Wall clock time and date at job start Tue Mar 31 2020 16:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 119.99851 * 2 1 4 4 H 1.08001 * 119.99960 * 154.88713 * 3 2 1 5 5 C 1.38810 * 120.00475 * 334.88495 * 3 2 1 6 6 N 1.31621 * 119.99928 * 4.68622 * 5 3 2 7 7 Si 1.86802 * 120.00486 * 184.68655 * 5 3 2 8 8 H 1.48493 * 109.46974 * 60.00018 * 7 5 3 9 9 H 1.48498 * 109.47194 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47011 * 299.99943 * 7 5 3 11 11 C 1.46499 * 120.00055 * 180.02562 * 2 1 3 12 12 H 1.08999 * 110.63884 * 181.68655 * 11 2 1 13 13 C 1.55152 * 110.71792 * 305.02449 * 11 2 1 14 14 C 1.54912 * 101.58017 * 153.86772 * 13 11 2 15 15 N 1.47419 * 104.83089 * 322.98829 * 14 13 11 16 16 C 1.34778 * 125.64807 * 204.09529 * 15 14 13 17 17 O 1.21620 * 120.00128 * 174.66878 * 16 15 14 18 18 C 1.47376 * 120.00026 * 354.66717 * 16 15 14 19 19 C 1.47015 * 127.19471 * 335.03135 * 18 16 15 20 20 C 1.34174 * 105.95965 * 179.89204 * 19 18 16 21 21 O 1.34225 * 109.12153 * 0.37527 * 20 19 18 22 22 C 1.33652 * 110.90511 * 359.74894 * 21 20 19 23 23 C 1.50700 * 125.79643 * 180.02562 * 22 21 20 24 24 F 1.39905 * 109.46963 * 269.99390 * 23 22 21 25 25 F 1.39894 * 109.47600 * 30.00009 * 23 22 21 26 26 F 1.39900 * 109.46937 * 150.00065 * 23 22 21 27 27 C 1.47022 * 108.70491 * 24.12932 * 15 14 13 28 28 H 1.09002 * 109.46889 * 84.78285 * 1 2 3 29 29 H 1.08999 * 109.47224 * 204.78415 * 1 2 3 30 30 H 1.09003 * 109.47165 * 324.78627 * 1 2 3 31 31 H 0.96999 * 120.00194 * 179.97438 * 6 5 3 32 32 H 1.09000 * 111.00233 * 271.93431 * 13 11 2 33 33 H 1.08997 * 111.00820 * 35.79005 * 13 11 2 34 34 H 1.09003 * 110.36887 * 204.14954 * 14 13 11 35 35 H 1.08998 * 110.46411 * 81.87664 * 14 13 11 36 36 H 1.08001 * 127.02122 * 0.02562 * 19 18 16 37 37 H 1.07997 * 125.44333 * 180.12843 * 20 19 18 38 38 H 1.09000 * 109.88442 * 239.52512 * 27 15 14 39 39 H 1.09001 * 110.00986 * 118.43119 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1531 1.2301 0.3970 5 6 1.5541 2.3312 -0.5102 6 7 0.3001 2.2992 -0.9089 7 14 2.5322 3.9181 -0.6310 8 1 3.7122 3.7067 -1.5073 9 1 1.6742 4.9860 -1.2044 10 1 2.9874 4.3233 0.7231 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0916 0.0295 13 6 1.7507 -2.1610 1.1874 14 6 2.0638 -3.5785 0.6466 15 7 1.7325 -3.5166 -0.7885 16 6 1.4057 -4.5684 -1.5653 17 8 1.0561 -4.3890 -2.7162 18 6 1.4720 -5.9360 -1.0200 19 6 2.3069 -6.4092 0.0937 20 6 2.0315 -7.7150 0.2324 21 8 1.1239 -8.0732 -0.6893 22 6 0.7758 -7.0287 -1.4470 23 6 -0.2174 -7.0538 -2.5802 24 9 0.4463 -7.3506 -3.7755 25 9 -1.1863 -8.0312 -2.3296 26 9 -0.8340 -5.8026 -2.6875 27 6 1.8183 -2.1176 -1.2323 28 1 -0.3633 0.0934 -1.0234 29 1 -0.3633 -0.9330 0.4308 30 1 -0.3634 0.8396 0.5926 31 1 -0.1162 3.0996 -1.2651 32 1 2.3373 -1.9452 2.0804 33 1 0.6850 -2.0446 1.3844 34 1 1.4431 -4.3214 1.1476 35 1 3.1195 -3.8136 0.7824 36 1 2.9989 -5.8245 0.6818 37 1 2.4729 -8.3737 0.9656 38 1 0.8541 -1.7930 -1.6236 39 1 2.5835 -2.0167 -2.0019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971604549.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:36 Heat of formation + Delta-G solvation = -119.387213 kcal Electronic energy + Delta-G solvation = -29365.664733 eV Core-core repulsion = 24669.081535 eV Total energy + Delta-G solvation = -4696.583197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.31727 -47.87100 -47.76431 -43.12307 -39.71860 -37.47747 -34.89598 -33.51162 -31.62810 -31.36800 -29.80778 -28.15247 -26.33333 -26.05950 -24.42128 -22.84277 -22.20886 -21.69663 -20.10353 -19.25083 -18.76468 -18.53010 -18.12781 -17.30607 -17.13251 -16.62943 -16.04317 -15.80621 -15.29285 -14.87483 -14.65379 -14.56985 -14.23629 -14.03308 -13.94630 -13.90916 -13.71793 -13.44622 -13.28680 -13.23335 -12.70328 -12.57442 -12.40871 -12.22353 -11.89663 -11.53065 -10.91258 -10.85195 -10.61414 -10.42586 -10.37068 -10.28347 -9.99746 -9.90259 -9.87097 -9.49442 -8.56014 -8.40168 -6.84212 -5.80008 -3.28550 0.60811 1.57051 1.60971 2.73899 2.93940 3.13183 3.35638 3.41357 3.41877 3.44508 4.02285 4.10119 4.24242 4.32265 4.43055 4.83834 4.89650 4.95584 5.18406 5.21589 5.26225 5.41444 5.57284 5.68775 5.73787 5.84532 5.93474 6.27773 6.29592 6.31423 6.45617 6.60796 6.80947 6.84399 7.43911 7.63824 7.71131 7.81643 8.18060 8.34544 9.17674 9.77490 10.27086 11.23876 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.022505 B = 0.003006 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.852185 B = 9311.136860 C = 9975.881107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.588 5.588 3 C -0.265 4.265 4 H 0.071 0.929 5 C 0.010 3.990 6 N -0.905 5.905 7 Si 0.907 3.093 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.174 3.826 12 H 0.080 0.920 13 C -0.155 4.155 14 C 0.099 3.901 15 N -0.598 5.598 16 C 0.583 3.417 17 O -0.523 6.523 18 C -0.141 4.141 19 C -0.193 4.193 20 C 0.001 3.999 21 O -0.150 6.150 22 C -0.057 4.057 23 C 0.561 3.439 24 F -0.160 7.160 25 F -0.171 7.171 26 F -0.138 7.138 27 C 0.087 3.913 28 H 0.025 0.975 29 H -0.005 1.005 30 H 0.057 0.943 31 H 0.255 0.745 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.174 0.826 37 H 0.223 0.777 38 H 0.076 0.924 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.064 -21.651 4.787 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.309 5.309 3 C -0.394 4.394 4 H 0.088 0.912 5 C -0.189 4.189 6 N -0.549 5.549 7 Si 0.736 3.264 8 H -0.208 1.208 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.195 4.195 14 C -0.025 4.025 15 N -0.331 5.331 16 C 0.370 3.630 17 O -0.401 6.401 18 C -0.146 4.146 19 C -0.211 4.211 20 C -0.066 4.066 21 O -0.045 6.045 22 C -0.110 4.110 23 C 0.506 3.494 24 F -0.141 7.141 25 F -0.153 7.153 26 F -0.119 7.119 27 C -0.037 4.037 28 H 0.044 0.956 29 H 0.014 0.986 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.191 0.809 37 H 0.239 0.761 38 H 0.095 0.905 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.568 -21.669 3.978 22.180 hybrid contribution 0.518 0.935 -0.143 1.079 sum 3.086 -20.734 3.834 21.310 Atomic orbital electron populations 1.20905 0.82083 0.95634 0.99471 1.43899 1.02061 0.99782 1.85154 1.19172 0.99313 0.86057 1.34853 0.91160 1.25188 0.96452 0.98899 0.98360 1.70085 1.10818 1.28243 1.45749 0.86316 0.79357 0.82829 0.77913 1.20838 1.21553 1.20946 1.21356 0.96435 0.85973 0.89927 0.90221 1.23387 1.03074 0.92927 1.00085 1.22518 0.99754 0.99471 0.80720 1.48293 1.66519 1.07722 1.10576 1.16800 0.78630 0.82333 0.85234 1.90880 1.46854 1.85217 1.17157 1.21515 0.99824 0.94502 0.98721 1.23193 1.03516 0.95219 0.99221 1.24272 0.92153 0.96712 0.93462 1.83750 1.48636 1.34919 1.37194 1.22087 1.03531 0.87247 0.98173 1.16641 0.78255 0.74931 0.79596 1.93278 1.80506 1.93001 1.47299 1.93241 1.64865 1.63100 1.94055 1.93377 1.82542 1.40095 1.95881 1.23019 1.02737 0.77933 1.00045 0.95628 0.98633 0.92465 0.93468 0.90242 0.90244 0.91055 0.91463 0.80916 0.76104 0.90534 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.94 7.70 59.85 0.46 4.40 16 2 N -0.59 -14.03 2.94 -171.39 -0.50 -14.54 16 3 C -0.26 -6.96 9.61 -15.06 -0.14 -7.10 16 4 H 0.07 1.77 7.82 -52.49 -0.41 1.36 16 5 C 0.01 0.27 5.39 -17.43 -0.09 0.17 16 6 N -0.90 -25.77 10.10 55.49 0.56 -25.21 16 7 Si 0.91 21.24 29.56 -169.99 -5.02 16.21 16 8 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 C 0.17 3.29 3.44 -66.10 -0.23 3.06 16 12 H 0.08 1.46 7.94 -51.93 -0.41 1.05 16 13 C -0.15 -2.30 6.59 -24.58 -0.16 -2.47 16 14 C 0.10 1.21 5.26 -2.53 -0.01 1.19 16 15 N -0.60 -9.61 3.33 -171.80 -0.57 -10.18 16 16 C 0.58 9.85 7.34 -12.54 -0.09 9.75 16 17 O -0.52 -10.66 14.72 5.26 0.08 -10.58 16 18 C -0.14 -1.87 5.85 -103.28 -0.60 -2.47 16 19 C -0.19 -1.69 9.25 -37.46 -0.35 -2.04 16 20 C 0.00 0.01 12.03 29.30 0.35 0.36 16 21 O -0.15 -1.53 10.51 7.63 0.08 -1.45 16 22 C -0.06 -0.73 6.69 -34.96 -0.23 -0.96 16 23 C 0.56 7.72 3.23 36.01 0.12 7.84 16 24 F -0.16 -2.26 17.30 2.25 0.04 -2.22 16 25 F -0.17 -2.13 17.29 2.25 0.04 -2.09 16 26 F -0.14 -2.24 14.29 2.25 0.03 -2.20 16 27 C 0.09 1.64 6.51 -3.07 -0.02 1.62 16 28 H 0.03 0.68 7.40 -51.93 -0.38 0.30 16 29 H 0.00 -0.10 6.13 -51.93 -0.32 -0.42 16 30 H 0.06 1.50 6.97 -51.93 -0.36 1.14 16 31 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.30 6.14 -51.93 -0.32 0.98 16 34 H 0.07 0.75 6.95 -51.93 -0.36 0.39 16 35 H 0.07 0.66 7.35 -51.93 -0.38 0.28 16 36 H 0.17 1.12 6.28 -52.49 -0.33 0.79 16 37 H 0.22 0.40 8.06 -52.49 -0.42 -0.02 16 38 H 0.08 1.69 7.06 -51.93 -0.37 1.32 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -31.97 332.96 -5.31 -37.28 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -4.05 Total: -3.41 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: -1.01 Total: 13.36 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: -0.52 Total: -49.92 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.16 Total: -12.03 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 0.11 Total: -6.51 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.97 -5.31 -37.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971604549.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.107 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds