Wall clock time and date at job start Tue Mar 31 2020 16:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36936 * 119.99692 * 2 1 4 4 H 1.08000 * 119.99987 * 203.23884 * 3 2 1 5 5 C 1.38819 * 120.00003 * 23.24809 * 3 2 1 6 6 N 1.31620 * 119.99976 * 13.76210 * 5 3 2 7 7 Si 1.86797 * 119.99868 * 193.76584 * 5 3 2 8 8 H 1.48505 * 109.47138 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47332 * 119.99534 * 7 5 3 10 10 H 1.48508 * 109.47051 * 239.99987 * 7 5 3 11 11 C 1.46502 * 120.00253 * 179.97438 * 2 1 3 12 12 H 1.08995 * 110.88565 * 183.88378 * 11 2 1 13 13 C 1.55155 * 111.00240 * 60.00212 * 11 2 1 14 14 C 1.54323 * 102.94304 * 206.42554 * 13 11 2 15 15 N 1.47024 * 107.26968 * 22.19460 * 14 13 11 16 16 C 1.34774 * 125.64537 * 181.02683 * 15 14 13 17 17 O 1.21511 * 120.00193 * 180.02562 * 16 15 14 18 18 C 1.48211 * 120.00116 * 0.02562 * 16 15 14 19 19 N 1.32973 * 120.61610 * 0.02562 * 18 16 15 20 20 C 1.31772 * 120.90610 * 180.02562 * 19 18 16 21 21 N 1.31181 * 122.65156 * 0.02562 * 20 19 18 22 22 C 1.34527 * 121.10622 * 359.97438 * 21 20 19 23 23 C 1.44791 * 130.27746 * 180.02562 * 22 21 20 24 24 C 1.32199 * 114.91493 * 180.02562 * 23 22 21 25 25 S 1.75367 * 111.45149 * 359.97438 * 24 23 22 26 26 C 1.40457 * 120.61248 * 179.72332 * 18 16 15 27 27 C 1.47426 * 108.70423 * 1.28467 * 15 14 13 28 28 H 1.08996 * 109.47378 * 275.15718 * 1 2 3 29 29 H 1.08997 * 109.46987 * 35.15929 * 1 2 3 30 30 H 1.09005 * 109.46501 * 155.15468 * 1 2 3 31 31 H 0.97000 * 119.99996 * 180.02562 * 6 5 3 32 32 H 1.09000 * 110.71792 * 88.06170 * 13 11 2 33 33 H 1.09004 * 110.87595 * 324.86032 * 13 11 2 34 34 H 1.08998 * 109.88003 * 262.77839 * 14 13 11 35 35 H 1.08996 * 110.01505 * 141.68452 * 14 13 11 36 36 H 1.07997 * 118.67290 * 179.97438 * 20 19 18 37 37 H 1.08000 * 122.54220 * 359.97438 * 23 22 21 38 38 H 1.08004 * 124.27809 * 179.97438 * 24 23 22 39 39 H 1.09000 * 110.36254 * 94.48399 * 27 15 14 40 40 H 1.08996 * 110.36920 * 216.80196 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1639 1.2239 -0.3690 5 6 1.5400 2.3393 0.4745 6 7 0.4239 2.2565 1.1671 7 14 2.3038 4.0088 0.1300 8 1 3.5470 3.8304 -0.6625 9 1 1.3438 4.8439 -0.6357 10 1 2.6283 4.6794 1.4147 11 6 2.1976 -1.2687 0.0006 12 1 3.2718 -1.0971 0.0695 13 6 1.8485 -2.1130 -1.2535 14 6 2.1065 -3.5588 -0.7796 15 7 2.0265 -3.5578 0.6885 16 6 2.2132 -4.6281 1.4860 17 8 2.1219 -4.5105 2.6919 18 6 2.5299 -5.9485 0.8921 19 7 2.6332 -6.0911 -0.4259 20 6 2.9141 -7.2625 -0.9601 21 7 3.1053 -8.3415 -0.2391 22 6 3.0232 -8.3041 1.1032 23 6 3.1953 -9.3578 2.0812 24 6 3.0443 -8.9801 3.3391 25 16 2.6712 -7.2705 3.4551 26 6 2.7327 -7.0712 1.7114 27 6 1.7021 -2.1935 1.1433 28 1 -0.3634 0.0924 1.0234 29 1 -0.3633 0.8402 -0.5918 30 1 -0.3632 -0.9326 -0.4318 31 1 -0.0023 3.0624 1.4984 32 1 2.5045 -1.8570 -2.0855 33 1 0.8034 -1.9795 -1.5330 34 1 3.0982 -3.8814 -1.0966 35 1 1.3503 -4.2269 -1.1916 36 1 2.9890 -7.3373 -2.0348 37 1 3.4285 -10.3753 1.8041 38 1 3.1387 -9.6410 4.1882 39 1 0.6264 -2.0857 1.2822 40 1 2.2296 -1.9670 2.0698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971658139.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:17 Heat of formation + Delta-G solvation = 83.682113 kcal Electronic energy + Delta-G solvation = -25603.026596 eV Core-core repulsion = 21932.151508 eV Total energy + Delta-G solvation = -3670.875088 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.45462 -39.63224 -37.52810 -36.50454 -34.87559 -33.62921 -31.63137 -30.96205 -29.80843 -28.09236 -26.11645 -25.69909 -25.24846 -23.45150 -22.39289 -21.89344 -19.93836 -19.34660 -18.65028 -17.73043 -17.08488 -16.96898 -16.09361 -16.02113 -15.45887 -15.18823 -14.83142 -14.62563 -14.45320 -14.03707 -13.37930 -13.31599 -13.12303 -12.77540 -12.63213 -12.47666 -12.40971 -11.97766 -11.73536 -11.44303 -11.14343 -10.96581 -10.89312 -10.76729 -10.54656 -10.52786 -10.33538 -10.25793 -9.89666 -9.81897 -9.69492 -9.51894 -8.63366 -8.48982 -8.25672 -6.83053 -5.78990 -3.26916 -0.09856 0.26213 1.04886 1.61865 1.64781 2.72952 2.82775 3.35184 3.42658 3.44283 3.44746 3.52172 3.68279 4.05733 4.33532 4.44650 4.66375 4.77662 5.04744 5.13273 5.25988 5.41555 5.43113 5.52275 5.59432 5.65018 5.82217 5.85010 5.96490 6.10996 6.28186 6.36022 6.39328 6.50671 6.58312 6.74031 6.85804 7.30049 7.55888 7.62506 7.67440 7.76108 8.04937 8.32519 9.15697 9.77981 10.26847 11.25213 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.025892 B = 0.002699 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.156063 B =10369.814669 C =11031.605679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.584 5.584 3 C -0.261 4.261 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.158 4.158 14 C 0.117 3.883 15 N -0.582 5.582 16 C 0.568 3.432 17 O -0.526 6.526 18 C 0.200 3.800 19 N -0.478 5.478 20 C 0.293 3.707 21 N -0.480 5.480 22 C 0.167 3.833 23 C -0.124 4.124 24 C -0.184 4.184 25 S 0.218 5.782 26 C -0.231 4.231 27 C 0.085 3.915 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.003 0.997 31 H 0.253 0.747 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.208 0.792 37 H 0.158 0.842 38 H 0.181 0.819 39 H 0.074 0.926 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.232 -22.979 -0.900 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.304 5.304 3 C -0.390 4.390 4 H 0.089 0.911 5 C -0.194 4.194 6 N -0.547 5.547 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.198 4.198 14 C -0.006 4.006 15 N -0.313 5.313 16 C 0.353 3.647 17 O -0.402 6.402 18 C 0.040 3.960 19 N -0.196 5.196 20 C 0.002 3.998 21 N -0.195 5.195 22 C 0.020 3.980 23 C -0.154 4.154 24 C -0.322 4.322 25 S 0.482 5.518 26 C -0.352 4.352 27 C -0.039 4.039 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.021 0.979 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.224 0.776 37 H 0.175 0.825 38 H 0.198 0.802 39 H 0.092 0.908 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.871 -21.941 0.086 22.280 hybrid contribution 0.492 -0.082 -0.596 0.777 sum 4.363 -22.024 -0.510 22.457 Atomic orbital electron populations 1.20824 0.82437 0.95694 0.99706 1.43875 1.01891 0.99845 1.84769 1.19253 0.98799 0.85138 1.35856 0.91136 1.25071 0.97931 0.98711 0.97678 1.70080 1.19932 1.27365 1.37282 0.86162 0.78558 0.84091 0.77566 1.20229 1.21549 1.21676 1.21519 0.96430 0.85642 0.90150 0.90241 1.23316 1.02827 0.93173 1.00488 1.22164 1.02118 0.97834 0.78478 1.48362 1.65382 1.09020 1.08538 1.17317 0.79399 0.82167 0.85847 1.90794 1.52638 1.83712 1.13105 1.21168 0.93036 0.92971 0.88843 1.68784 1.12908 1.27143 1.10726 1.24883 0.91633 0.82208 1.01122 1.68212 1.13798 1.32510 1.04962 1.20414 0.95935 0.90878 0.90742 1.20481 1.05474 0.99495 0.89977 1.25936 1.03228 1.02031 1.00963 1.85125 1.69975 0.99891 0.96849 1.24345 1.09908 0.98918 1.02076 1.23319 1.01375 0.78462 1.00702 0.94836 0.93867 0.97873 0.93637 0.90487 0.90615 0.90869 0.91182 0.77600 0.82479 0.80169 0.90763 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.72 7.56 59.85 0.45 4.17 16 2 N -0.58 -13.96 2.96 -170.89 -0.51 -14.47 16 3 C -0.26 -6.92 9.60 -15.06 -0.14 -7.07 16 4 H 0.07 1.83 7.87 -52.49 -0.41 1.41 16 5 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 6 N -0.90 -25.74 10.77 55.49 0.60 -25.14 16 7 Si 0.91 21.38 29.58 -169.99 -5.03 16.36 16 8 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 C 0.17 3.39 3.55 -65.66 -0.23 3.16 16 12 H 0.08 1.58 7.96 -51.93 -0.41 1.16 16 13 C -0.16 -2.50 6.49 -24.90 -0.16 -2.66 16 14 C 0.12 1.66 5.42 -3.06 -0.02 1.64 16 15 N -0.58 -9.71 3.32 -171.36 -0.57 -10.28 16 16 C 0.57 9.62 7.85 -12.16 -0.10 9.52 16 17 O -0.53 -9.98 15.46 5.36 0.08 -9.90 16 18 C 0.20 2.91 6.77 -82.44 -0.56 2.35 16 19 N -0.48 -6.07 7.06 -11.12 -0.08 -6.15 16 20 C 0.29 3.11 12.22 -92.70 -1.13 1.97 16 21 N -0.48 -5.63 10.49 -11.76 -0.12 -5.75 16 22 C 0.17 1.98 7.23 -83.24 -0.60 1.38 16 23 C -0.12 -1.08 10.38 -38.92 -0.40 -1.48 16 24 C -0.18 -1.39 11.03 28.81 0.32 -1.08 16 25 S 0.22 2.45 21.59 -107.50 -2.32 0.13 16 26 C -0.23 -3.07 6.35 -37.89 -0.24 -3.31 16 27 C 0.09 1.62 6.46 -2.41 -0.02 1.60 16 28 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 29 H 0.04 1.09 7.38 -51.93 -0.38 0.71 16 30 H 0.00 0.06 6.37 -51.93 -0.33 -0.27 16 31 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.08 1.24 6.47 -51.93 -0.34 0.91 16 34 H 0.07 0.97 7.44 -51.93 -0.39 0.58 16 35 H 0.07 0.93 7.56 -51.93 -0.39 0.54 16 36 H 0.21 1.35 8.06 -52.49 -0.42 0.92 16 37 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.18 0.71 8.06 -52.48 -0.42 0.29 16 39 H 0.07 1.49 6.96 -51.93 -0.36 1.13 16 40 H 0.08 1.58 8.03 -51.93 -0.42 1.16 16 LS Contribution 342.54 15.07 5.16 5.16 Total: -1.00 -31.40 342.54 -10.35 -41.74 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.64 Total: -1.96 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: -2.92 Total: 10.26 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -0.68 Total: -61.79 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.36 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.32 Total: 0.13 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.40 -10.35 -41.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971658139.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.425 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds