Wall clock time and date at job start Tue Mar 31 2020 16:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 120.00271 * 2 1 4 4 C 1.50697 * 109.47338 * 270.00352 * 3 2 1 5 5 C 1.38166 * 120.02933 * 259.99751 * 4 3 2 6 6 C 1.38243 * 120.05707 * 179.97438 * 5 4 3 7 7 C 1.38290 * 120.11298 * 0.02562 * 6 5 4 8 8 C 1.38132 * 120.05257 * 0.02562 * 7 6 5 9 9 C 1.38715 * 120.02563 * 79.72180 * 4 3 2 10 10 O 1.35893 * 120.05693 * 0.02562 * 9 4 3 11 11 C 1.34777 * 119.99875 * 180.02562 * 2 1 3 12 12 O 1.21593 * 119.99953 * 179.97438 * 11 2 1 13 13 N 1.34773 * 120.00097 * 0.26801 * 11 2 1 14 14 C 1.46500 * 120.00431 * 179.72742 * 13 11 2 15 15 H 1.09008 * 109.46846 * 325.00097 * 14 13 11 16 16 C 1.50698 * 109.47318 * 205.00474 * 14 13 11 17 17 H 1.07999 * 120.00181 * 359.97438 * 16 14 13 18 18 C 1.37879 * 120.00000 * 179.97438 * 16 14 13 19 19 N 1.31518 * 120.00060 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00038 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47364 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47309 * 120.00017 * 20 18 16 23 23 H 1.48504 * 109.46796 * 239.99779 * 20 18 16 24 24 C 1.52996 * 109.47098 * 85.00044 * 14 13 11 25 25 F 1.39894 * 109.47275 * 60.00227 * 24 14 13 26 26 F 1.39904 * 109.47061 * 180.02562 * 24 14 13 27 27 F 1.39905 * 109.47067 * 300.00056 * 24 14 13 28 28 H 1.09001 * 109.47017 * 269.99772 * 1 2 3 29 29 H 1.08997 * 109.47346 * 29.99460 * 1 2 3 30 30 H 1.09004 * 109.47612 * 149.99559 * 1 2 3 31 31 H 1.08994 * 109.46719 * 30.00276 * 3 2 1 32 32 H 1.08996 * 109.47068 * 150.00171 * 3 2 1 33 33 H 1.07999 * 119.97192 * 359.97438 * 5 4 3 34 34 H 1.07994 * 119.94559 * 180.02562 * 6 5 4 35 35 H 1.07993 * 119.97395 * 179.97438 * 7 6 5 36 36 H 1.07997 * 120.02381 * 179.97438 * 8 7 6 37 37 H 0.96701 * 114.00133 * 89.99668 * 10 9 4 38 38 H 0.97000 * 120.00112 * 359.73180 * 13 11 2 39 39 H 0.97000 * 120.00268 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 6 3.6820 1.4840 -2.0035 6 6 3.9128 1.8825 -3.3069 7 6 2.9107 2.5023 -4.0308 8 6 1.6763 2.7253 -3.4524 9 6 1.4399 2.3202 -2.1465 10 8 0.2244 2.5329 -1.5774 11 6 2.1388 -1.1672 -0.0005 12 8 3.3547 -1.1672 -0.0010 13 7 1.4650 -2.3344 -0.0065 14 6 2.1974 -3.6031 -0.0131 15 1 3.1081 -3.4938 -0.6021 16 6 1.3333 -4.6788 -0.6192 17 1 0.3380 -4.4413 -0.9645 18 6 1.8135 -5.9663 -0.7328 19 7 3.0258 -6.2555 -0.3128 20 14 0.7428 -7.2995 -1.4847 21 1 -0.5675 -6.7204 -1.8755 22 1 1.4160 -7.8567 -2.6852 23 1 0.5285 -8.3816 -0.4904 24 6 2.5613 -3.9894 1.4219 25 9 1.3925 -4.1296 2.1777 26 9 3.2612 -5.2007 1.4155 27 9 3.3635 -2.9907 1.9844 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6085 2.0283 0.5139 32 1 3.1499 1.1383 0.5138 33 1 4.4664 1.0006 -1.4401 34 1 4.8774 1.7094 -3.7608 35 1 3.0936 2.8130 -5.0488 36 1 0.8941 3.2097 -4.0180 37 1 0.1461 3.3830 -1.1231 38 1 0.4950 -2.3344 -0.0065 39 1 3.3635 -7.1613 -0.3923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932928307.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:37 Heat of formation + Delta-G solvation = -192.132491 kcal Electronic energy + Delta-G solvation = -29871.749398 eV Core-core repulsion = 25172.011728 eV Total energy + Delta-G solvation = -4699.737669 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.40630 -48.03880 -47.71944 -41.40610 -40.40788 -37.51433 -36.87979 -36.25877 -34.51324 -32.68752 -30.79762 -30.08549 -28.07474 -26.72556 -26.40327 -23.56874 -23.47076 -22.42620 -21.06911 -19.69309 -19.15228 -18.88118 -18.69716 -18.58829 -17.75907 -17.33565 -16.91384 -16.76798 -16.58230 -16.26482 -15.78822 -15.19319 -15.02943 -14.94113 -14.66783 -14.54694 -14.44942 -14.29205 -14.22968 -14.02273 -13.88717 -13.79947 -13.49343 -13.24425 -13.04449 -12.96989 -12.75967 -12.64929 -12.58701 -12.22222 -12.17921 -11.54936 -11.36224 -11.12711 -10.69889 -10.13438 -9.84118 -9.58919 -9.41754 -8.21463 -6.52307 0.27823 0.39684 1.45440 1.46356 1.59320 1.77582 2.14025 2.36272 2.56691 2.75989 2.94131 3.13001 3.28916 3.78956 3.85373 3.87734 3.91923 4.14622 4.18817 4.29800 4.37393 4.50577 4.61088 4.68138 4.79562 4.86297 4.94061 5.06310 5.16170 5.43389 5.44031 5.47550 5.54792 5.62162 5.65055 5.66512 5.96740 6.04433 6.52737 6.92547 7.06831 7.18153 7.65085 8.71776 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.003788 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.382330 B = 7389.287394 C = 7804.261046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.620 5.620 3 C 0.180 3.820 4 C -0.146 4.146 5 C -0.101 4.101 6 C -0.144 4.144 7 C -0.102 4.102 8 C -0.155 4.155 9 C 0.122 3.878 10 O -0.495 6.495 11 C 0.692 3.308 12 O -0.623 6.623 13 N -0.722 5.722 14 C 0.271 3.729 15 H 0.043 0.957 16 C -0.560 4.560 17 H 0.089 0.911 18 C 0.015 3.985 19 N -0.875 5.875 20 Si 0.985 3.015 21 H -0.256 1.256 22 H -0.277 1.277 23 H -0.279 1.279 24 C 0.414 3.586 25 F -0.203 7.203 26 F -0.151 7.151 27 F -0.218 7.218 28 H 0.066 0.934 29 H 0.113 0.887 30 H 0.058 0.942 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.134 0.866 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.409 0.591 38 H 0.406 0.594 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 18.722 -3.935 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.357 5.357 3 C 0.057 3.943 4 C -0.148 4.148 5 C -0.120 4.120 6 C -0.162 4.162 7 C -0.120 4.120 8 C -0.173 4.173 9 C 0.077 3.923 10 O -0.309 6.309 11 C 0.394 3.606 12 O -0.504 6.504 13 N -0.377 5.377 14 C 0.163 3.837 15 H 0.061 0.939 16 C -0.597 4.597 17 H 0.107 0.893 18 C -0.190 4.190 19 N -0.509 5.509 20 Si 0.808 3.192 21 H -0.180 1.180 22 H -0.203 1.203 23 H -0.205 1.205 24 C 0.357 3.643 25 F -0.185 7.185 26 F -0.132 7.132 27 F -0.200 7.200 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.077 0.923 31 H 0.136 0.864 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.152 0.848 35 H 0.169 0.831 36 H 0.167 0.833 37 H 0.269 0.731 38 H 0.244 0.756 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.979 18.030 -4.074 19.428 hybrid contribution -0.063 -0.693 0.433 0.820 sum -6.042 17.337 -3.641 18.717 Atomic orbital electron populations 1.22117 0.77644 1.04866 1.02675 1.47016 1.07597 1.03402 1.77663 1.20120 0.97679 0.84051 0.92458 1.20692 0.93912 1.02074 0.98095 1.21162 0.96907 0.97839 0.96085 1.21408 1.00841 0.99786 0.94155 1.21376 0.92443 0.97476 1.00711 1.21672 0.98262 1.02231 0.95165 1.18267 0.84321 0.97805 0.91874 1.84734 1.28703 1.43710 1.73713 1.16273 0.85223 0.81475 0.77657 1.90848 1.13336 1.86818 1.59391 1.45170 1.10245 1.03720 1.78578 1.19146 0.95453 0.82608 0.86461 0.93938 1.21218 1.02129 0.92925 1.43426 0.89318 1.26007 0.96868 1.01214 0.94933 1.70545 1.17287 1.21429 1.41610 0.85094 0.78750 0.77618 0.77752 1.17954 1.20252 1.20487 1.23307 0.73708 0.75103 0.92154 1.92975 1.50122 1.95912 1.79511 1.93371 1.79396 1.44200 1.96238 1.93060 1.75562 1.63178 1.88243 0.91546 0.86898 0.92285 0.86419 0.91437 0.87479 0.84783 0.83112 0.83262 0.73147 0.75588 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.62 10.21 127.77 1.30 2.92 16 2 N -0.62 -19.64 2.86 -869.33 -2.48 -22.13 16 3 C 0.18 4.78 5.23 85.63 0.45 5.23 16 4 C -0.15 -3.79 5.47 -19.77 -0.11 -3.90 16 5 C -0.10 -2.91 9.67 22.25 0.22 -2.69 16 6 C -0.14 -3.40 10.04 22.28 0.22 -3.18 16 7 C -0.10 -1.96 10.04 22.26 0.22 -1.73 16 8 C -0.16 -2.89 9.99 22.37 0.22 -2.66 16 9 C 0.12 2.54 6.68 22.51 0.15 2.69 16 10 O -0.49 -7.34 10.05 -92.35 -0.93 -8.27 16 11 C 0.69 29.72 7.81 179.06 1.40 31.12 16 12 O -0.62 -31.65 14.50 -4.01 -0.06 -31.71 16 13 N -0.72 -31.69 4.85 -461.41 -2.24 -33.93 16 14 C 0.27 14.30 2.21 44.24 0.10 14.39 16 15 H 0.04 2.59 7.58 -2.38 -0.02 2.58 16 16 C -0.56 -29.29 8.46 25.60 0.22 -29.08 16 17 H 0.09 4.31 7.74 -2.91 -0.02 4.29 16 18 C 0.01 0.79 5.20 84.65 0.44 1.23 16 19 N -0.87 -49.56 9.51 21.45 0.20 -49.35 16 20 Si 0.98 41.36 29.54 68.60 2.03 43.38 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 22 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 24 C 0.41 22.32 2.81 71.98 0.20 22.52 16 25 F -0.20 -10.31 16.94 44.97 0.76 -9.55 16 26 F -0.15 -8.77 12.92 44.97 0.58 -8.18 16 27 F -0.22 -11.80 15.68 44.97 0.70 -11.10 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.11 2.17 5.15 -2.39 -0.01 2.16 16 30 H 0.06 1.46 6.36 -2.38 -0.02 1.44 16 31 H 0.12 2.13 7.79 -2.39 -0.02 2.11 16 32 H 0.07 2.11 7.28 -2.39 -0.02 2.09 16 33 H 0.11 3.52 8.04 -2.91 -0.02 3.50 16 34 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.41 1.89 9.06 -74.06 -0.67 1.22 16 38 H 0.41 15.43 6.27 -92.71 -0.58 14.85 16 39 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -72.68 337.85 3.49 -69.20 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: -0.12 Total: 24.79 kcal Atomic # 6 Polarization: 31.82 SS G_CDS: 5.04 Total: 36.85 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -4.52 Total: -105.41 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.99 Total: -39.98 kcal Atomic # 9 Polarization: -30.88 SS G_CDS: 2.05 Total: -28.83 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Total: -72.68 3.49 -69.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932928307.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.934 kcal (2) G-P(sol) polarization free energy of solvation -72.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds