Wall clock time and date at job start Tue Mar 31 2020 16:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 120.00271 * 2 1 4 4 C 1.50697 * 109.47338 * 270.00352 * 3 2 1 5 5 C 1.38166 * 120.02933 * 259.99751 * 4 3 2 6 6 C 1.38243 * 120.05707 * 179.97438 * 5 4 3 7 7 C 1.38290 * 120.11298 * 0.02562 * 6 5 4 8 8 C 1.38132 * 120.05257 * 0.02562 * 7 6 5 9 9 C 1.38715 * 120.02563 * 79.72180 * 4 3 2 10 10 O 1.35893 * 120.05693 * 0.02562 * 9 4 3 11 11 C 1.34777 * 119.99875 * 180.02562 * 2 1 3 12 12 O 1.21593 * 119.99953 * 179.97438 * 11 2 1 13 13 N 1.34773 * 120.00097 * 0.26801 * 11 2 1 14 14 C 1.46500 * 120.00431 * 179.72742 * 13 11 2 15 15 H 1.09008 * 109.46846 * 325.00097 * 14 13 11 16 16 C 1.50698 * 109.47318 * 205.00474 * 14 13 11 17 17 H 1.07999 * 120.00181 * 359.97438 * 16 14 13 18 18 C 1.37879 * 120.00000 * 179.97438 * 16 14 13 19 19 N 1.31518 * 120.00060 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00038 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47364 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47309 * 120.00017 * 20 18 16 23 23 H 1.48504 * 109.46796 * 239.99779 * 20 18 16 24 24 C 1.52996 * 109.47098 * 85.00044 * 14 13 11 25 25 F 1.39894 * 109.47275 * 60.00227 * 24 14 13 26 26 F 1.39904 * 109.47061 * 180.02562 * 24 14 13 27 27 F 1.39905 * 109.47067 * 300.00056 * 24 14 13 28 28 H 1.09001 * 109.47017 * 269.99772 * 1 2 3 29 29 H 1.08997 * 109.47346 * 29.99460 * 1 2 3 30 30 H 1.09004 * 109.47612 * 149.99559 * 1 2 3 31 31 H 1.08994 * 109.46719 * 30.00276 * 3 2 1 32 32 H 1.08996 * 109.47068 * 150.00171 * 3 2 1 33 33 H 1.07999 * 119.97192 * 359.97438 * 5 4 3 34 34 H 1.07994 * 119.94559 * 180.02562 * 6 5 4 35 35 H 1.07993 * 119.97395 * 179.97438 * 7 6 5 36 36 H 1.07997 * 120.02381 * 179.97438 * 8 7 6 37 37 H 0.96701 * 114.00133 * 89.99668 * 10 9 4 38 38 H 0.97000 * 120.00112 * 359.73180 * 13 11 2 39 39 H 0.97000 * 120.00268 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 6 3.6820 1.4840 -2.0035 6 6 3.9128 1.8825 -3.3069 7 6 2.9107 2.5023 -4.0308 8 6 1.6763 2.7253 -3.4524 9 6 1.4399 2.3202 -2.1465 10 8 0.2244 2.5329 -1.5774 11 6 2.1388 -1.1672 -0.0005 12 8 3.3547 -1.1672 -0.0010 13 7 1.4650 -2.3344 -0.0065 14 6 2.1974 -3.6031 -0.0131 15 1 3.1081 -3.4938 -0.6021 16 6 1.3333 -4.6788 -0.6192 17 1 0.3380 -4.4413 -0.9645 18 6 1.8135 -5.9663 -0.7328 19 7 3.0258 -6.2555 -0.3128 20 14 0.7428 -7.2995 -1.4847 21 1 -0.5675 -6.7204 -1.8755 22 1 1.4160 -7.8567 -2.6852 23 1 0.5285 -8.3816 -0.4904 24 6 2.5613 -3.9894 1.4219 25 9 1.3925 -4.1296 2.1777 26 9 3.2612 -5.2007 1.4155 27 9 3.3635 -2.9907 1.9844 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6085 2.0283 0.5139 32 1 3.1499 1.1383 0.5138 33 1 4.4664 1.0006 -1.4401 34 1 4.8774 1.7094 -3.7608 35 1 3.0936 2.8130 -5.0488 36 1 0.8941 3.2097 -4.0180 37 1 0.1461 3.3830 -1.1231 38 1 0.4950 -2.3344 -0.0065 39 1 3.3635 -7.1613 -0.3923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932928307.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:37 Heat of formation + Delta-G solvation = -169.942941 kcal Electronic energy + Delta-G solvation = -29870.787187 eV Core-core repulsion = 25172.011728 eV Total energy + Delta-G solvation = -4698.775458 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.27304 -45.92516 -45.54409 -40.22421 -39.12526 -36.72415 -35.38505 -34.49749 -32.67249 -31.53707 -29.87597 -28.29529 -26.98565 -25.29453 -24.47749 -22.59980 -21.94827 -21.05435 -19.40258 -18.50074 -17.94762 -16.86113 -16.71746 -16.56599 -16.36643 -15.93598 -15.73743 -15.53618 -15.06294 -14.73172 -14.57307 -13.94933 -13.51883 -13.30777 -13.02933 -12.86337 -12.69220 -12.57770 -12.42467 -12.32696 -12.24712 -12.21018 -12.06578 -11.92774 -11.77539 -11.57164 -11.27760 -11.13002 -10.83330 -10.73475 -10.49409 -10.33805 -9.59252 -9.48034 -8.88089 -8.68870 -8.65787 -8.40477 -8.03016 -6.19929 -4.43039 1.17653 1.30894 3.15838 3.20171 3.27754 3.31831 3.68206 3.83885 4.05962 4.21869 4.56321 4.68974 4.81033 4.85421 4.97563 4.99688 5.24843 5.36955 5.45008 5.56823 5.62453 5.77938 5.89035 5.91244 5.95075 5.97863 6.09600 6.28009 6.30863 6.44870 6.54286 6.74461 6.80505 6.96551 7.29193 7.42572 7.52621 7.65504 7.70167 8.54139 8.67599 9.19395 9.31076 10.71873 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.003788 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.382330 B = 7389.287394 C = 7804.261046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.629 5.629 3 C 0.182 3.818 4 C -0.127 4.127 5 C -0.075 4.075 6 C -0.131 4.131 7 C -0.106 4.106 8 C -0.153 4.153 9 C 0.114 3.886 10 O -0.493 6.493 11 C 0.701 3.299 12 O -0.583 6.583 13 N -0.725 5.725 14 C 0.262 3.738 15 H 0.084 0.916 16 C -0.550 4.550 17 H 0.076 0.924 18 C 0.065 3.935 19 N -0.840 5.840 20 Si 0.915 3.085 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.416 3.584 25 F -0.211 7.211 26 F -0.138 7.138 27 F -0.217 7.217 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.134 0.866 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.384 0.616 38 H 0.394 0.606 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.037 17.403 -2.778 18.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.367 5.367 3 C 0.058 3.942 4 C -0.129 4.129 5 C -0.094 4.094 6 C -0.149 4.149 7 C -0.124 4.124 8 C -0.171 4.171 9 C 0.069 3.931 10 O -0.303 6.303 11 C 0.402 3.598 12 O -0.461 6.461 13 N -0.379 5.379 14 C 0.155 3.845 15 H 0.102 0.898 16 C -0.587 4.587 17 H 0.094 0.906 18 C -0.144 4.144 19 N -0.473 5.473 20 Si 0.741 3.259 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.206 1.206 24 C 0.360 3.640 25 F -0.193 7.193 26 F -0.119 7.119 27 F -0.198 7.198 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.151 0.849 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.240 0.760 38 H 0.229 0.771 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.114 16.630 -2.930 17.171 hybrid contribution -0.933 -0.412 0.058 1.021 sum -4.047 16.219 -2.872 16.961 Atomic orbital electron populations 1.21884 0.80005 1.04017 1.01186 1.46927 1.06157 1.04275 1.79344 1.19932 0.98173 0.84507 0.91548 1.20722 0.93399 1.00575 0.98200 1.21180 0.96739 0.96487 0.95003 1.21215 0.99601 0.99396 0.94714 1.21023 0.92926 0.98807 0.99657 1.21337 0.97663 1.02722 0.95382 1.18282 0.84355 0.98774 0.91646 1.84825 1.30233 1.41735 1.73535 1.16021 0.85524 0.80484 0.77744 1.90876 1.11371 1.86086 1.57737 1.45401 1.09850 1.04532 1.78121 1.19585 0.96551 0.80779 0.87542 0.89831 1.20911 1.01674 0.92667 1.43424 0.90573 1.25074 0.95697 0.98867 0.94748 1.70418 1.15543 1.20875 1.40491 0.86167 0.80104 0.80825 0.78773 1.19443 1.20585 1.20579 1.23173 0.73695 0.75565 0.91598 1.92978 1.50651 1.95954 1.79671 1.93398 1.79028 1.43354 1.96133 1.93069 1.75413 1.63188 1.88180 0.93402 0.89093 0.91787 0.90343 0.89061 0.84861 0.85834 0.85935 0.85766 0.76017 0.77060 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 10.21 59.84 0.61 1.55 16 2 N -0.63 -10.20 2.86 -188.75 -0.54 -10.74 16 3 C 0.18 2.47 5.23 -5.19 -0.03 2.44 16 4 C -0.13 -1.68 5.47 -104.47 -0.57 -2.26 16 5 C -0.08 -1.04 9.67 -39.61 -0.38 -1.42 16 6 C -0.13 -1.56 10.04 -39.56 -0.40 -1.96 16 7 C -0.11 -1.13 10.04 -39.60 -0.40 -1.53 16 8 C -0.15 -1.65 9.99 -39.43 -0.39 -2.04 16 9 C 0.11 1.33 6.68 -39.21 -0.26 1.06 16 10 O -0.49 -4.60 10.05 -19.40 -0.19 -4.80 16 11 C 0.70 14.76 7.81 -86.92 -0.68 14.08 16 12 O -0.58 -14.10 14.50 5.28 0.08 -14.02 16 13 N -0.73 -15.78 4.85 -59.81 -0.29 -16.07 16 14 C 0.26 6.73 2.21 -69.09 -0.15 6.58 16 15 H 0.08 2.41 7.58 -51.92 -0.39 2.01 16 16 C -0.55 -14.37 8.46 -34.44 -0.29 -14.67 16 17 H 0.08 1.90 7.74 -52.49 -0.41 1.49 16 18 C 0.06 1.71 5.20 -17.82 -0.09 1.62 16 19 N -0.84 -23.39 9.51 55.43 0.53 -22.86 16 20 Si 0.91 20.44 29.54 -169.99 -5.02 15.42 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 C 0.42 10.98 2.81 37.16 0.10 11.09 16 25 F -0.21 -5.34 16.94 2.25 0.04 -5.31 16 26 F -0.14 -3.90 12.92 2.25 0.03 -3.87 16 27 F -0.22 -5.68 15.68 2.25 0.04 -5.65 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 1.04 5.15 -51.93 -0.27 0.77 16 30 H 0.06 0.86 6.36 -51.93 -0.33 0.53 16 31 H 0.08 0.81 7.79 -51.93 -0.40 0.40 16 32 H 0.09 1.36 7.28 -51.93 -0.38 0.98 16 33 H 0.13 1.96 8.04 -52.49 -0.42 1.54 16 34 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 37 H 0.38 1.73 9.06 45.56 0.41 2.14 16 38 H 0.39 7.62 6.27 -40.82 -0.26 7.36 16 39 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 337.85 15.07 5.09 5.09 Total: -1.00 -32.81 337.85 -6.45 -39.26 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -3.27 Total: 9.01 kcal Atomic # 6 Polarization: 17.48 SS G_CDS: -2.93 Total: 14.55 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: -0.30 Total: -49.67 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.12 Total: -18.82 kcal Atomic # 9 Polarization: -14.93 SS G_CDS: 0.10 Total: -14.83 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.81 -6.45 -39.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932928307.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.685 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds