Wall clock time and date at job start Tue Mar 31 2020 16:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46504 * 119.99820 * 2 1 4 4 C 1.50694 * 109.47400 * 269.99937 * 3 2 1 5 5 C 1.38163 * 120.02591 * 259.99947 * 4 3 2 6 6 C 1.38248 * 120.05697 * 179.97438 * 5 4 3 7 7 C 1.38283 * 120.10869 * 0.02562 * 6 5 4 8 8 C 1.38121 * 120.05737 * 0.02562 * 7 6 5 9 9 C 1.38710 * 120.02716 * 79.71998 * 4 3 2 10 10 O 1.35893 * 120.06129 * 0.02562 * 9 4 3 11 11 C 1.34779 * 120.00458 * 179.97438 * 2 1 3 12 12 O 1.21586 * 119.99852 * 180.02562 * 11 2 1 13 13 N 1.34779 * 119.99707 * 0.02562 * 11 2 1 14 14 C 1.46497 * 119.99943 * 179.97438 * 13 11 2 15 15 H 1.09007 * 109.47078 * 34.99474 * 14 13 11 16 16 C 1.50694 * 109.47115 * 154.99835 * 14 13 11 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 14 13 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.53000 * 109.47021 * 275.00054 * 14 13 11 25 25 F 1.39897 * 109.46935 * 299.99908 * 24 14 13 26 26 F 1.39899 * 109.47307 * 59.99998 * 24 14 13 27 27 F 1.39901 * 109.47163 * 180.02562 * 24 14 13 28 28 H 1.08999 * 109.47452 * 269.99981 * 1 2 3 29 29 H 1.09001 * 109.47212 * 30.00565 * 1 2 3 30 30 H 1.09003 * 109.46630 * 149.99804 * 1 2 3 31 31 H 1.09003 * 109.47152 * 29.99927 * 3 2 1 32 32 H 1.08996 * 109.47119 * 149.99254 * 3 2 1 33 33 H 1.08007 * 119.97579 * 359.97438 * 5 4 3 34 34 H 1.08000 * 119.94637 * 179.97438 * 6 5 4 35 35 H 1.08007 * 119.97087 * 179.97438 * 7 6 5 36 36 H 1.08004 * 120.03112 * 179.97438 * 8 7 6 37 37 H 0.96700 * 113.99757 * 89.99373 * 10 9 4 38 38 H 0.96997 * 119.99849 * 359.97438 * 13 11 2 39 39 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7039 -1.4207 5 6 3.6821 1.4841 -2.0033 6 6 3.9131 1.8825 -3.3068 7 6 2.9110 2.5022 -4.0307 8 6 1.6766 2.7252 -3.4525 9 6 1.4400 2.3201 -2.1466 10 8 0.2244 2.5327 -1.5776 11 6 2.1390 -1.1672 0.0005 12 8 3.3549 -1.1670 0.0010 13 7 1.4651 -2.3344 0.0005 14 6 2.1977 -3.6031 0.0005 15 1 3.1085 -3.4967 0.5899 16 6 1.3338 -4.6819 0.6010 17 1 0.3387 -4.4462 0.9483 18 6 1.8141 -5.9700 0.7080 19 7 3.0260 -6.2570 0.2855 20 14 0.7434 -7.3071 1.4530 21 1 1.4860 -8.5932 1.4529 22 1 0.3904 -6.9390 2.8476 23 1 -0.4974 -7.4525 0.6501 24 6 2.5616 -3.9818 -1.4365 25 9 1.3927 -4.1183 -2.1930 26 9 3.3636 -2.9803 -1.9939 27 9 3.2606 -5.1937 -1.4366 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0284 0.5138 32 1 3.1498 1.1385 0.5139 33 1 4.4665 1.0006 -1.4399 34 1 4.8780 1.7102 -3.7603 35 1 3.0940 2.8129 -5.0487 36 1 0.8943 3.2096 -4.0181 37 1 0.1460 3.3828 -1.1234 38 1 0.4952 -2.3344 0.0005 39 1 3.3640 -7.1631 0.3611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932928308.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:40 Heat of formation + Delta-G solvation = -169.828860 kcal Electronic energy + Delta-G solvation = -30117.490339 eV Core-core repulsion = 25418.719827 eV Total energy + Delta-G solvation = -4698.770511 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.25883 -45.90970 -45.53349 -40.21070 -39.11953 -36.70689 -35.38169 -34.49688 -32.66868 -31.52471 -29.85386 -28.28935 -26.98121 -25.28913 -24.46735 -22.58098 -21.94123 -21.03706 -19.40154 -18.48690 -17.94285 -16.85169 -16.70193 -16.56968 -16.34741 -15.87006 -15.75775 -15.57753 -15.05935 -14.72066 -14.50769 -13.90675 -13.56504 -13.27194 -13.07088 -12.83259 -12.70819 -12.60445 -12.39559 -12.31062 -12.21520 -12.19660 -12.03354 -11.90596 -11.75966 -11.56284 -11.26768 -11.12241 -10.83693 -10.74159 -10.47144 -10.33955 -9.62069 -9.47981 -8.85661 -8.67983 -8.63886 -8.40065 -8.02621 -6.19289 -4.42885 1.19847 1.33411 3.16079 3.22478 3.27216 3.29712 3.71153 3.83529 4.07273 4.22032 4.56633 4.70129 4.82705 4.87120 4.98002 5.01634 5.26319 5.38821 5.45079 5.57833 5.64175 5.77871 5.88345 5.93205 5.96228 5.99793 6.10402 6.28972 6.32959 6.47143 6.56432 6.74843 6.82671 6.96548 7.29245 7.42312 7.54119 7.65579 7.70393 8.53641 8.67668 9.19416 9.31100 10.72306 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.019869 B = 0.003881 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.921990 B = 7213.257228 C = 7835.490840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.629 5.629 3 C 0.183 3.817 4 C -0.128 4.128 5 C -0.074 4.074 6 C -0.131 4.131 7 C -0.106 4.106 8 C -0.153 4.153 9 C 0.114 3.886 10 O -0.493 6.493 11 C 0.701 3.299 12 O -0.583 6.583 13 N -0.725 5.725 14 C 0.262 3.738 15 H 0.084 0.916 16 C -0.551 4.551 17 H 0.075 0.925 18 C 0.065 3.935 19 N -0.840 5.840 20 Si 0.915 3.085 21 H -0.284 1.284 22 H -0.273 1.273 23 H -0.273 1.273 24 C 0.416 3.584 25 F -0.211 7.211 26 F -0.216 7.216 27 F -0.138 7.138 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.133 0.867 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.384 0.616 38 H 0.394 0.606 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.001 17.387 -3.023 18.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.367 5.367 3 C 0.059 3.941 4 C -0.130 4.130 5 C -0.092 4.092 6 C -0.149 4.149 7 C -0.124 4.124 8 C -0.172 4.172 9 C 0.069 3.931 10 O -0.303 6.303 11 C 0.402 3.598 12 O -0.461 6.461 13 N -0.379 5.379 14 C 0.156 3.844 15 H 0.102 0.898 16 C -0.589 4.589 17 H 0.094 0.906 18 C -0.144 4.144 19 N -0.473 5.473 20 Si 0.741 3.259 21 H -0.209 1.209 22 H -0.198 1.198 23 H -0.199 1.199 24 C 0.359 3.641 25 F -0.193 7.193 26 F -0.198 7.198 27 F -0.119 7.119 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.151 0.849 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.239 0.761 38 H 0.229 0.771 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.070 16.609 -3.268 17.204 hybrid contribution -0.951 -0.415 -0.007 1.038 sum -4.021 16.194 -3.274 17.004 Atomic orbital electron populations 1.21880 0.80003 1.03981 1.01190 1.46933 1.06161 1.04287 1.79341 1.19929 0.98114 0.84485 0.91567 1.20712 0.93404 1.00629 0.98233 1.21177 0.96752 0.96294 0.95022 1.21215 0.99624 0.99338 0.94718 1.21018 0.92935 0.98810 0.99640 1.21331 0.97653 1.02780 0.95391 1.18277 0.84342 0.98820 0.91659 1.84826 1.30237 1.41703 1.73545 1.16022 0.85521 0.80485 0.77743 1.90874 1.11374 1.86090 1.57735 1.45402 1.09845 1.04539 1.78128 1.19578 0.96528 0.80773 0.87520 0.89799 1.20837 1.01684 0.92559 1.43770 0.90647 1.25074 0.95698 0.98859 0.94727 1.70402 1.15554 1.21075 1.40280 0.86278 0.80012 0.79984 0.79581 1.20888 1.19811 1.19867 1.23175 0.73695 0.75493 0.91693 1.92979 1.50675 1.95981 1.79660 1.93071 1.75405 1.62970 1.88357 1.93396 1.79089 1.43283 1.96167 0.93297 0.89118 0.91907 0.90330 0.89084 0.84873 0.85842 0.85943 0.85773 0.76056 0.77066 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 10.20 59.85 0.61 1.56 16 2 N -0.63 -10.20 2.86 -188.74 -0.54 -10.74 16 3 C 0.18 2.48 5.23 -5.19 -0.03 2.45 16 4 C -0.13 -1.74 5.47 -104.48 -0.57 -2.31 16 5 C -0.07 -1.06 9.66 -39.61 -0.38 -1.44 16 6 C -0.13 -1.64 10.04 -39.56 -0.40 -2.04 16 7 C -0.11 -1.19 10.04 -39.61 -0.40 -1.58 16 8 C -0.15 -1.72 9.99 -39.43 -0.39 -2.12 16 9 C 0.11 1.36 6.68 -39.21 -0.26 1.10 16 10 O -0.49 -4.71 10.05 -19.40 -0.19 -4.90 16 11 C 0.70 14.76 7.81 -86.91 -0.68 14.08 16 12 O -0.58 -14.09 14.49 5.29 0.08 -14.02 16 13 N -0.73 -15.79 4.85 -59.81 -0.29 -16.08 16 14 C 0.26 6.75 2.21 -69.09 -0.15 6.59 16 15 H 0.08 2.41 7.58 -51.92 -0.39 2.01 16 16 C -0.55 -14.38 8.46 -34.44 -0.29 -14.67 16 17 H 0.08 1.86 7.74 -52.49 -0.41 1.45 16 18 C 0.07 1.72 5.20 -17.82 -0.09 1.63 16 19 N -0.84 -23.38 9.50 55.43 0.53 -22.85 16 20 Si 0.91 20.34 29.54 -169.99 -5.02 15.32 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 C 0.42 11.08 2.81 37.16 0.10 11.19 16 25 F -0.21 -5.46 16.94 2.25 0.04 -5.42 16 26 F -0.22 -5.76 15.68 2.25 0.04 -5.72 16 27 F -0.14 -3.93 12.91 2.25 0.03 -3.90 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.09 1.05 5.15 -51.93 -0.27 0.78 16 30 H 0.06 0.86 6.36 -51.93 -0.33 0.53 16 31 H 0.08 0.80 7.79 -51.93 -0.40 0.39 16 32 H 0.09 1.34 7.28 -51.93 -0.38 0.96 16 33 H 0.13 2.04 8.04 -52.48 -0.42 1.62 16 34 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.38 1.78 9.06 45.56 0.41 2.19 16 38 H 0.39 7.62 6.27 -40.82 -0.26 7.37 16 39 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 337.86 15.07 5.09 5.09 Total: -1.00 -32.92 337.86 -6.45 -39.37 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -3.27 Total: 9.41 kcal Atomic # 6 Polarization: 17.37 SS G_CDS: -2.93 Total: 14.44 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: -0.30 Total: -49.67 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.12 Total: -18.92 kcal Atomic # 9 Polarization: -15.15 SS G_CDS: 0.10 Total: -15.05 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.92 -6.45 -39.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932928308.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.457 kcal (2) G-P(sol) polarization free energy of solvation -32.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds