Wall clock time and date at job start Tue Mar 31 2020 16:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46504 * 119.99820 * 2 1 4 4 C 1.50694 * 109.47400 * 269.99937 * 3 2 1 5 5 C 1.38163 * 120.02591 * 259.99947 * 4 3 2 6 6 C 1.38248 * 120.05697 * 179.97438 * 5 4 3 7 7 C 1.38283 * 120.10869 * 0.02562 * 6 5 4 8 8 C 1.38121 * 120.05737 * 0.02562 * 7 6 5 9 9 C 1.38710 * 120.02716 * 79.71998 * 4 3 2 10 10 O 1.35893 * 120.06129 * 0.02562 * 9 4 3 11 11 C 1.34779 * 120.00458 * 179.97438 * 2 1 3 12 12 O 1.21586 * 119.99852 * 180.02562 * 11 2 1 13 13 N 1.34779 * 119.99707 * 0.02562 * 11 2 1 14 14 C 1.46497 * 119.99943 * 179.97438 * 13 11 2 15 15 H 1.09007 * 109.47078 * 34.99474 * 14 13 11 16 16 C 1.50694 * 109.47115 * 154.99835 * 14 13 11 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 14 13 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.53000 * 109.47021 * 275.00054 * 14 13 11 25 25 F 1.39897 * 109.46935 * 299.99908 * 24 14 13 26 26 F 1.39899 * 109.47307 * 59.99998 * 24 14 13 27 27 F 1.39901 * 109.47163 * 180.02562 * 24 14 13 28 28 H 1.08999 * 109.47452 * 269.99981 * 1 2 3 29 29 H 1.09001 * 109.47212 * 30.00565 * 1 2 3 30 30 H 1.09003 * 109.46630 * 149.99804 * 1 2 3 31 31 H 1.09003 * 109.47152 * 29.99927 * 3 2 1 32 32 H 1.08996 * 109.47119 * 149.99254 * 3 2 1 33 33 H 1.08007 * 119.97579 * 359.97438 * 5 4 3 34 34 H 1.08000 * 119.94637 * 179.97438 * 6 5 4 35 35 H 1.08007 * 119.97087 * 179.97438 * 7 6 5 36 36 H 1.08004 * 120.03112 * 179.97438 * 8 7 6 37 37 H 0.96700 * 113.99757 * 89.99373 * 10 9 4 38 38 H 0.96997 * 119.99849 * 359.97438 * 13 11 2 39 39 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7039 -1.4207 5 6 3.6821 1.4841 -2.0033 6 6 3.9131 1.8825 -3.3068 7 6 2.9110 2.5022 -4.0307 8 6 1.6766 2.7252 -3.4525 9 6 1.4400 2.3201 -2.1466 10 8 0.2244 2.5327 -1.5776 11 6 2.1390 -1.1672 0.0005 12 8 3.3549 -1.1670 0.0010 13 7 1.4651 -2.3344 0.0005 14 6 2.1977 -3.6031 0.0005 15 1 3.1085 -3.4967 0.5899 16 6 1.3338 -4.6819 0.6010 17 1 0.3387 -4.4462 0.9483 18 6 1.8141 -5.9700 0.7080 19 7 3.0260 -6.2570 0.2855 20 14 0.7434 -7.3071 1.4530 21 1 1.4860 -8.5932 1.4529 22 1 0.3904 -6.9390 2.8476 23 1 -0.4974 -7.4525 0.6501 24 6 2.5616 -3.9818 -1.4365 25 9 1.3927 -4.1183 -2.1930 26 9 3.3636 -2.9803 -1.9939 27 9 3.2606 -5.1937 -1.4366 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0284 0.5138 32 1 3.1498 1.1385 0.5139 33 1 4.4665 1.0006 -1.4399 34 1 4.8780 1.7102 -3.7603 35 1 3.0940 2.8129 -5.0487 36 1 0.8943 3.2096 -4.0181 37 1 0.1460 3.3828 -1.1234 38 1 0.4952 -2.3344 0.0005 39 1 3.3640 -7.1631 0.3611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932928308.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:39 Heat of formation + Delta-G solvation = -192.151271 kcal Electronic energy + Delta-G solvation = -30118.458311 eV Core-core repulsion = 25418.719827 eV Total energy + Delta-G solvation = -4699.738484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.41503 -48.05197 -47.72595 -41.40706 -40.41425 -37.52415 -36.87710 -36.25664 -34.50823 -32.69359 -30.80696 -30.08417 -28.07430 -26.72040 -26.40191 -23.57688 -23.48330 -22.42827 -21.06875 -19.69029 -19.16683 -18.88959 -18.70574 -18.57542 -17.76446 -17.24315 -17.11694 -16.68902 -16.59753 -16.22115 -15.75564 -15.22370 -15.04674 -14.93823 -14.69361 -14.58545 -14.46318 -14.29646 -14.22215 -14.02631 -13.90324 -13.75949 -13.49712 -13.20492 -13.02844 -13.01620 -12.74991 -12.62904 -12.60076 -12.23091 -12.18050 -11.58716 -11.36572 -11.12930 -10.67149 -10.13923 -9.84700 -9.59286 -9.42155 -8.20374 -6.51674 0.26757 0.38534 1.46599 1.49775 1.57802 1.77137 2.15423 2.37503 2.55696 2.75061 2.94935 3.13276 3.27661 3.78557 3.84221 3.89015 3.91149 4.13601 4.18490 4.28791 4.36919 4.49513 4.60992 4.67624 4.80752 4.86057 4.93770 5.05162 5.15702 5.42462 5.43680 5.47498 5.53641 5.61137 5.65325 5.67009 5.95693 6.04715 6.52992 6.92090 7.07080 7.18779 7.65310 8.72377 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.019869 B = 0.003881 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.921990 B = 7213.257228 C = 7835.490840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.621 5.621 3 C 0.180 3.820 4 C -0.147 4.147 5 C -0.101 4.101 6 C -0.146 4.146 7 C -0.103 4.103 8 C -0.156 4.156 9 C 0.122 3.878 10 O -0.494 6.494 11 C 0.692 3.308 12 O -0.623 6.623 13 N -0.722 5.722 14 C 0.272 3.728 15 H 0.045 0.955 16 C -0.562 4.562 17 H 0.090 0.910 18 C 0.015 3.985 19 N -0.875 5.875 20 Si 0.985 3.015 21 H -0.284 1.284 22 H -0.261 1.261 23 H -0.266 1.266 24 C 0.413 3.587 25 F -0.206 7.206 26 F -0.219 7.219 27 F -0.150 7.150 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.055 0.945 31 H 0.120 0.880 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.133 0.867 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.409 0.591 38 H 0.406 0.594 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.884 18.700 -3.206 20.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.357 5.357 3 C 0.058 3.942 4 C -0.149 4.149 5 C -0.120 4.120 6 C -0.164 4.164 7 C -0.121 4.121 8 C -0.174 4.174 9 C 0.077 3.923 10 O -0.308 6.308 11 C 0.394 3.606 12 O -0.504 6.504 13 N -0.377 5.377 14 C 0.164 3.836 15 H 0.063 0.937 16 C -0.599 4.599 17 H 0.108 0.892 18 C -0.190 4.190 19 N -0.509 5.509 20 Si 0.808 3.192 21 H -0.209 1.209 22 H -0.186 1.186 23 H -0.191 1.191 24 C 0.356 3.644 25 F -0.188 7.188 26 F -0.201 7.201 27 F -0.132 7.132 28 H 0.090 0.910 29 H 0.130 0.870 30 H 0.073 0.927 31 H 0.138 0.862 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.151 0.849 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.269 0.731 38 H 0.244 0.756 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.010 18.003 -3.439 19.289 hybrid contribution -0.063 -0.694 0.011 0.697 sum -6.073 17.309 -3.429 18.662 Atomic orbital electron populations 1.22116 0.77632 1.04631 1.02882 1.47021 1.07604 1.03406 1.77655 1.20132 0.97788 0.84063 0.92266 1.20719 0.93815 1.02014 0.98314 1.21165 0.97010 0.97701 0.96076 1.21409 1.00847 0.99861 0.94246 1.21368 0.92489 0.97531 1.00692 1.21677 0.98222 1.02291 0.95236 1.18265 0.84354 0.97796 0.91861 1.84736 1.28614 1.43717 1.73714 1.16276 0.85221 0.81479 0.77654 1.90846 1.13340 1.86821 1.59381 1.45172 1.10242 1.03729 1.78578 1.19155 0.95537 0.82645 0.86285 0.93714 1.21173 1.02232 0.92784 1.43689 0.89165 1.26020 0.96865 1.01254 0.94885 1.70536 1.17340 1.21540 1.41460 0.85188 0.78151 0.76688 0.79151 1.20910 1.18586 1.19063 1.23385 0.73639 0.75021 0.92333 1.92973 1.50260 1.95949 1.79575 1.93061 1.75593 1.63032 1.88461 1.93371 1.79439 1.44089 1.96270 0.91042 0.87043 0.92664 0.86213 0.91236 0.87515 0.84919 0.83148 0.83220 0.73110 0.75593 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.62 10.20 127.77 1.30 2.92 16 2 N -0.62 -19.57 2.86 -869.30 -2.48 -22.05 16 3 C 0.18 4.76 5.23 85.63 0.45 5.21 16 4 C -0.15 -3.92 5.47 -19.77 -0.11 -4.02 16 5 C -0.10 -3.01 9.66 22.25 0.22 -2.79 16 6 C -0.15 -3.65 10.04 22.28 0.22 -3.42 16 7 C -0.10 -2.09 10.04 22.25 0.22 -1.87 16 8 C -0.16 -3.05 9.99 22.37 0.22 -2.83 16 9 C 0.12 2.62 6.68 22.51 0.15 2.77 16 10 O -0.49 -7.51 10.05 -92.35 -0.93 -8.43 16 11 C 0.69 29.67 7.81 179.05 1.40 31.06 16 12 O -0.62 -31.61 14.49 -3.99 -0.06 -31.67 16 13 N -0.72 -31.67 4.85 -461.41 -2.24 -33.91 16 14 C 0.27 14.32 2.21 44.24 0.10 14.42 16 15 H 0.05 2.71 7.58 -2.38 -0.02 2.69 16 16 C -0.56 -29.26 8.46 25.60 0.22 -29.04 16 17 H 0.09 4.32 7.74 -2.91 -0.02 4.30 16 18 C 0.02 0.79 5.20 84.66 0.44 1.23 16 19 N -0.87 -49.54 9.50 21.45 0.20 -49.34 16 20 Si 0.99 41.11 29.54 68.60 2.03 43.13 16 21 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 23 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 24 C 0.41 22.50 2.81 71.98 0.20 22.71 16 25 F -0.21 -10.66 16.94 44.97 0.76 -9.90 16 26 F -0.22 -12.09 15.68 44.97 0.70 -11.39 16 27 F -0.15 -8.79 12.91 44.97 0.58 -8.21 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.11 2.16 5.15 -2.39 -0.01 2.15 16 30 H 0.05 1.39 6.36 -2.39 -0.02 1.37 16 31 H 0.12 2.11 7.79 -2.39 -0.02 2.09 16 32 H 0.07 2.13 7.28 -2.39 -0.02 2.11 16 33 H 0.11 3.63 8.04 -2.91 -0.02 3.61 16 34 H 0.13 2.90 8.06 -2.91 -0.02 2.87 16 35 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 36 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.41 1.95 9.06 -74.06 -0.67 1.27 16 38 H 0.41 15.41 6.27 -92.71 -0.58 14.83 16 39 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -73.04 337.86 3.49 -69.56 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -0.12 Total: 25.86 kcal Atomic # 6 Polarization: 31.31 SS G_CDS: 5.03 Total: 36.34 kcal Atomic # 7 Polarization: -100.78 SS G_CDS: -4.52 Total: -105.29 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.99 Total: -40.10 kcal Atomic # 9 Polarization: -31.55 SS G_CDS: 2.05 Total: -29.50 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.13 kcal Total: -73.04 3.49 -69.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932928308.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.593 kcal (2) G-P(sol) polarization free energy of solvation -73.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds