Wall clock time and date at job start Tue Mar 31 2020 16:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 119.99851 * 2 1 4 4 H 1.08001 * 119.99960 * 154.88713 * 3 2 1 5 5 C 1.38810 * 120.00475 * 334.88495 * 3 2 1 6 6 N 1.31621 * 119.99928 * 4.68622 * 5 3 2 7 7 Si 1.86802 * 120.00486 * 184.68655 * 5 3 2 8 8 H 1.48493 * 109.46974 * 60.00018 * 7 5 3 9 9 H 1.48498 * 109.47194 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47011 * 299.99943 * 7 5 3 11 11 C 1.46499 * 120.00055 * 180.02562 * 2 1 3 12 12 H 1.08999 * 110.63884 * 181.68655 * 11 2 1 13 13 C 1.55152 * 110.71792 * 305.02449 * 11 2 1 14 14 C 1.54912 * 101.58017 * 153.86772 * 13 11 2 15 15 N 1.47419 * 104.83089 * 322.98829 * 14 13 11 16 16 C 1.34778 * 125.64807 * 204.09529 * 15 14 13 17 17 O 1.21620 * 120.00128 * 174.66878 * 16 15 14 18 18 C 1.47376 * 120.00026 * 354.66717 * 16 15 14 19 19 C 1.47015 * 127.19471 * 335.03135 * 18 16 15 20 20 C 1.34174 * 105.95965 * 179.89204 * 19 18 16 21 21 O 1.34225 * 109.12153 * 0.37527 * 20 19 18 22 22 C 1.33652 * 110.90511 * 359.74894 * 21 20 19 23 23 C 1.50700 * 125.79643 * 180.02562 * 22 21 20 24 24 F 1.39905 * 109.46963 * 269.99390 * 23 22 21 25 25 F 1.39894 * 109.47600 * 30.00009 * 23 22 21 26 26 F 1.39900 * 109.46937 * 150.00065 * 23 22 21 27 27 C 1.47022 * 108.70491 * 24.12932 * 15 14 13 28 28 H 1.09002 * 109.46889 * 84.78285 * 1 2 3 29 29 H 1.08999 * 109.47224 * 204.78415 * 1 2 3 30 30 H 1.09003 * 109.47165 * 324.78627 * 1 2 3 31 31 H 0.96999 * 120.00194 * 179.97438 * 6 5 3 32 32 H 1.09000 * 111.00233 * 271.93431 * 13 11 2 33 33 H 1.08997 * 111.00820 * 35.79005 * 13 11 2 34 34 H 1.09003 * 110.36887 * 204.14954 * 14 13 11 35 35 H 1.08998 * 110.46411 * 81.87664 * 14 13 11 36 36 H 1.08001 * 127.02122 * 0.02562 * 19 18 16 37 37 H 1.07997 * 125.44333 * 180.12843 * 20 19 18 38 38 H 1.09000 * 109.88442 * 239.52512 * 27 15 14 39 39 H 1.09001 * 110.00986 * 118.43119 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1531 1.2301 0.3970 5 6 1.5541 2.3312 -0.5102 6 7 0.3001 2.2992 -0.9089 7 14 2.5322 3.9181 -0.6310 8 1 3.7122 3.7067 -1.5073 9 1 1.6742 4.9860 -1.2044 10 1 2.9874 4.3233 0.7231 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0916 0.0295 13 6 1.7507 -2.1610 1.1874 14 6 2.0638 -3.5785 0.6466 15 7 1.7325 -3.5166 -0.7885 16 6 1.4057 -4.5684 -1.5653 17 8 1.0561 -4.3890 -2.7162 18 6 1.4720 -5.9360 -1.0200 19 6 2.3069 -6.4092 0.0937 20 6 2.0315 -7.7150 0.2324 21 8 1.1239 -8.0732 -0.6893 22 6 0.7758 -7.0287 -1.4470 23 6 -0.2174 -7.0538 -2.5802 24 9 0.4463 -7.3506 -3.7755 25 9 -1.1863 -8.0312 -2.3296 26 9 -0.8340 -5.8026 -2.6875 27 6 1.8183 -2.1176 -1.2323 28 1 -0.3633 0.0934 -1.0234 29 1 -0.3633 -0.9330 0.4308 30 1 -0.3634 0.8396 0.5926 31 1 -0.1162 3.0996 -1.2651 32 1 2.3373 -1.9452 2.0804 33 1 0.6850 -2.0446 1.3844 34 1 1.4431 -4.3214 1.1476 35 1 3.1195 -3.8136 0.7824 36 1 2.9989 -5.8245 0.6818 37 1 2.4729 -8.3737 0.9656 38 1 0.8541 -1.7930 -1.6236 39 1 2.5835 -2.0167 -2.0019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971604549.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:35 Heat of formation + Delta-G solvation = -140.190542 kcal Electronic energy + Delta-G solvation = -29366.566833 eV Core-core repulsion = 24669.081535 eV Total energy + Delta-G solvation = -4697.485298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.39795 -48.92004 -48.90500 -43.89586 -41.03106 -38.93915 -36.60867 -34.46485 -33.34501 -32.17070 -31.28422 -29.59075 -28.09617 -27.35527 -25.71069 -24.33659 -23.31439 -22.63647 -21.13122 -20.80791 -19.83192 -19.57154 -19.20431 -18.98793 -18.32799 -17.63332 -17.27542 -17.02035 -16.64152 -16.27873 -15.76613 -15.70538 -15.57319 -15.29844 -15.08366 -15.03711 -15.01410 -14.72121 -14.66436 -14.42407 -14.15891 -13.86645 -13.73791 -13.38643 -13.29584 -13.08770 -12.69343 -12.48538 -12.38698 -12.21469 -12.12059 -11.81645 -11.48631 -11.33748 -11.08802 -10.59764 -10.22136 -9.72188 -8.80042 -7.84619 -5.34642 -0.33475 0.69288 0.96109 1.48080 1.51238 1.57166 1.70038 1.82067 1.95820 2.50421 2.51496 3.03711 3.08979 3.27243 3.31309 3.53141 3.58976 3.83961 3.94731 4.06972 4.28680 4.29627 4.33495 4.44904 4.63413 4.69606 4.80552 4.87710 5.02316 5.13352 5.17847 5.23759 5.34318 5.45473 5.60989 5.65072 5.76292 6.32761 6.39681 6.90588 7.14555 7.83723 8.29471 9.18653 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.022505 B = 0.003006 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.852185 B = 9311.136860 C = 9975.881107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.605 5.605 3 C -0.268 4.268 4 H 0.084 0.916 5 C -0.051 4.051 6 N -0.941 5.941 7 Si 0.971 3.029 8 H -0.277 1.277 9 H -0.300 1.300 10 H -0.271 1.271 11 C 0.167 3.833 12 H 0.091 0.909 13 C -0.142 4.142 14 C 0.102 3.898 15 N -0.598 5.598 16 C 0.576 3.424 17 O -0.573 6.573 18 C -0.158 4.158 19 C -0.196 4.196 20 C 0.034 3.966 21 O -0.149 6.149 22 C -0.073 4.073 23 C 0.556 3.444 24 F -0.167 7.167 25 F -0.165 7.165 26 F -0.159 7.159 27 C 0.098 3.902 28 H -0.013 1.013 29 H 0.022 0.978 30 H 0.030 0.970 31 H 0.247 0.753 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.203 0.797 37 H 0.280 0.720 38 H 0.034 0.966 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.692 -24.183 7.846 26.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.326 5.326 3 C -0.398 4.398 4 H 0.101 0.899 5 C -0.245 4.245 6 N -0.587 5.587 7 Si 0.799 3.201 8 H -0.203 1.203 9 H -0.226 1.226 10 H -0.196 1.196 11 C 0.059 3.941 12 H 0.109 0.891 13 C -0.182 4.182 14 C -0.019 4.019 15 N -0.330 5.330 16 C 0.366 3.634 17 O -0.454 6.454 18 C -0.164 4.164 19 C -0.215 4.215 20 C -0.032 4.032 21 O -0.044 6.044 22 C -0.127 4.127 23 C 0.501 3.499 24 F -0.148 7.148 25 F -0.147 7.147 26 F -0.140 7.140 27 C -0.028 4.028 28 H 0.006 0.994 29 H 0.040 0.960 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.125 0.875 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.220 0.780 37 H 0.296 0.704 38 H 0.052 0.948 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.235 -24.255 7.086 25.805 hybrid contribution -0.266 1.588 -1.058 1.927 sum 4.969 -22.666 6.028 23.975 Atomic orbital electron populations 1.20490 0.83002 0.95663 0.96805 1.44075 1.01878 1.01162 1.85529 1.19622 0.99598 0.86965 1.33568 0.89877 1.25980 0.97315 1.02300 0.98948 1.70292 1.12415 1.28486 1.47521 0.85286 0.77745 0.78858 0.78217 1.20293 1.22626 1.19643 1.21591 0.96566 0.84481 0.91499 0.89096 1.23264 1.02354 0.93395 0.99170 1.22817 1.02814 0.98325 0.77927 1.48311 1.66302 1.06136 1.12286 1.17383 0.77475 0.83844 0.84735 1.90848 1.48908 1.86196 1.19497 1.21358 1.01844 0.92285 1.00865 1.23496 1.03651 0.96200 0.98129 1.25437 0.89157 0.96809 0.91782 1.83788 1.49279 1.33971 1.37403 1.21720 1.04148 0.88105 0.98735 1.16817 0.78722 0.74237 0.80127 1.93253 1.80608 1.92964 1.48023 1.93242 1.64776 1.62638 1.93995 1.93328 1.83063 1.41589 1.96061 1.22586 0.99990 0.80334 0.99864 0.99420 0.96016 0.95168 0.94368 0.87473 0.91949 0.88218 0.87359 0.78022 0.70445 0.94768 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.34 7.70 127.77 0.98 10.32 16 2 N -0.60 -29.21 2.94 -696.16 -2.05 -31.25 16 3 C -0.27 -14.11 9.61 84.03 0.81 -13.30 16 4 H 0.08 4.08 7.82 -2.91 -0.02 4.06 16 5 C -0.05 -2.79 5.39 84.86 0.46 -2.33 16 6 N -0.94 -55.91 10.10 21.65 0.22 -55.69 16 7 Si 0.97 44.24 29.56 68.60 2.03 46.27 16 8 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 9 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 11 C 0.17 6.16 3.44 46.18 0.16 6.32 16 12 H 0.09 3.14 7.94 -2.39 -0.02 3.12 16 13 C -0.14 -3.80 6.59 31.99 0.21 -3.59 16 14 C 0.10 2.08 5.26 86.86 0.46 2.53 16 15 N -0.60 -18.54 3.33 -815.71 -2.71 -21.25 16 16 C 0.58 19.37 7.34 86.65 0.64 20.01 16 17 O -0.57 -24.50 14.72 -4.09 -0.06 -24.56 16 18 C -0.16 -3.88 5.85 -18.99 -0.11 -3.99 16 19 C -0.20 -2.43 9.25 23.65 0.22 -2.21 16 20 C 0.03 0.27 12.03 66.89 0.80 1.07 16 21 O -0.15 -2.51 10.51 4.37 0.05 -2.46 16 22 C -0.07 -1.78 6.69 25.26 0.17 -1.61 16 23 C 0.56 15.57 3.23 71.24 0.23 15.80 16 24 F -0.17 -4.89 17.30 44.97 0.78 -4.12 16 25 F -0.17 -4.10 17.29 44.97 0.78 -3.32 16 26 F -0.16 -5.45 14.29 44.97 0.64 -4.81 16 27 C 0.10 3.78 6.51 86.73 0.56 4.35 16 28 H -0.01 -0.72 7.40 -2.39 -0.02 -0.74 16 29 H 0.02 0.95 6.13 -2.39 -0.01 0.94 16 30 H 0.03 1.65 6.97 -2.39 -0.02 1.63 16 31 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 32 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.06 1.91 6.14 -2.39 -0.01 1.89 16 34 H 0.10 1.56 6.95 -2.39 -0.02 1.54 16 35 H 0.11 1.42 7.35 -2.39 -0.02 1.40 16 36 H 0.20 1.20 6.28 -2.91 -0.02 1.19 16 37 H 0.28 -1.29 8.06 -2.91 -0.02 -1.32 16 38 H 0.03 1.60 7.06 -2.39 -0.02 1.59 16 39 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -76.74 332.96 6.37 -70.37 By element: Atomic # 1 Polarization: -3.65 SS G_CDS: 1.11 Total: -2.54 kcal Atomic # 6 Polarization: 27.78 SS G_CDS: 5.59 Total: 33.37 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -4.54 Total: -108.20 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.01 Total: -27.03 kcal Atomic # 9 Polarization: -14.44 SS G_CDS: 2.20 Total: -12.25 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -76.74 6.37 -70.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971604549.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.818 kcal (2) G-P(sol) polarization free energy of solvation -76.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds