Wall clock time and date at job start Tue Mar 31 2020 16:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36011 * 117.00120 * 2 1 4 4 C 1.38504 * 120.07825 * 0.02562 * 3 2 1 5 5 C 1.38278 * 120.01678 * 180.02562 * 4 3 2 6 6 C 1.38258 * 120.18274 * 359.97438 * 5 4 3 7 7 C 1.38222 * 120.15769 * 359.97438 * 6 5 4 8 8 C 1.38726 * 119.98242 * 0.02562 * 7 6 5 9 9 N 1.39959 * 120.08929 * 180.02562 * 8 7 6 10 10 C 1.46496 * 120.00498 * 0.02562 * 9 8 7 11 11 C 1.50693 * 109.47632 * 180.02562 * 10 9 8 12 12 O 1.21278 * 120.00024 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00421 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00278 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.46978 * 35.00384 * 14 13 11 16 16 C 1.50696 * 109.46779 * 154.99892 * 14 13 11 17 17 H 1.08006 * 120.00170 * 114.76755 * 16 14 13 18 18 C 1.37878 * 120.00512 * 294.76482 * 16 14 13 19 19 N 1.31512 * 120.00407 * 184.89892 * 18 16 14 20 20 Si 1.86797 * 119.99640 * 4.89639 * 18 16 14 21 21 H 1.48504 * 109.47193 * 84.90905 * 20 18 16 22 22 H 1.48500 * 109.47242 * 204.90566 * 20 18 16 23 23 H 1.48505 * 109.47242 * 324.90851 * 20 18 16 24 24 C 1.53001 * 109.47172 * 275.00029 * 14 13 11 25 25 F 1.39899 * 109.47091 * 65.01281 * 24 14 13 26 26 F 1.39895 * 109.47110 * 185.01492 * 24 14 13 27 27 F 1.39898 * 109.47285 * 305.01537 * 24 14 13 28 28 H 1.09006 * 109.47162 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46953 * 299.99561 * 1 2 3 30 30 H 1.08992 * 109.47680 * 59.99780 * 1 2 3 31 31 H 1.08002 * 119.99002 * 359.97438 * 4 3 2 32 32 H 1.08005 * 119.91039 * 180.02562 * 5 4 3 33 33 H 1.08000 * 119.91745 * 180.02562 * 6 5 4 34 34 H 1.07998 * 120.00857 * 179.74511 * 7 6 5 35 35 H 0.97007 * 119.99693 * 180.02562 * 9 8 7 36 36 H 1.09004 * 109.46685 * 300.00434 * 10 9 8 37 37 H 1.08998 * 109.46850 * 59.99374 * 10 9 8 38 38 H 0.97004 * 119.99783 * 0.02562 * 13 11 10 39 39 H 0.97000 * 120.00166 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2937 2.3745 0.0005 5 6 1.9229 3.6059 0.0000 6 6 3.3034 3.6811 -0.0005 7 6 4.0618 2.5256 0.0000 8 6 3.4376 1.2867 0.0005 9 7 4.2034 0.1151 0.0016 10 6 5.6661 0.1960 0.0027 11 6 6.2463 -1.1947 0.0031 12 8 5.5104 -2.1587 0.0030 13 7 7.5829 -1.3674 0.0047 14 6 8.1469 -2.7196 0.0056 15 1 7.5105 -3.3790 -0.5845 16 6 9.5293 -2.6875 -0.5933 17 1 10.3881 -2.9242 0.0174 18 6 9.6980 -2.3561 -1.9210 19 7 10.8920 -2.4215 -2.4685 20 14 8.2306 -1.8144 -2.9421 21 1 8.0060 -0.3587 -2.7525 22 1 8.4964 -2.0915 -4.3766 23 1 7.0229 -2.5622 -2.5089 24 6 8.2255 -3.2383 1.4428 25 9 6.9331 -3.3763 1.9602 26 9 8.8681 -4.4809 1.4555 27 9 8.9474 -2.3321 2.2269 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 0.2151 2.3193 0.0005 32 1 1.3342 4.5114 0.0008 33 1 3.7903 4.6451 -0.0005 34 1 5.1400 2.5871 -0.0046 35 1 3.7655 -0.7505 0.0016 36 1 6.0012 0.7289 -0.8872 37 1 5.9998 0.7296 0.8927 38 1 8.1716 -0.5964 0.0059 39 1 11.0107 -2.1879 -3.4025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928815475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:51 Heat of formation + Delta-G solvation = -216.356191 kcal Electronic energy + Delta-G solvation = -28943.731042 eV Core-core repulsion = 24242.942954 eV Total energy + Delta-G solvation = -4700.788088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.92327 -48.43576 -48.40088 -41.29302 -40.72104 -38.39166 -36.94441 -36.05684 -34.49713 -31.85923 -31.01119 -30.45036 -28.06749 -27.33122 -26.97035 -23.56208 -23.02798 -22.51467 -21.51434 -20.14709 -19.46667 -19.32515 -18.76778 -18.43613 -18.28910 -17.43226 -17.23414 -16.78818 -16.63994 -16.35864 -16.07715 -15.56282 -15.32663 -15.31478 -15.05653 -14.93896 -14.87351 -14.74543 -14.60952 -14.56511 -14.52219 -14.25338 -14.02454 -13.69069 -13.35516 -12.95462 -12.89033 -12.57965 -12.30703 -12.14233 -11.93746 -11.90287 -11.84009 -11.27500 -11.10091 -10.91884 -10.26767 -9.43663 -8.54278 -8.14944 -6.73179 0.51346 0.69320 1.22566 1.28456 1.40358 1.48016 1.77690 2.05967 2.18045 2.38156 2.63487 2.94410 2.96363 3.12437 3.31666 3.40965 3.75476 3.95193 4.14424 4.25300 4.31772 4.32619 4.41125 4.43462 4.49872 4.57748 4.69892 4.73403 4.92184 4.93952 5.24714 5.29072 5.49476 5.73039 5.84891 5.92338 6.08585 6.40825 6.46981 6.62133 6.78029 6.97694 7.09583 8.58013 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.014641 B = 0.003547 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.010695 B = 7891.898403 C = 8632.538391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.348 6.348 3 C 0.031 3.969 4 C -0.166 4.166 5 C -0.146 4.146 6 C -0.107 4.107 7 C -0.179 4.179 8 C 0.174 3.826 9 N -0.742 5.742 10 C 0.111 3.889 11 C 0.493 3.507 12 O -0.564 6.564 13 N -0.710 5.710 14 C 0.214 3.786 15 H 0.077 0.923 16 C -0.542 4.542 17 H 0.065 0.935 18 C 0.062 3.938 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.237 1.237 22 H -0.290 1.290 23 H -0.273 1.273 24 C 0.446 3.554 25 F -0.191 7.191 26 F -0.187 7.187 27 F -0.183 7.183 28 H 0.107 0.893 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.405 0.595 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.417 0.583 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.078 13.305 3.828 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.263 6.263 3 C -0.017 4.017 4 C -0.185 4.185 5 C -0.166 4.166 6 C -0.126 4.126 7 C -0.202 4.202 8 C 0.071 3.929 9 N -0.376 5.376 10 C -0.016 4.016 11 C 0.280 3.720 12 O -0.443 6.443 13 N -0.365 5.365 14 C 0.110 3.890 15 H 0.095 0.905 16 C -0.580 4.580 17 H 0.083 0.917 18 C -0.144 4.144 19 N -0.537 5.537 20 Si 0.754 3.246 21 H -0.160 1.160 22 H -0.217 1.217 23 H -0.198 1.198 24 C 0.390 3.610 25 F -0.173 7.173 26 F -0.169 7.169 27 F -0.165 7.165 28 H 0.125 0.875 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.165 0.835 34 H 0.159 0.841 35 H 0.242 0.758 36 H 0.125 0.875 37 H 0.135 0.865 38 H 0.255 0.745 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.181 12.475 3.704 21.553 hybrid contribution -0.209 -0.363 -0.301 0.515 sum -17.390 12.112 3.403 21.464 Atomic orbital electron populations 1.23209 0.76827 1.04848 1.02044 1.86000 1.23150 1.27104 1.89999 1.18766 0.90546 0.85691 1.06687 1.21268 1.00521 0.91516 1.05218 1.21068 0.94899 0.97291 1.03349 1.21163 0.93964 0.98246 0.99191 1.20828 1.00903 0.89950 1.08543 1.17533 0.87670 0.87672 0.99989 1.44288 1.03403 1.06728 1.83154 1.21166 0.82119 0.92844 1.05501 1.21364 0.82929 0.92393 0.75265 1.90669 1.59866 1.43332 1.50402 1.47106 1.06316 1.09880 1.73170 1.19893 0.97343 0.84565 0.87245 0.90542 1.20713 0.89830 1.50865 0.96587 0.91713 1.25487 0.98057 0.93040 0.97850 1.69944 1.24049 1.45145 1.14538 0.86034 0.79528 0.81387 0.77649 1.16033 1.21689 1.19831 1.21301 0.72598 0.75525 0.91567 1.93158 1.39067 1.95806 1.89238 1.93105 1.82264 1.44452 1.97049 1.93093 1.78452 1.67400 1.77556 0.87455 0.91729 0.91804 0.83689 0.83659 0.83480 0.84086 0.75844 0.87550 0.86457 0.74460 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 113.37 1.11 1.52 16 2 O -0.35 -9.11 9.74 -93.67 -0.91 -10.02 16 3 C 0.03 0.79 6.70 22.59 0.15 0.94 16 4 C -0.17 -3.26 9.04 22.34 0.20 -3.05 16 5 C -0.15 -2.49 10.04 22.28 0.22 -2.26 16 6 C -0.11 -1.89 10.04 22.27 0.22 -1.67 16 7 C -0.18 -3.86 9.31 22.38 0.21 -3.65 16 8 C 0.17 4.63 6.67 38.22 0.25 4.88 16 9 N -0.74 -22.03 5.70 -342.71 -1.95 -23.99 16 10 C 0.11 2.99 5.40 85.63 0.46 3.45 16 11 C 0.49 17.72 7.10 87.66 0.62 18.34 16 12 O -0.56 -24.32 14.24 -3.02 -0.04 -24.36 16 13 N -0.71 -26.41 2.88 -446.11 -1.29 -27.69 16 14 C 0.21 9.53 1.42 44.24 0.06 9.59 16 15 H 0.08 3.69 6.52 -2.39 -0.02 3.67 16 16 C -0.54 -27.36 8.65 25.60 0.22 -27.14 16 17 H 0.06 3.64 7.95 -2.91 -0.02 3.61 16 18 C 0.06 3.14 5.47 84.66 0.46 3.60 16 19 N -0.90 -49.30 13.96 21.45 0.30 -49.00 16 20 Si 0.93 39.92 25.78 68.60 1.77 41.69 16 21 H -0.24 -8.84 7.11 99.48 0.71 -8.14 16 22 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.27 -12.41 6.57 99.48 0.65 -11.76 16 24 C 0.45 19.18 2.79 71.98 0.20 19.38 16 25 F -0.19 -8.15 15.83 44.97 0.71 -7.44 16 26 F -0.19 -8.33 16.86 44.97 0.76 -7.57 16 27 F -0.18 -7.53 16.97 44.97 0.76 -6.76 16 28 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.06 0.85 7.66 -2.39 -0.02 0.83 16 30 H 0.06 0.85 7.66 -2.39 -0.02 0.83 16 31 H 0.15 2.09 6.30 -2.91 -0.02 2.07 16 32 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 33 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.14 2.53 6.74 -2.91 -0.02 2.51 16 35 H 0.40 13.86 6.80 -92.70 -0.63 13.23 16 36 H 0.11 2.46 7.95 -2.38 -0.02 2.44 16 37 H 0.12 2.50 7.96 -2.39 -0.02 2.48 16 38 H 0.42 13.45 8.58 -92.71 -0.80 12.65 16 39 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -64.64 341.89 4.17 -60.47 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: -0.35 Total: 30.74 kcal Atomic # 6 Polarization: 19.52 SS G_CDS: 4.41 Total: 23.93 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -2.94 Total: -100.68 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.96 Total: -34.38 kcal Atomic # 9 Polarization: -24.01 SS G_CDS: 2.23 Total: -21.78 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 1.77 Total: 41.69 kcal Total: -64.64 4.17 -60.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928815475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.887 kcal (2) G-P(sol) polarization free energy of solvation -64.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds