4.38 16 18 C 0.01 0.70 5.20 84.65 0.44 1.14 16 19 N -0.88 -49.19 9.50 21.44 0.20 -48.98 16 20 Si 0.99 40.43 29.54 68.60 2.03 42.46 16 21 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 22 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 24 C 0.41 22.16 2.81 71.98 0.20 22.37 16 25 F -0.20 -10.07 16.94 44.97 0.76 -9.31 16 26 F -0.15 -8.67 12.91 44.97 0.58 -8.09 16 27 F -0.22 -12.05 15.68 44.97 0.70 -11.34 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.78 8.10 -2.39 -0.02 1.76 16 32 H 0.07 1.76 8.10 -2.39 -0.02 1.74 16 33 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.11 0.51 8.07 -2.38 -0.02 0.50 16 36 H 0.19 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.17 3.16 6.52 -2.91 -0.02 3.14 16 38 H 0.41 14.26 6.64 -92.71 -0.62 13.64 16 39 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -74.70 343.74 4.28 -70.42 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.50 Total: 18.74 kcal Atomic # 6 Polarization: 32.93 SS G_CDS: 4.73 Total: 37.66 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -4.71 Total: -99.17 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -0.31 Total: -41.37 kcal Atomic # 9 Polarization: -30.79 SS G_CDS: 2.05 Total: -28.74 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -74.70 4.28 -70.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804925.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.669 kcal (2) G-P(sol) polarization free energy of solvation -74.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds