Wall clock time and date at job start Tue Mar 31 2020 16:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34783 * 119.99930 * 2 1 4 4 O 1.21523 * 119.99936 * 174.38576 * 3 2 1 5 5 C 1.48090 * 119.99926 * 354.65504 * 3 2 1 6 6 N 1.32703 * 120.59482 * 353.35166 * 5 3 2 7 7 C 1.31713 * 121.24395 * 179.80244 * 6 5 3 8 8 N 1.31534 * 122.33761 * 0.46415 * 7 6 5 9 9 C 1.33235 * 121.08007 * 359.78278 * 8 7 6 10 10 S 1.75723 * 131.41033 * 180.02562 * 9 8 7 11 11 C 1.75353 * 92.20040 * 179.97438 * 10 9 8 12 12 C 1.32146 * 111.47791 * 0.02562 * 11 10 9 13 13 C 1.40613 * 119.05640 * 359.97438 * 9 8 7 14 14 C 1.46500 * 120.00298 * 179.97438 * 2 1 3 15 15 C 1.53781 * 113.61153 * 39.13767 * 14 2 1 16 16 C 1.53955 * 87.02022 * 220.04652 * 15 14 2 17 17 N 1.46497 * 113.74089 * 139.94167 * 16 15 14 18 18 C 1.36937 * 119.99892 * 107.40522 * 17 16 15 19 19 H 1.08008 * 119.99641 * 0.02562 * 18 17 16 20 20 C 1.38811 * 120.00118 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00328 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99986 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47035 * 60.00183 * 22 20 18 24 24 H 1.48500 * 109.46863 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47417 * 300.00340 * 22 20 18 26 26 C 1.53778 * 113.61384 * 301.53127 * 14 2 1 27 27 H 1.09003 * 109.46994 * 85.14960 * 1 2 3 28 28 H 1.09003 * 109.46907 * 205.15019 * 1 2 3 29 29 H 1.08996 * 109.47168 * 325.15178 * 1 2 3 30 30 H 1.07999 * 118.82930 * 180.22713 * 7 6 5 31 31 H 1.08001 * 124.26147 * 179.97438 * 11 10 9 32 32 H 1.08003 * 122.55885 * 180.02562 * 12 11 10 33 33 H 1.09005 * 112.84943 * 170.33102 * 14 2 1 34 34 H 1.09003 * 113.61474 * 334.56867 * 15 14 2 35 35 H 1.09006 * 113.61353 * 105.47330 * 15 14 2 36 36 H 1.09000 * 113.53810 * 270.81235 * 16 15 14 37 37 H 0.97001 * 120.00576 * 287.40459 * 17 16 15 38 38 H 0.96997 * 120.00588 * 180.02562 * 21 20 18 39 39 H 1.08992 * 113.61618 * 254.52442 * 26 14 2 40 40 H 1.09002 * 113.61468 * 25.43349 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3497 1.1698 0.1030 5 6 1.4032 2.4470 -0.1195 6 7 0.0979 2.4559 -0.3585 7 6 -0.5697 3.5864 -0.4633 8 7 0.0121 4.7604 -0.3477 9 6 1.3196 4.8598 -0.1121 10 16 2.3613 6.2607 0.0888 11 6 3.7779 5.2567 0.3339 12 6 3.4776 3.9716 0.2669 13 6 2.0821 3.6851 0.0142 14 6 2.1975 -1.2687 0.0006 15 6 1.5591 -2.3490 -0.8883 16 6 1.9075 -3.3556 0.2232 17 7 0.8614 -4.3522 0.4655 18 6 1.0451 -5.6488 0.0653 19 1 1.9615 -5.9368 -0.4287 20 6 0.0542 -6.5932 0.2953 21 7 -1.0622 -6.2425 0.8977 22 14 0.3046 -8.3619 -0.2513 23 1 1.5006 -8.9246 0.4256 24 1 -0.8913 -9.1653 0.1089 25 1 0.5038 -8.4019 -1.7223 26 6 1.8674 -2.1701 1.2020 27 1 -0.3633 0.0869 -1.0240 28 1 -0.3633 -0.9303 0.4368 29 1 -0.3633 0.8433 0.5872 30 1 -1.6319 3.5481 -0.6547 31 1 4.7709 5.6404 0.5158 32 1 4.2171 3.1946 0.3927 33 1 3.2667 -1.1402 -0.1682 34 1 0.4874 -2.2155 -1.0363 35 1 2.0977 -2.5223 -1.8200 36 1 2.8974 -3.7988 0.1145 37 1 0.0386 -4.0937 0.9095 38 1 -1.7545 -6.9025 1.0588 39 1 2.6545 -2.1991 1.9553 40 1 0.8802 -1.9876 1.6265 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998798187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:26 Heat of formation + Delta-G solvation = 94.129599 kcal Electronic energy + Delta-G solvation = -25230.551268 eV Core-core repulsion = 21560.129217 eV Total energy + Delta-G solvation = -3670.422051 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.69171 -39.92941 -38.06494 -36.63753 -34.98355 -34.03049 -32.93180 -30.64593 -29.96104 -27.02430 -26.31128 -25.31545 -25.14108 -24.25650 -22.64658 -21.62565 -20.50749 -18.93665 -18.82382 -18.18302 -17.12184 -16.65506 -16.32251 -16.06958 -15.88091 -15.31842 -14.96191 -14.60148 -14.53100 -14.41655 -13.92450 -13.23306 -13.14095 -13.00488 -12.82865 -12.77276 -12.34940 -12.11615 -11.81270 -11.49148 -11.44170 -11.28311 -11.19767 -10.90105 -10.66326 -10.55213 -10.36596 -10.24398 -9.99879 -9.66732 -9.51624 -9.37605 -8.91807 -8.63164 -8.50098 -7.01656 -5.82092 -3.11205 -0.26257 0.20436 0.65510 1.37544 1.75906 2.47580 2.73641 3.38124 3.41786 3.46478 3.47178 3.55217 3.76629 4.00443 4.07660 4.56290 4.59242 4.69259 5.06693 5.12432 5.18000 5.32918 5.35990 5.43142 5.55664 5.59741 5.75270 5.79756 5.83110 5.92603 6.07658 6.10706 6.21348 6.26474 6.31816 6.40578 6.52867 6.72331 6.97710 7.33694 7.45935 7.66217 7.93504 8.36195 9.47589 10.03830 10.38452 11.40110 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.033123 B = 0.002264 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.118751 B =12367.014002 C =12991.562567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.568 5.568 3 C 0.562 3.438 4 O -0.529 6.529 5 C 0.194 3.806 6 N -0.484 5.484 7 C 0.304 3.696 8 N -0.477 5.477 9 C 0.084 3.916 10 S 0.164 5.836 11 C -0.197 4.197 12 C -0.089 4.089 13 C -0.135 4.135 14 C 0.112 3.888 15 C -0.174 4.174 16 C 0.170 3.830 17 N -0.709 5.709 18 C -0.246 4.246 19 H 0.072 0.928 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.161 4.161 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.212 0.788 31 H 0.182 0.818 32 H 0.172 0.828 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.385 0.615 38 H 0.257 0.743 39 H 0.066 0.934 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.426 25.928 -1.460 26.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.297 5.297 3 C 0.346 3.654 4 O -0.405 6.405 5 C 0.038 3.962 6 N -0.202 5.202 7 C 0.012 3.988 8 N -0.193 5.193 9 C -0.170 4.170 10 S 0.422 5.578 11 C -0.331 4.331 12 C -0.119 4.119 13 C -0.150 4.150 14 C 0.010 3.990 15 C -0.216 4.216 16 C 0.057 3.943 17 N -0.346 5.346 18 C -0.377 4.377 19 H 0.090 0.910 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.201 4.201 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.228 0.772 31 H 0.199 0.801 32 H 0.189 0.811 33 H 0.134 0.866 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.219 0.781 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.924 27.248 -1.652 27.738 hybrid contribution 0.572 -2.248 -0.057 2.320 sum 5.496 25.000 -1.709 25.654 Atomic orbital electron populations 1.22164 0.77816 1.03212 1.02945 1.47829 1.08150 1.05121 1.68635 1.17700 0.86535 0.82619 0.78511 1.90734 1.12897 1.86370 1.50493 1.21750 0.89614 0.93003 0.91864 1.68798 1.07033 1.31221 1.13171 1.25126 1.01119 0.81407 0.91100 1.67900 1.08284 1.29839 1.13260 1.24100 0.94687 0.97682 1.00490 1.84332 0.95873 1.03647 1.73953 1.25501 1.03052 0.96640 1.07860 1.21079 0.94101 0.97198 0.99493 1.20616 0.95716 0.93864 1.04780 1.22788 0.97229 0.79794 0.99226 1.24387 1.01337 0.96354 0.99476 1.21360 0.93821 0.87235 0.91837 1.42341 1.17169 1.05546 1.69584 1.19261 1.01267 0.85497 1.31647 0.91037 1.24765 0.96516 0.98315 1.01183 1.69640 1.07287 1.33835 1.47249 0.86256 0.76850 0.84690 0.78310 1.21200 1.21687 1.21200 1.23935 1.02012 0.96982 0.97217 0.91837 0.90724 0.89460 0.77222 0.80127 0.81112 0.86633 0.89631 0.91990 0.90191 0.78062 0.93365 0.91560 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 7.84 59.84 0.47 1.47 16 2 N -0.57 -7.97 3.08 -174.02 -0.54 -8.51 16 3 C 0.56 8.08 7.66 -12.21 -0.09 7.99 16 4 O -0.53 -8.40 14.11 5.35 0.08 -8.33 16 5 C 0.19 2.48 6.64 -82.07 -0.54 1.94 16 6 N -0.48 -5.45 6.34 -10.79 -0.07 -5.52 16 7 C 0.30 2.91 12.25 -92.45 -1.13 1.77 16 8 N -0.48 -5.24 10.45 -13.28 -0.14 -5.38 16 9 C 0.08 0.94 7.70 -16.05 -0.12 0.81 16 10 S 0.16 1.32 23.23 -107.50 -2.50 -1.18 16 11 C -0.20 -1.47 11.03 28.81 0.32 -1.15 16 12 C -0.09 -0.90 9.63 -38.96 -0.38 -1.28 16 13 C -0.13 -1.60 6.02 -105.08 -0.63 -2.24 16 14 C 0.11 1.69 4.19 -67.12 -0.28 1.41 16 15 C -0.17 -2.88 7.32 -25.83 -0.19 -3.07 16 16 C 0.17 3.24 4.48 -67.03 -0.30 2.94 16 17 N -0.71 -17.12 5.41 -52.55 -0.28 -17.40 16 18 C -0.25 -6.64 9.97 -15.06 -0.15 -6.79 16 19 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 22 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 C -0.16 -2.61 7.35 -25.92 -0.19 -2.80 16 27 H 0.06 0.76 8.04 -51.93 -0.42 0.34 16 28 H 0.07 0.97 6.15 -51.93 -0.32 0.66 16 29 H 0.09 1.00 5.75 -51.93 -0.30 0.70 16 30 H 0.21 1.18 8.06 -52.49 -0.42 0.75 16 31 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.17 1.81 6.50 -52.48 -0.34 1.47 16 33 H 0.12 1.76 7.25 -51.93 -0.38 1.38 16 34 H 0.09 1.48 6.70 -51.93 -0.35 1.13 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 37 H 0.39 9.84 7.92 -40.82 -0.32 9.51 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.08 1.37 6.86 -51.93 -0.36 1.01 16 LS Contribution 345.95 15.07 5.21 5.21 Total: -1.00 -31.52 345.95 -10.30 -41.81 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -4.44 Total: 8.52 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -3.32 Total: 0.58 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: -0.30 Total: -63.59 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.08 Total: -8.33 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.50 Total: -1.18 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.52 -10.30 -41.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998798187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.944 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds