Wall clock time and date at job start Tue Mar 31 2020 16:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36936 * 119.99692 * 2 1 4 4 H 1.08000 * 119.99987 * 203.23884 * 3 2 1 5 5 C 1.38819 * 120.00003 * 23.24809 * 3 2 1 6 6 N 1.31620 * 119.99976 * 13.76210 * 5 3 2 7 7 Si 1.86797 * 119.99868 * 193.76584 * 5 3 2 8 8 H 1.48505 * 109.47138 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47332 * 119.99534 * 7 5 3 10 10 H 1.48508 * 109.47051 * 239.99987 * 7 5 3 11 11 C 1.46502 * 120.00253 * 179.97438 * 2 1 3 12 12 H 1.08995 * 110.88565 * 183.88378 * 11 2 1 13 13 C 1.55155 * 111.00240 * 60.00212 * 11 2 1 14 14 C 1.54323 * 102.94304 * 206.42554 * 13 11 2 15 15 N 1.47024 * 107.26968 * 22.19460 * 14 13 11 16 16 C 1.34774 * 125.64537 * 181.02683 * 15 14 13 17 17 O 1.21511 * 120.00193 * 180.02562 * 16 15 14 18 18 C 1.48211 * 120.00116 * 0.02562 * 16 15 14 19 19 N 1.32973 * 120.61610 * 0.02562 * 18 16 15 20 20 C 1.31772 * 120.90610 * 180.02562 * 19 18 16 21 21 N 1.31181 * 122.65156 * 0.02562 * 20 19 18 22 22 C 1.34527 * 121.10622 * 359.97438 * 21 20 19 23 23 C 1.44791 * 130.27746 * 180.02562 * 22 21 20 24 24 C 1.32199 * 114.91493 * 180.02562 * 23 22 21 25 25 S 1.75367 * 111.45149 * 359.97438 * 24 23 22 26 26 C 1.40457 * 120.61248 * 179.72332 * 18 16 15 27 27 C 1.47426 * 108.70423 * 1.28467 * 15 14 13 28 28 H 1.08996 * 109.47378 * 275.15718 * 1 2 3 29 29 H 1.08997 * 109.46987 * 35.15929 * 1 2 3 30 30 H 1.09005 * 109.46501 * 155.15468 * 1 2 3 31 31 H 0.97000 * 119.99996 * 180.02562 * 6 5 3 32 32 H 1.09000 * 110.71792 * 88.06170 * 13 11 2 33 33 H 1.09004 * 110.87595 * 324.86032 * 13 11 2 34 34 H 1.08998 * 109.88003 * 262.77839 * 14 13 11 35 35 H 1.08996 * 110.01505 * 141.68452 * 14 13 11 36 36 H 1.07997 * 118.67290 * 179.97438 * 20 19 18 37 37 H 1.08000 * 122.54220 * 359.97438 * 23 22 21 38 38 H 1.08004 * 124.27809 * 179.97438 * 24 23 22 39 39 H 1.09000 * 110.36254 * 94.48399 * 27 15 14 40 40 H 1.08996 * 110.36920 * 216.80196 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1639 1.2239 -0.3690 5 6 1.5400 2.3393 0.4745 6 7 0.4239 2.2565 1.1671 7 14 2.3038 4.0088 0.1300 8 1 3.5470 3.8304 -0.6625 9 1 1.3438 4.8439 -0.6357 10 1 2.6283 4.6794 1.4147 11 6 2.1976 -1.2687 0.0006 12 1 3.2718 -1.0971 0.0695 13 6 1.8485 -2.1130 -1.2535 14 6 2.1065 -3.5588 -0.7796 15 7 2.0265 -3.5578 0.6885 16 6 2.2132 -4.6281 1.4860 17 8 2.1219 -4.5105 2.6919 18 6 2.5299 -5.9485 0.8921 19 7 2.6332 -6.0911 -0.4259 20 6 2.9141 -7.2625 -0.9601 21 7 3.1053 -8.3415 -0.2391 22 6 3.0232 -8.3041 1.1032 23 6 3.1953 -9.3578 2.0812 24 6 3.0443 -8.9801 3.3391 25 16 2.6712 -7.2705 3.4551 26 6 2.7327 -7.0712 1.7114 27 6 1.7021 -2.1935 1.1433 28 1 -0.3634 0.0924 1.0234 29 1 -0.3633 0.8402 -0.5918 30 1 -0.3632 -0.9326 -0.4318 31 1 -0.0023 3.0624 1.4984 32 1 2.5045 -1.8570 -2.0855 33 1 0.8034 -1.9795 -1.5330 34 1 3.0982 -3.8814 -1.0966 35 1 1.3503 -4.2269 -1.1916 36 1 2.9890 -7.3373 -2.0348 37 1 3.4285 -10.3753 1.8041 38 1 3.1387 -9.6410 4.1882 39 1 0.6264 -2.0857 1.2822 40 1 2.2296 -1.9670 2.0698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971658139.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:16 Heat of formation + Delta-G solvation = 65.093943 kcal Electronic energy + Delta-G solvation = -25603.832640 eV Core-core repulsion = 21932.151508 eV Total energy + Delta-G solvation = -3671.681132 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.40602 -40.92551 -39.01403 -37.30638 -36.59793 -34.61763 -33.41037 -31.81239 -31.34899 -29.58616 -28.07318 -26.89153 -26.10737 -24.94268 -23.83369 -22.77029 -21.15302 -20.89226 -19.54692 -18.95796 -18.83660 -17.91603 -17.61493 -17.16507 -16.77021 -16.39912 -16.04951 -15.70193 -15.55624 -15.18026 -15.00480 -14.80482 -14.40066 -14.22833 -13.89046 -13.87721 -13.49820 -13.40064 -13.13644 -12.80992 -12.60744 -12.42930 -12.38060 -12.18561 -12.09608 -12.05539 -11.84773 -11.79665 -11.52666 -11.38669 -10.66205 -10.50640 -10.49283 -9.82902 -9.17017 -8.80143 -7.84067 -5.34421 -1.03102 -0.62387 0.21604 0.86452 0.89331 1.47127 1.48818 1.57019 1.57767 1.60245 2.49325 2.57679 2.59871 2.78189 3.09979 3.28074 3.40337 3.52972 3.76779 3.92387 4.00909 4.10129 4.20805 4.36384 4.43022 4.54658 4.68705 4.76748 4.80023 4.90889 4.95048 4.99837 5.08675 5.13242 5.21007 5.30827 5.42591 5.50829 5.65128 5.70431 6.26840 6.31134 6.64646 6.81357 7.12663 7.82612 8.27162 9.18602 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.025892 B = 0.002699 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.156063 B =10369.814669 C =11031.605679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.599 5.599 3 C -0.266 4.266 4 H 0.076 0.924 5 C -0.051 4.051 6 N -0.936 5.936 7 Si 0.970 3.030 8 H -0.264 1.264 9 H -0.291 1.291 10 H -0.295 1.295 11 C 0.167 3.833 12 H 0.076 0.924 13 C -0.142 4.142 14 C 0.127 3.873 15 N -0.585 5.585 16 C 0.564 3.436 17 O -0.555 6.555 18 C 0.180 3.820 19 N -0.482 5.482 20 C 0.294 3.706 21 N -0.485 5.485 22 C 0.162 3.838 23 C -0.130 4.130 24 C -0.150 4.150 25 S 0.172 5.828 26 C -0.250 4.250 27 C 0.098 3.902 28 H 0.002 0.998 29 H 0.018 0.982 30 H 0.035 0.965 31 H 0.248 0.752 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.248 0.752 37 H 0.189 0.811 38 H 0.223 0.777 39 H 0.059 0.941 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.541 -25.842 -2.447 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.320 5.320 3 C -0.396 4.396 4 H 0.093 0.907 5 C -0.246 4.246 6 N -0.583 5.583 7 Si 0.798 3.202 8 H -0.188 1.188 9 H -0.217 1.217 10 H -0.223 1.223 11 C 0.058 3.942 12 H 0.094 0.906 13 C -0.182 4.182 14 C 0.005 3.995 15 N -0.316 5.316 16 C 0.351 3.649 17 O -0.434 6.434 18 C 0.021 3.979 19 N -0.199 5.199 20 C 0.003 3.997 21 N -0.199 5.199 22 C 0.015 3.985 23 C -0.160 4.160 24 C -0.287 4.287 25 S 0.434 5.566 26 C -0.371 4.371 27 C -0.027 4.027 28 H 0.020 0.980 29 H 0.037 0.963 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.263 0.737 37 H 0.206 0.794 38 H 0.240 0.760 39 H 0.077 0.923 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.209 -24.852 -1.500 25.436 hybrid contribution 0.133 0.625 -0.086 0.645 sum 5.342 -24.226 -1.587 24.859 Atomic orbital electron populations 1.20518 0.82623 0.96171 0.97587 1.44040 1.02056 1.00787 1.85109 1.19605 0.98996 0.86268 1.34687 0.90657 1.25837 0.98681 1.02034 0.98098 1.70246 1.21447 1.27707 1.38852 0.85164 0.78100 0.79898 0.77009 1.18780 1.21739 1.22273 1.21650 0.95772 0.84535 0.92232 0.90612 1.23173 1.03048 0.93044 0.98902 1.22234 1.03612 0.96925 0.76753 1.48363 1.65646 1.07994 1.09617 1.17741 0.78574 0.83046 0.85576 1.90769 1.53651 1.84476 1.14483 1.20745 0.95208 0.91924 0.89983 1.68734 1.13171 1.28310 1.09728 1.25695 0.90134 0.81197 1.02631 1.68315 1.13833 1.32831 1.04925 1.21015 0.95048 0.91164 0.91299 1.20817 1.05621 1.00083 0.89445 1.26295 1.00816 0.99582 1.02049 1.85284 1.70947 1.03752 0.96571 1.24505 1.10679 0.99192 1.02758 1.22891 0.99978 0.80266 0.99572 0.97956 0.96281 0.94691 0.94233 0.88583 0.90868 0.89225 0.89552 0.73661 0.79427 0.75995 0.92256 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.50 7.56 127.77 0.97 9.47 16 2 N -0.60 -29.06 2.96 -694.58 -2.05 -31.11 16 3 C -0.27 -14.22 9.60 84.04 0.81 -13.41 16 4 H 0.08 3.88 7.87 -2.91 -0.02 3.86 16 5 C -0.05 -2.82 5.08 84.86 0.43 -2.39 16 6 N -0.94 -55.20 10.77 21.65 0.23 -54.97 16 7 Si 0.97 44.58 29.58 68.60 2.03 46.61 16 8 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 9 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 10 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 11 C 0.17 6.54 3.55 46.46 0.16 6.71 16 12 H 0.08 3.00 7.96 -2.39 -0.02 2.99 16 13 C -0.14 -4.23 6.49 31.78 0.21 -4.03 16 14 C 0.13 3.35 5.42 86.73 0.47 3.82 16 15 N -0.59 -19.51 3.32 -814.34 -2.71 -22.22 16 16 C 0.56 19.39 7.85 86.90 0.68 20.07 16 17 O -0.56 -21.96 15.46 -3.75 -0.06 -22.02 16 18 C 0.18 5.15 6.77 42.16 0.29 5.43 16 19 N -0.48 -11.27 7.06 -189.09 -1.33 -12.61 16 20 C 0.29 5.39 12.22 181.07 2.21 7.61 16 21 N -0.48 -10.04 10.49 -191.11 -2.00 -12.05 16 22 C 0.16 3.50 7.23 40.96 0.30 3.79 16 23 C -0.13 -1.84 10.38 22.92 0.24 -1.60 16 24 C -0.15 -1.81 11.03 66.80 0.74 -1.07 16 25 S 0.17 3.76 21.59 -56.49 -1.22 2.55 16 26 C -0.25 -6.44 6.35 23.37 0.15 -6.30 16 27 C 0.10 3.82 6.46 86.93 0.56 4.38 16 28 H 0.00 0.12 7.33 -2.39 -0.02 0.10 16 29 H 0.02 0.98 7.38 -2.39 -0.02 0.96 16 30 H 0.03 1.43 6.37 -2.38 -0.02 1.41 16 31 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.07 2.25 6.47 -2.38 -0.02 2.24 16 34 H 0.09 2.13 7.44 -2.39 -0.02 2.11 16 35 H 0.09 2.07 7.56 -2.39 -0.02 2.05 16 36 H 0.25 2.20 8.06 -2.91 -0.02 2.17 16 37 H 0.19 1.51 8.06 -2.91 -0.02 1.48 16 38 H 0.22 0.72 8.06 -2.91 -0.02 0.70 16 39 H 0.06 2.49 6.96 -2.39 -0.02 2.47 16 40 H 0.05 2.30 8.03 -2.39 -0.02 2.28 16 Total: -1.00 -71.04 342.54 2.17 -68.86 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: 1.08 Total: 4.47 kcal Atomic # 6 Polarization: 24.27 SS G_CDS: 8.21 Total: 32.48 kcal Atomic # 7 Polarization: -125.08 SS G_CDS: -7.87 Total: -132.95 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.06 Total: -22.02 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.22 Total: 2.55 kcal Total: -71.04 2.17 -68.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971658139.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.959 kcal (2) G-P(sol) polarization free energy of solvation -71.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds