Wall clock time and date at job start Tue Mar 31 2020 16:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.46945 * 2 1 4 4 C 1.34768 * 119.99930 * 100.06722 * 3 2 1 5 5 O 1.21625 * 119.99742 * 187.12885 * 4 3 2 6 6 C 1.47303 * 120.00089 * 7.13657 * 4 3 2 7 7 C 1.38363 * 120.57689 * 328.45309 * 6 4 3 8 8 C 1.38855 * 121.16175 * 180.02562 * 7 6 4 9 9 C 1.35580 * 122.43153 * 0.26435 * 8 7 6 10 10 C 1.41626 * 120.90097 * 359.46928 * 9 8 7 11 11 N 1.32401 * 131.03480 * 180.19777 * 10 9 8 12 12 S 1.55555 * 109.37628 * 180.29281 * 11 10 9 13 13 N 1.55565 * 100.17451 * 0.02562 * 12 11 10 14 14 C 1.31853 * 109.44533 * 359.97438 * 13 12 11 15 15 C 1.46501 * 119.99803 * 280.06864 * 3 2 1 16 16 C 1.53952 * 113.74259 * 222.82671 * 15 3 2 17 17 N 1.47808 * 86.03580 * 222.08469 * 16 15 3 18 18 C 1.36938 * 134.45580 * 204.63933 * 17 16 15 19 19 H 1.07997 * 120.00080 * 179.86997 * 18 17 16 20 20 C 1.38808 * 120.00009 * 359.87014 * 18 17 16 21 21 N 1.31622 * 119.99848 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00345 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47069 * 89.99781 * 22 20 18 24 24 H 1.48496 * 109.47136 * 210.00163 * 22 20 18 25 25 H 1.48504 * 109.46604 * 329.99779 * 22 20 18 26 26 C 1.47583 * 91.05404 * 24.54974 * 17 16 15 27 27 H 1.09001 * 109.46808 * 299.99633 * 1 2 3 28 28 H 1.08995 * 109.47080 * 60.00065 * 1 2 3 29 29 H 1.08999 * 109.46772 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46808 * 240.00367 * 2 1 3 31 31 H 1.08998 * 109.47507 * 120.00218 * 2 1 3 32 32 H 1.08007 * 119.41444 * 0.04809 * 7 6 4 33 33 H 1.08001 * 118.78614 * 179.97438 * 8 7 6 34 34 H 1.08000 * 119.55070 * 179.68144 * 9 8 7 35 35 H 1.08997 * 112.94737 * 354.41458 * 15 3 2 36 36 H 1.09000 * 113.76151 * 336.34920 * 16 15 3 37 37 H 1.08992 * 113.77176 * 107.74145 * 16 15 3 38 38 H 0.97005 * 119.99806 * 179.97438 * 21 20 18 39 39 H 1.09003 * 113.76417 * 221.15828 * 26 17 16 40 40 H 1.08994 * 113.77144 * 89.75309 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4353 1.9485 1.1492 5 8 2.7176 3.1313 1.1760 6 6 2.5492 1.1362 2.3726 7 6 1.6963 0.0688 2.5907 8 6 1.7925 -0.7047 3.7399 9 6 2.7119 -0.4604 4.7059 10 6 3.6361 0.6050 4.5777 11 7 4.6047 1.0169 5.3808 12 16 5.3126 2.2482 4.7464 13 7 4.4949 2.3875 3.4304 14 6 3.5723 1.4465 3.3852 15 6 2.0534 2.1457 -1.2492 16 6 3.3410 2.9686 -1.4365 17 7 2.4579 4.0475 -1.9275 18 6 2.6293 5.1252 -2.7547 19 1 1.7987 5.7831 -2.9635 20 6 3.8706 5.3722 -3.3248 21 7 4.8830 4.5706 -3.0698 22 14 4.1046 6.8428 -4.4526 23 1 4.5157 8.0222 -3.6493 24 1 5.1564 6.5355 -5.4548 25 1 2.8277 7.1397 -5.1502 26 6 1.3174 3.4957 -1.1706 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8935 -0.5138 0.8899 32 1 0.9426 -0.1671 1.8539 33 1 1.1067 -1.5287 3.8711 34 1 2.7420 -1.0889 5.5837 35 1 1.7835 1.5489 -2.1204 36 1 3.8491 3.2078 -0.5023 37 1 4.0117 2.5681 -2.1965 38 1 5.7504 4.7430 -3.4686 39 1 0.3756 3.5151 -1.7190 40 1 1.2300 3.8900 -0.1582 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957074884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:25 Heat of formation + Delta-G solvation = 121.413590 kcal Electronic energy + Delta-G solvation = -26346.200912 eV Core-core repulsion = 22676.961983 eV Total energy + Delta-G solvation = -3669.238929 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.20180 -41.19506 -38.72002 -37.74852 -36.32684 -34.84126 -34.15582 -31.60346 -31.36293 -29.27628 -28.50081 -26.58924 -25.77541 -24.50886 -23.57081 -23.31782 -21.81489 -20.72852 -19.64916 -18.92737 -18.76275 -17.86030 -17.19156 -16.94797 -16.88070 -16.52355 -16.29614 -15.99406 -15.67074 -15.17607 -14.83712 -14.41244 -14.03226 -13.72843 -13.54243 -13.34222 -13.03473 -12.94184 -12.89362 -12.83530 -12.72578 -12.64711 -12.61659 -12.40500 -12.03751 -11.97984 -11.92979 -11.79907 -11.63329 -11.48625 -10.96948 -10.48599 -9.77731 -9.56407 -9.37397 -8.90569 -7.92266 -5.26241 -1.28264 0.31120 0.38132 0.42106 0.69403 1.39924 1.44693 1.53078 1.76237 1.96781 2.46739 2.54986 3.00598 3.26411 3.49781 3.53729 3.74812 3.83050 3.92086 4.00478 4.11041 4.19768 4.26896 4.42751 4.57117 4.63098 4.72824 4.81002 4.85917 4.96879 5.03149 5.06938 5.17555 5.21618 5.24325 5.31752 5.32066 5.46548 5.53513 5.80447 5.87522 5.90595 6.51851 6.88118 7.29138 7.57683 8.55826 9.25297 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.003760 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.535852 B = 7444.038535 C = 9036.933895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.059 3.941 3 N -0.593 5.593 4 C 0.543 3.457 5 O -0.556 6.556 6 C -0.116 4.116 7 C -0.049 4.049 8 C -0.087 4.087 9 C -0.042 4.042 10 C 0.062 3.938 11 N -0.601 5.601 12 S 0.822 5.178 13 N -0.628 5.628 14 C 0.086 3.914 15 C 0.132 3.868 16 C 0.154 3.846 17 N -0.632 5.632 18 C -0.236 4.236 19 H 0.084 0.916 20 C -0.071 4.071 21 N -0.956 5.956 22 Si 0.985 3.015 23 H -0.292 1.292 24 H -0.289 1.289 25 H -0.261 1.261 26 C 0.114 3.886 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.124 0.876 32 H 0.198 0.802 33 H 0.203 0.797 34 H 0.175 0.825 35 H 0.134 0.866 36 H 0.013 0.987 37 H 0.035 0.965 38 H 0.247 0.753 39 H 0.060 0.940 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.364 -20.507 17.020 28.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.061 4.061 3 N -0.325 5.325 4 C 0.332 3.668 5 O -0.434 6.434 6 C -0.126 4.126 7 C -0.073 4.073 8 C -0.111 4.111 9 C -0.066 4.066 10 C -0.098 4.098 11 N -0.451 5.451 12 S 0.871 5.129 13 N -0.477 5.477 14 C -0.076 4.076 15 C 0.027 3.973 16 C 0.028 3.972 17 N -0.359 5.359 18 C -0.365 4.365 19 H 0.102 0.898 20 C -0.263 4.263 21 N -0.605 5.605 22 Si 0.812 3.188 23 H -0.219 1.219 24 H -0.215 1.215 25 H -0.185 1.185 26 C -0.012 4.012 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.129 0.871 30 H 0.109 0.891 31 H 0.141 0.859 32 H 0.214 0.786 33 H 0.220 0.780 34 H 0.192 0.808 35 H 0.151 0.849 36 H 0.031 0.969 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -7.259 -18.380 17.604 26.466 hybrid contribution -0.227 0.886 -1.271 1.566 sum -7.486 -17.494 16.332 25.077 Atomic orbital electron populations 1.22300 0.93382 1.04802 1.02783 1.22863 0.96341 0.80591 1.06317 1.47976 1.63128 1.15271 1.06124 1.18502 0.77353 0.86946 0.84003 1.90881 1.49438 1.17793 1.85288 1.20248 0.98811 1.00166 0.93418 1.22753 0.96450 0.89430 0.98670 1.21214 0.98404 1.00618 0.90822 1.20882 0.91236 0.92846 1.01652 1.21724 0.97504 1.00791 0.89798 1.72245 1.16275 1.20950 1.35678 1.78364 1.26623 1.12731 0.95197 1.72032 1.16123 1.29867 1.29674 1.22470 0.95813 0.92004 0.97296 1.23356 0.96727 0.90886 0.86298 1.22456 0.93233 0.86676 0.94857 1.46130 1.08829 1.29841 1.51061 1.19475 0.96092 1.02720 1.18188 0.89777 1.25737 0.95223 1.02348 1.03014 1.70075 1.01193 1.40387 1.48873 0.84988 0.77900 0.78087 0.77807 1.21919 1.21488 1.18510 1.22985 0.91898 0.91643 0.94628 0.91806 0.92630 0.87092 0.89068 0.85922 0.78565 0.77973 0.80794 0.84865 0.96911 0.94628 0.94385 0.92156 0.95042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 9.19 71.98 0.66 -1.38 16 2 C 0.06 1.03 5.59 86.38 0.48 1.51 16 3 N -0.59 -18.95 2.75 -807.49 -2.22 -21.17 16 4 C 0.54 20.82 6.87 86.63 0.59 21.41 16 5 O -0.56 -28.59 12.36 -4.11 -0.05 -28.65 16 6 C -0.12 -3.38 5.75 -18.49 -0.11 -3.49 16 7 C -0.05 -0.75 7.44 22.45 0.17 -0.58 16 8 C -0.09 -0.72 9.82 21.80 0.21 -0.51 16 9 C -0.04 -0.57 10.03 22.49 0.23 -0.34 16 10 C 0.06 1.52 7.17 41.93 0.30 1.82 16 11 N -0.60 -15.06 11.45 -72.87 -0.83 -15.90 16 12 S 0.82 21.16 23.60 -56.49 -1.33 19.83 16 13 N -0.63 -23.18 11.11 -69.87 -0.78 -23.96 16 14 C 0.09 2.78 7.04 43.55 0.31 3.09 16 15 C 0.13 5.32 4.57 46.75 0.21 5.54 16 16 C 0.15 8.58 6.79 86.44 0.59 9.17 16 17 N -0.63 -36.95 3.70 -716.69 -2.65 -39.60 16 18 C -0.24 -14.69 10.70 84.03 0.90 -13.79 16 19 H 0.08 4.95 7.83 -2.91 -0.02 4.93 16 20 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 21 N -0.96 -63.29 11.39 21.65 0.25 -63.04 16 22 Si 0.98 49.28 29.55 68.60 2.03 51.30 16 23 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 24 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 25 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 26 C 0.11 5.36 8.27 86.49 0.72 6.08 16 27 H 0.06 0.75 7.12 -2.39 -0.02 0.73 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.12 1.57 3.94 -2.50 -0.01 1.56 16 32 H 0.20 1.84 2.82 -2.91 -0.01 1.84 16 33 H 0.20 -0.55 8.06 -2.91 -0.02 -0.57 16 34 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.13 4.63 8.07 -2.39 -0.02 4.61 16 36 H 0.01 0.83 5.78 -2.39 -0.01 0.82 16 37 H 0.04 2.15 7.17 -2.39 -0.02 2.13 16 38 H 0.25 15.77 8.31 -92.70 -0.77 15.00 16 39 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.03 1.63 6.23 -2.39 -0.01 1.61 16 Total: -1.00 -97.61 337.89 1.24 -96.37 By element: Atomic # 1 Polarization: -0.89 SS G_CDS: 1.10 Total: 0.21 kcal Atomic # 6 Polarization: 18.86 SS G_CDS: 5.73 Total: 24.59 kcal Atomic # 7 Polarization: -157.43 SS G_CDS: -6.23 Total: -163.66 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.05 Total: -28.65 kcal Atomic # 14 Polarization: 49.28 SS G_CDS: 2.03 Total: 51.30 kcal Atomic # 16 Polarization: 21.16 SS G_CDS: -1.33 Total: 19.83 kcal Total: -97.61 1.24 -96.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957074884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.786 kcal (2) G-P(sol) polarization free energy of solvation -97.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds