Wall clock time and date at job start Tue Mar 31 2020 16:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46865 * 2 1 4 4 C 1.34775 * 120.00019 * 274.89046 * 3 2 1 5 5 O 1.21510 * 119.99886 * 184.64196 * 4 3 2 6 6 C 1.48209 * 120.00019 * 4.63869 * 4 3 2 7 7 N 1.32976 * 120.61337 * 5.35613 * 6 4 3 8 8 C 1.31766 * 120.90174 * 179.71094 * 7 6 4 9 9 N 1.31191 * 122.65349 * 0.58134 * 8 7 6 10 10 C 1.34518 * 121.10438 * 359.70823 * 9 8 7 11 11 C 1.44797 * 130.27907 * 179.97438 * 10 9 8 12 12 C 1.32204 * 114.91376 * 180.02562 * 11 10 9 13 13 S 1.75369 * 111.45150 * 359.97438 * 12 11 10 14 14 C 1.40450 * 120.61365 * 185.62370 * 6 4 3 15 15 C 1.46503 * 119.99763 * 94.88840 * 3 2 1 16 16 C 1.53500 * 114.20563 * 232.60165 * 15 3 2 17 17 N 1.47064 * 87.98267 * 220.15043 * 16 15 3 18 18 C 1.36938 * 136.05617 * 207.08588 * 17 16 15 19 19 H 1.08004 * 120.00062 * 5.09264 * 18 17 16 20 20 C 1.38812 * 120.00201 * 185.08977 * 18 17 16 21 21 N 1.31620 * 119.99782 * 5.08419 * 20 18 17 22 22 Si 1.86800 * 119.99954 * 185.07842 * 20 18 17 23 23 H 1.48506 * 109.46993 * 265.00366 * 22 20 18 24 24 H 1.48494 * 109.47344 * 25.00308 * 22 20 18 25 25 H 1.48494 * 109.46950 * 145.00378 * 22 20 18 26 26 C 1.47059 * 87.88842 * 27.34181 * 17 16 15 27 27 H 1.08994 * 109.47458 * 299.99637 * 1 2 3 28 28 H 1.09005 * 109.47078 * 60.00502 * 1 2 3 29 29 H 1.08997 * 109.46822 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47458 * 240.00363 * 2 1 3 31 31 H 1.09001 * 109.46759 * 119.99872 * 2 1 3 32 32 H 1.08004 * 118.67464 * 180.26863 * 8 7 6 33 33 H 1.07996 * 122.53999 * 0.03786 * 11 10 9 34 34 H 1.07996 * 124.27359 * 179.97438 * 12 11 10 35 35 H 1.08997 * 113.28297 * 5.66776 * 15 3 2 36 36 H 1.09000 * 113.47027 * 105.36766 * 16 15 3 37 37 H 1.09001 * 113.46414 * 334.92570 * 16 15 3 38 38 H 0.96999 * 119.99759 * 180.02562 * 21 20 18 39 39 H 1.08999 * 113.46954 * 87.43673 * 26 17 16 40 40 H 1.09007 * 113.46732 * 217.88126 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1491 2.0498 -1.1629 5 8 2.6329 3.1644 -1.1719 6 6 1.7028 1.4254 -2.4309 7 7 1.0760 0.2527 -2.4243 8 6 0.6717 -0.3048 -3.5477 9 7 0.8684 0.2459 -4.7220 10 6 1.4978 1.4291 -4.8381 11 6 1.8178 2.2076 -6.0163 12 6 2.4522 3.3428 -5.7783 13 16 2.7252 3.5773 -4.0619 14 6 1.9391 2.0588 -3.6620 15 6 2.3644 2.0358 1.2642 16 6 1.6795 3.3928 1.4784 17 7 2.9466 3.8852 2.0395 18 6 3.3183 4.8479 2.9396 19 1 2.5648 5.4022 3.4794 20 6 4.6636 5.1113 3.1583 21 7 5.5791 4.5081 2.4300 22 14 5.1744 6.3218 4.4861 23 1 5.3742 7.6637 3.8821 24 1 4.1127 6.3981 5.5214 25 1 6.4425 5.8660 5.1100 26 6 3.6393 2.8931 1.2036 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.1623 -1.2560 -3.5002 33 1 1.5579 1.8854 -7.0137 34 1 2.7629 4.0380 -6.5441 35 1 2.3115 1.3678 2.1238 36 1 0.8672 3.3592 2.2045 37 1 1.3951 3.8869 0.5494 38 1 6.5191 4.6919 2.5831 39 1 3.8714 3.2555 0.2021 40 1 4.4968 2.4338 1.6956 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950480232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:19 Heat of formation + Delta-G solvation = 139.516866 kcal Electronic energy + Delta-G solvation = -26342.626494 eV Core-core repulsion = 22674.172582 eV Total energy + Delta-G solvation = -3668.453912 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.46899 -39.92739 -37.13226 -36.51040 -35.37168 -33.36042 -32.01245 -30.88117 -29.99523 -27.58576 -25.65351 -25.19398 -24.47257 -23.33187 -23.19249 -21.88266 -20.42238 -19.15639 -18.56105 -17.34205 -16.96085 -16.56773 -15.87713 -15.78405 -15.56376 -14.91205 -14.70789 -14.50101 -14.40840 -13.95433 -13.73487 -13.50378 -13.03360 -12.85966 -12.63949 -12.38300 -12.24415 -11.67136 -11.53432 -11.41566 -11.32531 -11.11058 -10.88659 -10.77713 -10.71545 -10.56545 -10.08584 -10.01234 -9.83413 -9.53069 -9.33364 -9.17888 -8.59312 -8.24875 -8.04377 -6.74959 -5.70398 -3.00501 0.01052 0.38921 1.20124 1.76030 1.77491 2.87688 2.97071 3.43438 3.47915 3.50335 3.55041 3.61802 3.77034 4.13644 4.46377 4.54103 4.76561 4.89013 5.20366 5.23012 5.35836 5.44234 5.55053 5.58213 5.62422 5.65428 5.73183 5.84254 5.91067 5.98495 6.12729 6.35418 6.44570 6.48869 6.55371 6.64693 6.93262 7.28287 7.55575 7.59971 7.71170 7.77009 8.03422 8.31611 9.10634 9.76882 10.72832 11.48117 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.016365 B = 0.003728 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.557476 B = 7508.643790 C = 8884.872834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.107 3.893 3 N -0.570 5.570 4 C 0.552 3.448 5 O -0.491 6.491 6 C 0.195 3.805 7 N -0.474 5.474 8 C 0.284 3.716 9 N -0.482 5.482 10 C 0.165 3.835 11 C -0.126 4.126 12 C -0.186 4.186 13 S 0.231 5.769 14 C -0.231 4.231 15 C 0.079 3.921 16 C 0.112 3.888 17 N -0.601 5.601 18 C -0.215 4.215 19 H 0.081 0.919 20 C -0.007 4.007 21 N -0.916 5.916 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.280 1.280 25 H -0.290 1.290 26 C 0.146 3.854 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.205 0.795 33 H 0.156 0.844 34 H 0.180 0.820 35 H 0.112 0.888 36 H 0.035 0.965 37 H 0.043 0.957 38 H 0.253 0.747 39 H 0.071 0.929 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.700 -10.963 -15.986 21.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.016 4.016 3 N -0.301 5.301 4 C 0.336 3.664 5 O -0.364 6.364 6 C 0.036 3.964 7 N -0.192 5.192 8 C -0.007 4.007 9 N -0.196 5.196 10 C 0.019 3.981 11 C -0.157 4.157 12 C -0.324 4.324 13 S 0.495 5.505 14 C -0.353 4.353 15 C -0.025 4.025 16 C -0.016 4.016 17 N -0.326 5.326 18 C -0.342 4.342 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.563 5.563 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.206 1.206 25 H -0.217 1.217 26 C 0.020 3.980 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.221 0.779 33 H 0.173 0.827 34 H 0.197 0.803 35 H 0.130 0.870 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.961 -9.866 -14.944 20.024 hybrid contribution -0.094 0.146 -0.306 0.352 sum -9.055 -9.720 -15.249 20.224 Atomic orbital electron populations 1.22065 0.95828 1.01532 1.01658 1.21883 0.94902 0.81781 1.03041 1.47875 1.62289 1.14089 1.05850 1.17745 0.80491 0.85703 0.82452 1.90856 1.42325 1.18353 1.84907 1.21409 0.92432 0.90066 0.92483 1.69128 1.10587 1.08632 1.30843 1.24894 0.94369 0.99412 0.82068 1.68177 1.13287 1.09024 1.29101 1.20386 0.94710 0.91462 0.91539 1.20452 1.03112 0.94309 0.97851 1.25984 1.02266 1.00934 1.03214 1.85412 1.55813 1.14291 0.94997 1.24375 1.08374 1.04065 0.98458 1.24053 1.01744 0.93314 0.83352 1.22700 0.91311 0.91090 0.96457 1.45318 1.01576 1.40390 1.45364 1.18907 0.91315 1.11647 1.12375 0.90130 1.24814 0.95624 1.00174 0.99765 1.69872 0.99811 1.45725 1.40877 0.86105 0.77912 0.80619 0.81156 1.21651 1.20553 1.21651 1.22725 0.92102 0.86763 0.96443 0.93264 0.92151 0.92155 0.88529 0.91090 0.77902 0.82652 0.80267 0.86984 0.94632 0.93956 0.93725 0.91177 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.52 37.16 0.35 -1.31 16 2 C 0.11 1.32 5.72 -4.04 -0.02 1.30 16 3 N -0.57 -9.37 2.77 -166.70 -0.46 -9.83 16 4 C 0.55 9.75 7.10 -12.16 -0.09 9.66 16 5 O -0.49 -10.32 10.80 5.36 0.06 -10.26 16 6 C 0.20 2.91 6.54 -82.44 -0.54 2.37 16 7 N -0.47 -5.78 4.20 -11.12 -0.05 -5.82 16 8 C 0.28 2.96 12.22 -92.69 -1.13 1.83 16 9 N -0.48 -5.79 10.49 -11.75 -0.12 -5.91 16 10 C 0.17 2.08 7.23 -83.24 -0.60 1.48 16 11 C -0.13 -1.24 10.39 -38.92 -0.40 -1.64 16 12 C -0.19 -1.69 11.03 28.81 0.32 -1.37 16 13 S 0.23 3.03 21.61 -107.50 -2.32 0.70 16 14 C -0.23 -3.29 6.35 -37.89 -0.24 -3.53 16 15 C 0.08 1.54 4.80 -67.67 -0.32 1.21 16 16 C 0.11 2.49 8.10 -8.51 -0.07 2.42 16 17 N -0.60 -16.28 3.77 -184.62 -0.70 -16.98 16 18 C -0.21 -6.27 10.74 -15.06 -0.16 -6.43 16 19 H 0.08 2.26 7.83 -52.48 -0.41 1.85 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 21 N -0.92 -28.20 11.72 55.49 0.65 -27.55 16 22 Si 0.91 22.65 29.56 -169.99 -5.02 17.63 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 C 0.15 3.65 6.61 -8.38 -0.06 3.59 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.72 6.28 -51.93 -0.33 0.40 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 1.14 5.65 -51.93 -0.29 0.85 16 31 H 0.07 0.79 7.90 -51.93 -0.41 0.38 16 32 H 0.20 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.18 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.11 2.01 7.93 -51.93 -0.41 1.60 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.04 1.00 6.48 -51.93 -0.34 0.66 16 38 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.07 1.90 5.21 -51.93 -0.27 1.63 16 40 H 0.06 1.52 7.47 -51.93 -0.39 1.14 16 LS Contribution 339.75 15.07 5.12 5.12 Total: -1.00 -34.74 339.75 -10.43 -45.17 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -4.52 Total: -1.56 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -3.06 Total: 9.29 kcal Atomic # 7 Polarization: -65.42 SS G_CDS: -0.68 Total: -66.10 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.06 Total: -10.26 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -2.32 Total: 0.70 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.74 -10.43 -45.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950480232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.686 kcal (2) G-P(sol) polarization free energy of solvation -34.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds