Wall clock time and date at job start Tue Mar 31 2020 16:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.46945 * 2 1 4 4 C 1.34768 * 119.99930 * 100.06722 * 3 2 1 5 5 O 1.21625 * 119.99742 * 187.12885 * 4 3 2 6 6 C 1.47303 * 120.00089 * 7.13657 * 4 3 2 7 7 C 1.38363 * 120.57689 * 328.45309 * 6 4 3 8 8 C 1.38855 * 121.16175 * 180.02562 * 7 6 4 9 9 C 1.35580 * 122.43153 * 0.26435 * 8 7 6 10 10 C 1.41626 * 120.90097 * 359.46928 * 9 8 7 11 11 N 1.32401 * 131.03480 * 180.19777 * 10 9 8 12 12 S 1.55555 * 109.37628 * 180.29281 * 11 10 9 13 13 N 1.55565 * 100.17451 * 0.02562 * 12 11 10 14 14 C 1.31853 * 109.44533 * 359.97438 * 13 12 11 15 15 C 1.46501 * 119.99803 * 280.06864 * 3 2 1 16 16 C 1.53952 * 113.74259 * 222.82671 * 15 3 2 17 17 N 1.47808 * 86.03580 * 222.08469 * 16 15 3 18 18 C 1.36938 * 134.45580 * 204.63933 * 17 16 15 19 19 H 1.07997 * 120.00080 * 179.86997 * 18 17 16 20 20 C 1.38808 * 120.00009 * 359.87014 * 18 17 16 21 21 N 1.31622 * 119.99848 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00345 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47069 * 89.99781 * 22 20 18 24 24 H 1.48496 * 109.47136 * 210.00163 * 22 20 18 25 25 H 1.48504 * 109.46604 * 329.99779 * 22 20 18 26 26 C 1.47583 * 91.05404 * 24.54974 * 17 16 15 27 27 H 1.09001 * 109.46808 * 299.99633 * 1 2 3 28 28 H 1.08995 * 109.47080 * 60.00065 * 1 2 3 29 29 H 1.08999 * 109.46772 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46808 * 240.00367 * 2 1 3 31 31 H 1.08998 * 109.47507 * 120.00218 * 2 1 3 32 32 H 1.08007 * 119.41444 * 0.04809 * 7 6 4 33 33 H 1.08001 * 118.78614 * 179.97438 * 8 7 6 34 34 H 1.08000 * 119.55070 * 179.68144 * 9 8 7 35 35 H 1.08997 * 112.94737 * 354.41458 * 15 3 2 36 36 H 1.09000 * 113.76151 * 336.34920 * 16 15 3 37 37 H 1.08992 * 113.77176 * 107.74145 * 16 15 3 38 38 H 0.97005 * 119.99806 * 179.97438 * 21 20 18 39 39 H 1.09003 * 113.76417 * 221.15828 * 26 17 16 40 40 H 1.08994 * 113.77144 * 89.75309 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4353 1.9485 1.1492 5 8 2.7176 3.1313 1.1760 6 6 2.5492 1.1362 2.3726 7 6 1.6963 0.0688 2.5907 8 6 1.7925 -0.7047 3.7399 9 6 2.7119 -0.4604 4.7059 10 6 3.6361 0.6050 4.5777 11 7 4.6047 1.0169 5.3808 12 16 5.3126 2.2482 4.7464 13 7 4.4949 2.3875 3.4304 14 6 3.5723 1.4465 3.3852 15 6 2.0534 2.1457 -1.2492 16 6 3.3410 2.9686 -1.4365 17 7 2.4579 4.0475 -1.9275 18 6 2.6293 5.1252 -2.7547 19 1 1.7987 5.7831 -2.9635 20 6 3.8706 5.3722 -3.3248 21 7 4.8830 4.5706 -3.0698 22 14 4.1046 6.8428 -4.4526 23 1 4.5157 8.0222 -3.6493 24 1 5.1564 6.5355 -5.4548 25 1 2.8277 7.1397 -5.1502 26 6 1.3174 3.4957 -1.1706 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8935 -0.5138 0.8899 32 1 0.9426 -0.1671 1.8539 33 1 1.1067 -1.5287 3.8711 34 1 2.7420 -1.0889 5.5837 35 1 1.7835 1.5489 -2.1204 36 1 3.8491 3.2078 -0.5023 37 1 4.0117 2.5681 -2.1965 38 1 5.7504 4.7430 -3.4686 39 1 0.3756 3.5151 -1.7190 40 1 1.2300 3.8900 -0.1582 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957074884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:26 Heat of formation + Delta-G solvation = 150.971655 kcal Electronic energy + Delta-G solvation = -26344.919178 eV Core-core repulsion = 22676.961983 eV Total energy + Delta-G solvation = -3667.957195 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.15041 -39.87017 -37.16487 -36.53213 -35.19330 -33.78890 -32.06511 -30.46919 -30.33886 -27.68382 -27.23301 -24.60617 -24.20212 -23.40141 -22.59681 -22.14715 -20.28157 -19.55670 -18.56154 -17.79851 -16.84244 -16.50372 -16.05550 -15.88439 -15.49838 -15.24192 -14.74708 -14.55428 -14.09222 -13.94564 -13.61286 -12.89736 -12.77846 -12.46882 -12.23057 -12.10810 -11.97870 -11.85399 -11.64420 -11.57047 -11.37271 -11.18212 -11.05224 -10.92021 -10.79152 -10.77746 -10.52862 -10.03219 -9.90778 -9.39500 -9.26012 -8.88037 -8.60536 -8.48308 -8.04861 -6.68761 -5.63576 -2.93864 -0.37840 1.18915 1.32579 1.40446 1.64212 2.90146 3.14557 3.47109 3.51375 3.53231 3.57307 3.97839 4.48135 4.57256 4.58361 4.65180 4.87089 4.89882 4.93260 5.11545 5.31344 5.38173 5.49588 5.59522 5.61561 5.66918 5.73118 5.78198 5.89902 5.92784 6.01224 6.03525 6.16876 6.42463 6.62859 6.69168 6.71398 7.04814 7.39840 7.65752 7.70232 7.81966 8.10509 8.60400 9.17446 9.83766 10.75405 11.53819 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.003760 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.535852 B = 7444.038535 C = 9036.933895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.068 3.932 3 N -0.595 5.595 4 C 0.548 3.452 5 O -0.484 6.484 6 C -0.059 4.059 7 C -0.097 4.097 8 C -0.101 4.101 9 C -0.051 4.051 10 C 0.074 3.926 11 N -0.599 5.599 12 S 0.789 5.211 13 N -0.554 5.554 14 C 0.107 3.893 15 C 0.092 3.908 16 C 0.156 3.844 17 N -0.603 5.603 18 C -0.216 4.216 19 H 0.079 0.921 20 C -0.009 4.009 21 N -0.920 5.920 22 Si 0.911 3.089 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.112 3.888 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.171 0.829 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.105 0.895 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.252 0.748 39 H 0.036 0.964 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.381 -16.792 16.091 24.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.055 4.055 3 N -0.329 5.329 4 C 0.334 3.666 5 O -0.358 6.358 6 C -0.070 4.070 7 C -0.121 4.121 8 C -0.126 4.126 9 C -0.075 4.075 10 C -0.087 4.087 11 N -0.449 5.449 12 S 0.836 5.164 13 N -0.402 5.402 14 C -0.055 4.055 15 C -0.011 4.011 16 C 0.031 3.969 17 N -0.329 5.329 18 C -0.343 4.343 19 H 0.097 0.903 20 C -0.206 4.206 21 N -0.567 5.567 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.015 4.015 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.188 0.812 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.123 0.877 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.227 -14.601 16.652 22.547 hybrid contribution -1.112 -0.148 -1.137 1.597 sum -5.339 -14.749 15.515 22.063 Atomic orbital electron populations 1.22296 0.95843 1.02239 1.03279 1.22407 0.94481 0.84116 1.04517 1.47984 1.63406 1.13336 1.08156 1.17811 0.78939 0.87346 0.82506 1.90928 1.46418 1.14551 1.83862 1.20467 0.95301 0.97140 0.94047 1.22299 0.99124 0.92631 0.97996 1.20602 0.98598 1.00281 0.93091 1.20271 0.92755 0.94426 1.00089 1.21240 0.96646 0.99964 0.90818 1.72230 1.16083 1.20860 1.35732 1.78761 1.27656 1.13153 0.96841 1.72189 1.13905 1.27478 1.26644 1.22000 0.95751 0.91758 0.95972 1.24085 1.02264 0.91184 0.83579 1.22696 0.91346 0.85089 0.97818 1.45681 1.06677 1.29760 1.50815 1.18994 0.95600 1.01776 1.17981 0.90338 1.24769 0.95591 0.99189 1.01018 1.69842 1.00964 1.38445 1.47490 0.86131 0.77344 0.82287 0.80079 1.21714 1.21722 1.20673 1.22951 0.92001 0.90448 0.96107 0.92008 0.91263 0.91322 0.90432 0.88097 0.81195 0.83988 0.84243 0.87723 0.92984 0.91545 0.93816 0.94630 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 9.19 37.16 0.34 -1.12 16 2 C 0.07 0.71 5.59 -4.04 -0.02 0.68 16 3 N -0.59 -9.58 2.75 -169.20 -0.46 -10.04 16 4 C 0.55 10.07 6.87 -12.58 -0.09 9.98 16 5 O -0.48 -11.42 12.36 5.26 0.06 -11.36 16 6 C -0.06 -0.86 5.75 -102.50 -0.59 -1.45 16 7 C -0.10 -0.93 7.44 -39.31 -0.29 -1.23 16 8 C -0.10 -0.74 9.82 -40.30 -0.40 -1.13 16 9 C -0.05 -0.46 10.03 -39.24 -0.39 -0.85 16 10 C 0.07 0.95 7.17 -83.18 -0.60 0.36 16 11 N -0.60 -7.66 11.45 25.61 0.29 -7.37 16 12 S 0.79 9.53 23.60 -107.50 -2.54 7.00 16 13 N -0.55 -9.42 11.11 26.56 0.30 -9.13 16 14 C 0.11 1.69 7.04 -81.05 -0.57 1.12 16 15 C 0.09 1.82 4.57 -70.14 -0.32 1.50 16 16 C 0.16 4.07 6.79 -2.84 -0.02 4.05 16 17 N -0.60 -16.82 3.70 -177.88 -0.66 -17.48 16 18 C -0.22 -6.46 10.70 -15.06 -0.16 -6.63 16 19 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 21 N -0.92 -28.92 11.39 55.49 0.63 -28.29 16 22 Si 0.91 23.26 29.55 -169.99 -5.02 18.24 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.11 2.55 8.27 -2.96 -0.02 2.52 16 27 H 0.06 0.51 7.12 -51.93 -0.37 0.14 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.10 0.87 3.94 -52.04 -0.21 0.67 16 32 H 0.17 1.27 2.82 -52.48 -0.15 1.13 16 33 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 34 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.10 1.88 8.07 -51.93 -0.42 1.46 16 36 H 0.05 1.50 5.78 -51.93 -0.30 1.20 16 37 H 0.07 1.86 7.17 -51.93 -0.37 1.49 16 38 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.05 1.24 6.23 -51.93 -0.32 0.92 16 LS Contribution 337.89 15.07 5.09 5.09 Total: -1.00 -39.17 337.89 -9.75 -48.92 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -4.22 Total: -2.99 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -3.23 Total: 7.42 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: 0.10 Total: -72.31 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.06 Total: -11.36 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.24 kcal Atomic # 16 Polarization: 9.53 SS G_CDS: -2.54 Total: 7.00 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -39.17 -9.75 -48.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957074884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.892 kcal (2) G-P(sol) polarization free energy of solvation -39.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds