Wall clock time and date at job start Tue Mar 31 2020 16:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46865 * 2 1 4 4 C 1.34775 * 120.00019 * 274.89046 * 3 2 1 5 5 O 1.21510 * 119.99886 * 184.64196 * 4 3 2 6 6 C 1.48209 * 120.00019 * 4.63869 * 4 3 2 7 7 N 1.32976 * 120.61337 * 5.35613 * 6 4 3 8 8 C 1.31766 * 120.90174 * 179.71094 * 7 6 4 9 9 N 1.31191 * 122.65349 * 0.58134 * 8 7 6 10 10 C 1.34518 * 121.10438 * 359.70823 * 9 8 7 11 11 C 1.44797 * 130.27907 * 179.97438 * 10 9 8 12 12 C 1.32204 * 114.91376 * 180.02562 * 11 10 9 13 13 S 1.75369 * 111.45150 * 359.97438 * 12 11 10 14 14 C 1.40450 * 120.61365 * 185.62370 * 6 4 3 15 15 C 1.46503 * 119.99763 * 94.88840 * 3 2 1 16 16 C 1.53500 * 114.20563 * 232.60165 * 15 3 2 17 17 N 1.47064 * 87.98267 * 220.15043 * 16 15 3 18 18 C 1.36938 * 136.05617 * 207.08588 * 17 16 15 19 19 H 1.08004 * 120.00062 * 5.09264 * 18 17 16 20 20 C 1.38812 * 120.00201 * 185.08977 * 18 17 16 21 21 N 1.31620 * 119.99782 * 5.08419 * 20 18 17 22 22 Si 1.86800 * 119.99954 * 185.07842 * 20 18 17 23 23 H 1.48506 * 109.46993 * 265.00366 * 22 20 18 24 24 H 1.48494 * 109.47344 * 25.00308 * 22 20 18 25 25 H 1.48494 * 109.46950 * 145.00378 * 22 20 18 26 26 C 1.47059 * 87.88842 * 27.34181 * 17 16 15 27 27 H 1.08994 * 109.47458 * 299.99637 * 1 2 3 28 28 H 1.09005 * 109.47078 * 60.00502 * 1 2 3 29 29 H 1.08997 * 109.46822 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47458 * 240.00363 * 2 1 3 31 31 H 1.09001 * 109.46759 * 119.99872 * 2 1 3 32 32 H 1.08004 * 118.67464 * 180.26863 * 8 7 6 33 33 H 1.07996 * 122.53999 * 0.03786 * 11 10 9 34 34 H 1.07996 * 124.27359 * 179.97438 * 12 11 10 35 35 H 1.08997 * 113.28297 * 5.66776 * 15 3 2 36 36 H 1.09000 * 113.47027 * 105.36766 * 16 15 3 37 37 H 1.09001 * 113.46414 * 334.92570 * 16 15 3 38 38 H 0.96999 * 119.99759 * 180.02562 * 21 20 18 39 39 H 1.08999 * 113.46954 * 87.43673 * 26 17 16 40 40 H 1.09007 * 113.46732 * 217.88126 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1491 2.0498 -1.1629 5 8 2.6329 3.1644 -1.1719 6 6 1.7028 1.4254 -2.4309 7 7 1.0760 0.2527 -2.4243 8 6 0.6717 -0.3048 -3.5477 9 7 0.8684 0.2459 -4.7220 10 6 1.4978 1.4291 -4.8381 11 6 1.8178 2.2076 -6.0163 12 6 2.4522 3.3428 -5.7783 13 16 2.7252 3.5773 -4.0619 14 6 1.9391 2.0588 -3.6620 15 6 2.3644 2.0358 1.2642 16 6 1.6795 3.3928 1.4784 17 7 2.9466 3.8852 2.0395 18 6 3.3183 4.8479 2.9396 19 1 2.5648 5.4022 3.4794 20 6 4.6636 5.1113 3.1583 21 7 5.5791 4.5081 2.4300 22 14 5.1744 6.3218 4.4861 23 1 5.3742 7.6637 3.8821 24 1 4.1127 6.3981 5.5214 25 1 6.4425 5.8660 5.1100 26 6 3.6393 2.8931 1.2036 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.1623 -1.2560 -3.5002 33 1 1.5579 1.8854 -7.0137 34 1 2.7629 4.0380 -6.5441 35 1 2.3115 1.3678 2.1238 36 1 0.8672 3.3592 2.2045 37 1 1.3951 3.8869 0.5494 38 1 6.5191 4.6919 2.5831 39 1 3.8714 3.2555 0.2021 40 1 4.4968 2.4338 1.6956 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950480232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:18 Heat of formation + Delta-G solvation = 117.891589 kcal Electronic energy + Delta-G solvation = -26343.564237 eV Core-core repulsion = 22674.172582 eV Total energy + Delta-G solvation = -3669.391654 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.52791 -41.31688 -38.82160 -37.48789 -36.58852 -34.55970 -33.95700 -31.82524 -31.20455 -29.46012 -26.99529 -26.40068 -26.09035 -24.96238 -24.28191 -22.81861 -22.01934 -20.52514 -19.52390 -18.77904 -18.43044 -17.94198 -17.26572 -16.94061 -16.74818 -16.63229 -15.94509 -15.86974 -15.67239 -15.32061 -14.98751 -14.51557 -14.43156 -14.17530 -13.87847 -13.71306 -13.48285 -13.40847 -13.02031 -12.87158 -12.69989 -12.55021 -12.35707 -12.14863 -12.02807 -11.93322 -11.77662 -11.49681 -11.31599 -11.27195 -10.72809 -10.41161 -10.24445 -9.59874 -9.15893 -8.89899 -7.92734 -5.25915 -0.98272 -0.56907 0.25568 0.90680 0.92724 1.43656 1.46865 1.56429 1.66371 1.68904 2.46880 2.60581 2.64689 2.83451 3.13751 3.29281 3.46000 3.55652 3.75505 3.87283 4.08191 4.21149 4.25377 4.53554 4.57057 4.61628 4.73378 4.77288 4.78600 4.87395 4.95111 5.02628 5.10522 5.19436 5.23530 5.33656 5.44799 5.52470 5.61483 5.86149 5.89737 6.31782 6.76050 6.87948 6.97669 7.57105 8.59501 9.26331 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.016365 B = 0.003728 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.557476 B = 7508.643790 C = 8884.872834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.103 3.897 3 N -0.569 5.569 4 C 0.546 3.454 5 O -0.533 6.533 6 C 0.178 3.822 7 N -0.465 5.465 8 C 0.288 3.712 9 N -0.485 5.485 10 C 0.162 3.838 11 C -0.129 4.129 12 C -0.154 4.154 13 S 0.156 5.844 14 C -0.248 4.248 15 C 0.117 3.883 16 C 0.115 3.885 17 N -0.630 5.630 18 C -0.233 4.233 19 H 0.087 0.913 20 C -0.067 4.067 21 N -0.954 5.954 22 Si 0.985 3.015 23 H -0.289 1.289 24 H -0.262 1.262 25 H -0.291 1.291 26 C 0.144 3.856 27 H 0.040 0.960 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.250 0.750 33 H 0.190 0.810 34 H 0.220 0.780 35 H 0.137 0.863 36 H 0.056 0.944 37 H 0.027 0.973 38 H 0.248 0.752 39 H 0.045 0.955 40 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.616 -12.809 -17.069 24.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.018 4.018 3 N -0.300 5.300 4 C 0.332 3.668 5 O -0.410 6.410 6 C 0.019 3.981 7 N -0.183 5.183 8 C -0.002 4.002 9 N -0.199 5.199 10 C 0.015 3.985 11 C -0.158 4.158 12 C -0.292 4.292 13 S 0.419 5.581 14 C -0.370 4.370 15 C 0.013 3.987 16 C -0.012 4.012 17 N -0.356 5.356 18 C -0.361 4.361 19 H 0.105 0.895 20 C -0.260 4.260 21 N -0.602 5.602 22 Si 0.813 3.187 23 H -0.216 1.216 24 H -0.187 1.187 25 H -0.217 1.217 26 C 0.018 3.982 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.265 0.735 33 H 0.207 0.793 34 H 0.236 0.764 35 H 0.155 0.845 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -10.938 -11.769 -16.041 22.704 hybrid contribution 0.428 0.647 -0.127 0.786 sum -10.510 -11.123 -16.167 22.261 Atomic orbital electron populations 1.21993 0.94275 1.03231 1.00679 1.22197 0.96074 0.79216 1.04335 1.47919 1.62138 1.15546 1.04408 1.18221 0.79662 0.85302 0.83640 1.90835 1.44002 1.20348 1.85808 1.20943 0.94315 0.91488 0.91318 1.69113 1.10025 1.07411 1.31768 1.25820 0.93172 1.00224 0.81028 1.68297 1.13189 1.08678 1.29718 1.20935 0.94027 0.91649 0.91880 1.20816 1.02781 0.93900 0.98296 1.26264 1.00940 1.01259 1.00713 1.85654 1.57391 1.15543 0.99488 1.24477 1.09251 1.04302 0.98931 1.23446 0.96933 0.92774 0.85549 1.22720 0.90439 0.92165 0.95855 1.45701 1.03921 1.40495 1.45451 1.19371 0.91867 1.12073 1.12755 0.89510 1.25752 0.95569 1.02366 1.02288 1.70087 0.99766 1.47527 1.42809 0.84969 0.77596 0.77743 0.78441 1.21591 1.18658 1.21685 1.22570 0.93459 0.87819 0.94381 0.94051 0.93297 0.89011 0.87690 0.89372 0.73452 0.79342 0.76376 0.84506 0.92620 0.95482 0.94271 0.93764 0.95830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.52 71.98 0.69 -2.06 16 2 C 0.10 2.33 5.72 86.38 0.49 2.82 16 3 N -0.57 -18.73 2.77 -799.61 -2.21 -20.94 16 4 C 0.55 20.00 7.10 86.89 0.62 20.61 16 5 O -0.53 -24.05 10.80 -3.75 -0.04 -24.09 16 6 C 0.18 5.32 6.54 42.16 0.28 5.59 16 7 N -0.47 -10.49 4.20 -189.08 -0.80 -11.29 16 8 C 0.29 5.14 12.22 181.07 2.21 7.35 16 9 N -0.48 -10.36 10.49 -191.10 -2.00 -12.36 16 10 C 0.16 3.83 7.23 40.97 0.30 4.12 16 11 C -0.13 -2.19 10.39 22.92 0.24 -1.95 16 12 C -0.15 -2.52 11.03 66.80 0.74 -1.78 16 13 S 0.16 4.28 21.61 -56.49 -1.22 3.06 16 14 C -0.25 -7.11 6.35 23.37 0.15 -6.96 16 15 C 0.12 4.63 4.80 45.55 0.22 4.85 16 16 C 0.11 5.21 8.10 83.18 0.67 5.89 16 17 N -0.63 -35.33 3.77 -738.03 -2.78 -38.11 16 18 C -0.23 -13.92 10.74 84.03 0.90 -13.01 16 19 H 0.09 4.91 7.83 -2.91 -0.02 4.89 16 20 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 21 N -0.95 -61.22 11.72 21.65 0.25 -60.97 16 22 Si 0.99 47.57 29.56 68.60 2.03 49.60 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 24 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 25 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 26 C 0.14 7.61 6.61 83.27 0.55 8.16 16 27 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 1.06 6.28 -2.38 -0.01 1.05 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.11 2.25 5.65 -2.39 -0.01 2.24 16 31 H 0.09 1.72 7.90 -2.39 -0.02 1.70 16 32 H 0.25 1.93 8.06 -2.91 -0.02 1.90 16 33 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.22 1.71 8.06 -2.91 -0.02 1.69 16 35 H 0.14 4.75 7.93 -2.39 -0.02 4.73 16 36 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.03 1.34 6.48 -2.39 -0.02 1.32 16 38 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.04 2.60 5.21 -2.39 -0.01 2.58 16 40 H 0.02 1.36 7.47 -2.38 -0.02 1.34 16 Total: -1.00 -80.96 339.75 2.83 -78.13 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 1.09 Total: 6.88 kcal Atomic # 6 Polarization: 21.58 SS G_CDS: 8.52 Total: 30.10 kcal Atomic # 7 Polarization: -136.14 SS G_CDS: -7.54 Total: -143.68 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.04 Total: -24.09 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -1.22 Total: 3.06 kcal Total: -80.96 2.83 -78.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950480232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.019 kcal (2) G-P(sol) polarization free energy of solvation -80.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds