Wall clock time and date at job start Tue Mar 31 2020 16:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36934 * 120.00389 * 2 1 4 4 H 1.07994 * 120.00502 * 153.16621 * 3 2 1 5 5 C 1.38810 * 119.99641 * 332.89754 * 3 2 1 6 6 N 1.31622 * 120.00020 * 350.49636 * 5 3 2 7 7 Si 1.86801 * 120.00085 * 170.49051 * 5 3 2 8 8 H 1.48501 * 109.47184 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.47295 * 119.99994 * 7 5 3 10 10 H 1.48504 * 109.47382 * 240.00171 * 7 5 3 11 11 C 1.46502 * 120.00036 * 180.02562 * 2 1 3 12 12 H 1.09006 * 110.64099 * 183.13807 * 11 2 1 13 13 C 1.55163 * 110.72097 * 60.00075 * 11 2 1 14 14 C 1.54911 * 101.58134 * 206.13546 * 13 11 2 15 15 N 1.47426 * 104.83136 * 37.00590 * 14 13 11 16 16 C 1.34778 * 125.64578 * 155.82422 * 15 14 13 17 17 O 1.21545 * 120.00191 * 355.14858 * 16 15 14 18 18 C 1.47816 * 119.99878 * 175.14019 * 16 15 14 19 19 N 1.28943 * 124.85540 * 185.72725 * 18 16 15 20 20 C 1.33212 * 118.16118 * 180.02562 * 19 18 16 21 21 C 1.41653 * 129.12195 * 179.97438 * 20 19 18 22 22 C 1.36500 * 118.88705 * 180.02562 * 21 20 19 23 23 C 1.38795 * 119.89002 * 359.97438 * 22 21 20 24 24 N 1.31385 * 120.96124 * 0.02562 * 23 22 21 25 25 C 1.33044 * 121.81886 * 359.97438 * 24 23 22 26 26 S 1.75854 * 124.85416 * 5.42622 * 18 16 15 27 27 C 1.47020 * 108.70504 * 335.87090 * 15 14 13 28 28 H 1.08999 * 109.47194 * 92.20407 * 1 2 3 29 29 H 1.09001 * 109.46721 * 212.20535 * 1 2 3 30 30 H 1.08996 * 109.46987 * 332.19907 * 1 2 3 31 31 H 0.97004 * 119.99813 * 180.02562 * 6 5 3 32 32 H 1.09000 * 110.99834 * 324.20860 * 13 11 2 33 33 H 1.08990 * 111.00516 * 88.01912 * 13 11 2 34 34 H 1.08995 * 110.36722 * 155.84352 * 14 13 11 35 35 H 1.08999 * 110.36671 * 278.05834 * 14 13 11 36 36 H 1.08009 * 120.56149 * 0.02562 * 21 20 19 37 37 H 1.07995 * 120.05652 * 180.02562 * 22 21 20 38 38 H 1.08005 * 119.51708 * 179.97438 * 23 22 21 39 39 H 1.08995 * 109.88363 * 241.64131 * 27 15 14 40 40 H 1.09006 * 109.88211 * 120.47867 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1425 1.2362 0.4222 5 6 1.5700 2.3220 -0.5477 6 7 0.4492 2.2248 -1.2310 7 14 2.3804 3.9889 -0.3149 8 1 3.6213 3.8286 0.4849 9 1 2.7179 4.5648 -1.6414 10 1 1.4465 4.8984 0.3964 11 6 2.1975 -1.2687 -0.0006 12 1 3.2717 -1.0923 0.0554 13 6 1.8436 -2.1064 -1.2578 14 6 2.1172 -3.5472 -0.7586 15 7 1.6778 -3.5488 0.6486 16 6 1.2934 -4.6335 1.3502 17 8 1.2060 -5.7137 0.7998 18 6 0.9781 -4.5095 2.7890 19 7 0.7047 -5.4974 3.5713 20 6 0.4391 -5.2323 4.8495 21 6 0.1133 -6.1264 5.8987 22 6 -0.1224 -5.6224 7.1452 23 6 -0.0400 -4.2545 7.3652 24 7 0.2626 -3.4298 6.3882 25 6 0.5025 -3.8632 5.1534 26 16 0.9298 -2.9943 3.6803 27 6 1.7274 -2.1712 1.1597 28 1 -0.3633 -0.0395 -1.0269 29 1 -0.3633 -0.8696 0.5477 30 1 -0.3633 0.9090 0.4793 31 1 0.0443 3.0187 -1.6140 32 1 0.7957 -1.9794 -1.5295 33 1 2.4953 -1.8514 -2.0933 34 1 1.5375 -4.2658 -1.3379 35 1 3.1807 -3.7765 -0.8260 36 1 0.0525 -7.1891 5.7157 37 1 -0.3719 -6.2870 7.9591 38 1 -0.2281 -3.8622 8.3537 39 1 2.4333 -2.1082 1.9878 40 1 0.7358 -1.8627 1.4909 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971690105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:40 Heat of formation + Delta-G solvation = 57.735986 kcal Electronic energy + Delta-G solvation = -25585.620805 eV Core-core repulsion = 21913.620608 eV Total energy + Delta-G solvation = -3672.000197 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.04805 -41.29630 -39.29917 -38.37707 -36.56252 -33.62231 -33.51967 -32.22562 -31.04529 -29.48980 -28.05167 -27.51506 -25.50318 -25.16513 -24.16023 -22.87808 -21.22535 -20.83656 -19.83557 -18.94941 -18.61589 -18.19356 -17.58805 -17.48059 -16.81255 -16.68510 -16.20552 -15.92922 -15.67626 -15.14387 -15.00497 -14.57462 -14.43942 -14.31869 -14.05273 -13.83776 -13.72012 -13.40496 -13.17240 -12.92513 -12.82725 -12.56959 -12.33168 -12.28217 -12.01782 -11.98786 -11.84237 -11.68898 -11.46538 -11.15324 -10.61633 -10.41794 -10.20487 -9.94048 -9.68612 -8.75270 -7.83554 -5.34407 -1.31459 -0.30222 -0.10848 0.32362 0.67899 1.32373 1.50160 1.53217 1.61931 1.72402 2.49439 2.53372 2.67264 3.14244 3.32297 3.34337 3.48832 3.61963 3.68356 3.84268 3.87810 4.19452 4.25686 4.27148 4.36566 4.44319 4.51062 4.72754 4.74142 4.87353 4.89901 4.94532 4.97829 5.21083 5.31562 5.36330 5.37923 5.67737 5.72477 5.97691 6.16185 6.36313 6.51996 6.65715 7.15728 7.83473 8.30004 9.21594 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.015130 B = 0.003411 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.135460 B = 8207.938367 C = 9680.433765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.597 5.597 3 C -0.264 4.264 4 H 0.078 0.922 5 C -0.045 4.045 6 N -0.935 5.935 7 Si 0.966 3.034 8 H -0.263 1.263 9 H -0.295 1.295 10 H -0.295 1.295 11 C 0.173 3.827 12 H 0.096 0.904 13 C -0.141 4.141 14 C 0.116 3.884 15 N -0.596 5.596 16 C 0.606 3.394 17 O -0.537 6.537 18 C 0.043 3.957 19 N -0.418 5.418 20 C -0.003 4.003 21 C -0.016 4.016 22 C -0.144 4.144 23 C 0.154 3.846 24 N -0.480 5.480 25 C -0.008 4.008 26 S 0.180 5.820 27 C 0.068 3.932 28 H 0.001 0.999 29 H 0.022 0.978 30 H 0.026 0.974 31 H 0.248 0.752 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.171 0.829 37 H 0.203 0.797 38 H 0.215 0.785 39 H 0.087 0.913 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.792 -14.951 16.032 21.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.318 5.318 3 C -0.394 4.394 4 H 0.096 0.904 5 C -0.240 4.240 6 N -0.581 5.581 7 Si 0.795 3.205 8 H -0.187 1.187 9 H -0.222 1.222 10 H -0.222 1.222 11 C 0.064 3.936 12 H 0.114 0.886 13 C -0.181 4.181 14 C -0.005 4.005 15 N -0.329 5.329 16 C 0.390 3.610 17 O -0.415 6.415 18 C -0.241 4.241 19 N -0.134 5.134 20 C -0.129 4.129 21 C -0.044 4.044 22 C -0.167 4.167 23 C -0.018 4.018 24 N -0.191 5.191 25 C -0.253 4.253 26 S 0.435 5.565 27 C -0.058 4.058 28 H 0.020 0.980 29 H 0.040 0.960 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.188 0.812 37 H 0.220 0.780 38 H 0.232 0.768 39 H 0.104 0.896 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.901 -13.967 15.197 20.660 hybrid contribution -0.303 -0.199 0.097 0.375 sum 0.598 -14.166 15.294 20.855 Atomic orbital electron populations 1.20497 0.83076 0.96417 0.96931 1.43981 1.01742 1.00848 1.85257 1.19591 1.01022 0.86969 1.31847 0.90388 1.25820 0.98512 1.02015 0.97693 1.70204 1.21381 1.28374 1.38094 0.85226 0.78212 0.80183 0.76921 1.18729 1.22175 1.22238 1.21431 0.96757 0.84522 0.90871 0.88631 1.23266 1.02350 0.92835 0.99664 1.22449 1.01207 0.98116 0.78776 1.48247 1.63598 1.06637 1.14409 1.16471 0.78020 0.83511 0.83032 1.90791 1.53733 1.27225 1.69705 1.26751 1.06729 0.91985 0.98601 1.65598 1.10379 1.34034 1.03377 1.20389 1.07825 0.93620 0.91077 1.21512 0.92265 1.00725 0.89901 1.22331 0.99333 0.97324 0.97679 1.24008 0.89106 0.90472 0.98211 1.67287 1.13456 1.40464 0.97879 1.25593 1.04930 0.94884 0.99930 1.85883 1.66464 1.06847 0.97263 1.22913 1.02803 0.80532 0.99516 0.98024 0.95996 0.95521 0.94283 0.92270 0.88799 0.89982 0.88448 0.81165 0.78033 0.76822 0.89557 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.18 7.89 127.77 1.01 9.19 16 2 N -0.60 -27.09 2.92 -696.15 -2.04 -29.13 16 3 C -0.26 -13.30 9.57 84.03 0.80 -12.49 16 4 H 0.08 3.74 7.84 -2.91 -0.02 3.72 16 5 C -0.04 -2.35 5.11 84.86 0.43 -1.92 16 6 N -0.93 -52.74 10.82 21.65 0.23 -52.51 16 7 Si 0.97 42.84 29.56 68.60 2.03 44.87 16 8 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 9 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 10 H -0.30 -13.30 7.11 99.48 0.71 -12.60 16 11 C 0.17 6.12 3.45 46.18 0.16 6.28 16 12 H 0.10 3.20 7.95 -2.38 -0.02 3.18 16 13 C -0.14 -4.45 6.66 31.99 0.21 -4.24 16 14 C 0.12 3.18 6.93 86.86 0.60 3.78 16 15 N -0.60 -18.47 3.33 -815.24 -2.71 -21.18 16 16 C 0.61 20.81 7.85 86.78 0.68 21.49 16 17 O -0.54 -21.18 17.28 -3.86 -0.07 -21.25 16 18 C 0.04 1.40 7.34 87.65 0.64 2.04 16 19 N -0.42 -13.52 10.46 -180.89 -1.89 -15.41 16 20 C 0.00 -0.07 6.95 40.30 0.28 0.21 16 21 C -0.02 -0.26 10.18 22.71 0.23 -0.03 16 22 C -0.14 -1.37 10.00 22.00 0.22 -1.15 16 23 C 0.15 2.02 11.18 84.89 0.95 2.97 16 24 N -0.48 -11.43 10.38 -190.60 -1.98 -13.41 16 25 C -0.01 -0.21 7.72 85.03 0.66 0.44 16 26 S 0.18 5.27 18.70 -56.49 -1.06 4.22 16 27 C 0.07 2.15 4.74 86.73 0.41 2.57 16 28 H 0.00 0.07 7.55 -2.39 -0.02 0.06 16 29 H 0.02 0.89 6.06 -2.39 -0.01 0.88 16 30 H 0.03 1.36 7.04 -2.39 -0.02 1.34 16 31 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 32 H 0.06 2.12 7.24 -2.39 -0.02 2.10 16 33 H 0.09 2.79 8.14 -2.39 -0.02 2.78 16 34 H 0.08 2.25 7.99 -2.39 -0.02 2.23 16 35 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 37 H 0.20 -0.12 8.06 -2.91 -0.02 -0.15 16 38 H 0.22 0.82 8.06 -2.91 -0.02 0.80 16 39 H 0.09 2.51 6.81 -2.39 -0.02 2.50 16 40 H 0.08 2.57 4.76 -2.38 -0.01 2.56 16 Total: -1.00 -71.74 342.37 0.90 -70.84 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 1.09 Total: 3.82 kcal Atomic # 6 Polarization: 21.85 SS G_CDS: 7.29 Total: 29.14 kcal Atomic # 7 Polarization: -123.25 SS G_CDS: -8.38 Total: -131.63 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.07 Total: -21.25 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: 5.27 SS G_CDS: -1.06 Total: 4.22 kcal Total: -71.74 0.90 -70.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971690105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.578 kcal (2) G-P(sol) polarization free energy of solvation -71.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds