Wall clock time and date at job start Tue Mar 31 2020 16:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36011 * 117.00120 * 2 1 4 4 C 1.38504 * 120.07825 * 0.02562 * 3 2 1 5 5 C 1.38278 * 120.01678 * 180.02562 * 4 3 2 6 6 C 1.38258 * 120.18274 * 359.97438 * 5 4 3 7 7 C 1.38222 * 120.15769 * 359.97438 * 6 5 4 8 8 C 1.38726 * 119.98242 * 0.02562 * 7 6 5 9 9 N 1.39959 * 120.08929 * 180.02562 * 8 7 6 10 10 C 1.46496 * 120.00498 * 0.02562 * 9 8 7 11 11 C 1.50693 * 109.47632 * 180.02562 * 10 9 8 12 12 O 1.21278 * 120.00024 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00421 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00278 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.46978 * 35.00384 * 14 13 11 16 16 C 1.50696 * 109.46779 * 154.99892 * 14 13 11 17 17 H 1.08006 * 120.00170 * 114.76755 * 16 14 13 18 18 C 1.37878 * 120.00512 * 294.76482 * 16 14 13 19 19 N 1.31512 * 120.00407 * 184.89892 * 18 16 14 20 20 Si 1.86797 * 119.99640 * 4.89639 * 18 16 14 21 21 H 1.48504 * 109.47193 * 84.90905 * 20 18 16 22 22 H 1.48500 * 109.47242 * 204.90566 * 20 18 16 23 23 H 1.48505 * 109.47242 * 324.90851 * 20 18 16 24 24 C 1.53001 * 109.47172 * 275.00029 * 14 13 11 25 25 F 1.39899 * 109.47091 * 65.01281 * 24 14 13 26 26 F 1.39895 * 109.47110 * 185.01492 * 24 14 13 27 27 F 1.39898 * 109.47285 * 305.01537 * 24 14 13 28 28 H 1.09006 * 109.47162 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46953 * 299.99561 * 1 2 3 30 30 H 1.08992 * 109.47680 * 59.99780 * 1 2 3 31 31 H 1.08002 * 119.99002 * 359.97438 * 4 3 2 32 32 H 1.08005 * 119.91039 * 180.02562 * 5 4 3 33 33 H 1.08000 * 119.91745 * 180.02562 * 6 5 4 34 34 H 1.07998 * 120.00857 * 179.74511 * 7 6 5 35 35 H 0.97007 * 119.99693 * 180.02562 * 9 8 7 36 36 H 1.09004 * 109.46685 * 300.00434 * 10 9 8 37 37 H 1.08998 * 109.46850 * 59.99374 * 10 9 8 38 38 H 0.97004 * 119.99783 * 0.02562 * 13 11 10 39 39 H 0.97000 * 120.00166 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2937 2.3745 0.0005 5 6 1.9229 3.6059 0.0000 6 6 3.3034 3.6811 -0.0005 7 6 4.0618 2.5256 0.0000 8 6 3.4376 1.2867 0.0005 9 7 4.2034 0.1151 0.0016 10 6 5.6661 0.1960 0.0027 11 6 6.2463 -1.1947 0.0031 12 8 5.5104 -2.1587 0.0030 13 7 7.5829 -1.3674 0.0047 14 6 8.1469 -2.7196 0.0056 15 1 7.5105 -3.3790 -0.5845 16 6 9.5293 -2.6875 -0.5933 17 1 10.3881 -2.9242 0.0174 18 6 9.6980 -2.3561 -1.9210 19 7 10.8920 -2.4215 -2.4685 20 14 8.2306 -1.8144 -2.9421 21 1 8.0060 -0.3587 -2.7525 22 1 8.4964 -2.0915 -4.3766 23 1 7.0229 -2.5622 -2.5089 24 6 8.2255 -3.2383 1.4428 25 9 6.9331 -3.3763 1.9602 26 9 8.8681 -4.4809 1.4555 27 9 8.9474 -2.3321 2.2269 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 0.2151 2.3193 0.0005 32 1 1.3342 4.5114 0.0008 33 1 3.7903 4.6451 -0.0005 34 1 5.1400 2.5871 -0.0046 35 1 3.7655 -0.7505 0.0016 36 1 6.0012 0.7289 -0.8872 37 1 5.9998 0.7296 0.8927 38 1 8.1716 -0.5964 0.0059 39 1 11.0107 -2.1879 -3.4025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928815475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:52 Heat of formation + Delta-G solvation = -196.602288 kcal Electronic energy + Delta-G solvation = -28942.874449 eV Core-core repulsion = 24242.942954 eV Total energy + Delta-G solvation = -4699.931494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.15551 -46.66902 -46.63782 -40.31259 -39.33084 -37.50596 -35.49821 -34.75523 -32.61527 -30.51892 -30.18536 -29.12328 -27.31434 -26.19571 -25.08681 -22.37002 -21.94597 -21.21061 -20.06899 -18.60583 -18.18810 -17.63661 -17.33596 -16.98437 -16.53891 -16.25210 -15.96853 -15.84444 -15.41533 -15.07887 -14.80726 -14.41898 -14.14015 -13.77464 -13.55860 -13.49147 -13.38086 -13.22550 -13.10623 -12.93352 -12.83959 -12.74103 -12.66318 -12.45331 -12.19903 -11.78599 -11.51400 -11.21269 -11.17948 -11.07980 -10.75496 -10.30380 -10.16126 -9.94366 -9.63946 -9.05207 -8.61817 -8.59282 -7.19056 -6.57336 -4.71840 1.35046 1.55014 2.84876 2.98766 3.11098 3.19000 3.23083 3.27665 3.74935 3.80690 3.86777 4.04215 4.74137 4.77532 4.87062 4.88155 5.01027 5.01467 5.02924 5.12634 5.16227 5.30039 5.34279 5.37102 5.39372 5.41813 5.53121 5.72002 6.08535 6.28605 6.31001 6.54561 6.70667 6.80226 6.92622 7.01479 7.47966 7.75606 7.87566 8.10413 8.44173 8.59146 8.95772 10.50911 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.014641 B = 0.003547 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.010695 B = 7891.898403 C = 8632.538391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.319 6.319 3 C 0.052 3.948 4 C -0.163 4.163 5 C -0.149 4.149 6 C -0.103 4.103 7 C -0.175 4.175 8 C 0.204 3.796 9 N -0.728 5.728 10 C 0.101 3.899 11 C 0.494 3.506 12 O -0.532 6.532 13 N -0.713 5.713 14 C 0.204 3.796 15 H 0.093 0.907 16 C -0.539 4.539 17 H 0.096 0.904 18 C 0.097 3.903 19 N -0.860 5.860 20 Si 0.878 3.122 21 H -0.270 1.270 22 H -0.286 1.286 23 H -0.258 1.258 24 C 0.443 3.557 25 F -0.193 7.193 26 F -0.183 7.183 27 F -0.190 7.190 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.417 0.583 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.403 0.597 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.268 10.529 3.817 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.233 6.233 3 C 0.003 3.997 4 C -0.182 4.182 5 C -0.169 4.169 6 C -0.122 4.122 7 C -0.198 4.198 8 C 0.100 3.900 9 N -0.361 5.361 10 C -0.027 4.027 11 C 0.279 3.721 12 O -0.409 6.409 13 N -0.367 5.367 14 C 0.102 3.898 15 H 0.111 0.889 16 C -0.577 4.577 17 H 0.114 0.886 18 C -0.113 4.113 19 N -0.493 5.493 20 Si 0.704 3.296 21 H -0.196 1.196 22 H -0.213 1.213 23 H -0.182 1.182 24 C 0.387 3.613 25 F -0.175 7.175 26 F -0.164 7.164 27 F -0.171 7.171 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.142 0.858 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.256 0.744 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.240 0.760 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.365 9.629 3.678 18.502 hybrid contribution -0.685 0.497 -0.372 0.924 sum -16.050 10.126 3.306 19.263 Atomic orbital electron populations 1.22964 0.78713 1.03656 1.00884 1.86039 1.21002 1.26499 1.89765 1.18450 0.90279 0.84963 1.05964 1.20953 0.99392 0.91897 1.05964 1.20647 0.94548 0.96588 1.05151 1.20793 0.93657 0.97611 1.00146 1.20549 0.99982 0.90177 1.09083 1.17210 0.87156 0.87568 0.98101 1.44299 1.03372 1.06747 1.81728 1.21153 0.82280 0.95939 1.03355 1.20716 0.83828 0.90862 0.76652 1.90678 1.59285 1.41691 1.49231 1.47561 1.05479 1.10848 1.72804 1.20327 0.99037 0.83274 0.87207 0.88935 1.20796 0.89595 1.50710 0.96586 0.88597 1.24921 0.96163 0.93157 0.97075 1.69860 1.22178 1.43362 1.13894 0.86842 0.83238 0.80019 0.79469 1.19583 1.21266 1.18185 1.21427 0.72521 0.75611 0.91708 1.93152 1.39216 1.95814 1.89316 1.93115 1.82149 1.44109 1.97031 1.93084 1.78585 1.67674 1.77788 0.88491 0.92992 0.93000 0.85765 0.86398 0.86088 0.85358 0.74393 0.89476 0.89185 0.75987 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.26 9.74 -19.77 -0.19 -4.45 16 3 C 0.05 0.69 6.70 -39.08 -0.26 0.43 16 4 C -0.16 -1.80 9.04 -39.47 -0.36 -2.15 16 5 C -0.15 -1.53 10.04 -39.56 -0.40 -1.93 16 6 C -0.10 -1.09 10.04 -39.58 -0.40 -1.49 16 7 C -0.17 -2.12 9.31 -39.41 -0.37 -2.48 16 8 C 0.20 2.87 6.67 -83.57 -0.56 2.31 16 9 N -0.73 -11.21 5.70 -59.67 -0.34 -11.55 16 10 C 0.10 1.47 5.40 -5.20 -0.03 1.45 16 11 C 0.49 9.22 7.10 -10.99 -0.08 9.14 16 12 O -0.53 -11.55 14.24 5.56 0.08 -11.47 16 13 N -0.71 -13.72 2.88 -54.94 -0.16 -13.88 16 14 C 0.20 4.55 1.42 -69.08 -0.10 4.45 16 15 H 0.09 2.21 6.52 -51.93 -0.34 1.87 16 16 C -0.54 -13.44 8.65 -34.44 -0.30 -13.74 16 17 H 0.10 2.62 7.95 -52.48 -0.42 2.20 16 18 C 0.10 2.45 5.47 -17.82 -0.10 2.35 16 19 N -0.86 -23.25 13.96 55.43 0.77 -22.47 16 20 Si 0.88 19.63 25.78 -169.99 -4.38 15.24 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.26 -5.99 6.57 56.52 0.37 -5.62 16 24 C 0.44 9.54 2.79 37.16 0.10 9.65 16 25 F -0.19 -4.16 15.83 2.25 0.04 -4.12 16 26 F -0.18 -4.02 16.86 2.25 0.04 -3.98 16 27 F -0.19 -3.95 16.97 2.25 0.04 -3.91 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 30 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 31 H 0.12 1.07 6.30 -52.49 -0.33 0.74 16 32 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.13 1.37 6.74 -52.49 -0.35 1.01 16 35 H 0.42 7.12 6.80 -40.82 -0.28 6.85 16 36 H 0.09 1.16 7.95 -51.93 -0.41 0.74 16 37 H 0.09 1.10 7.96 -51.93 -0.41 0.69 16 38 H 0.40 6.91 8.58 -40.82 -0.35 6.56 16 39 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 341.89 15.07 5.15 5.15 Total: -1.00 -29.57 341.89 -4.92 -34.50 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -4.12 Total: 11.68 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -1.84 Total: 9.27 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.27 Total: -47.90 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.11 Total: -15.92 kcal Atomic # 9 Polarization: -12.13 SS G_CDS: 0.11 Total: -12.02 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.38 Total: 15.24 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.57 -4.92 -34.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928815475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.106 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds