Wall clock time and date at job start Tue Mar 31 2020 16:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34783 * 119.99930 * 2 1 4 4 O 1.21523 * 119.99936 * 174.38576 * 3 2 1 5 5 C 1.48090 * 119.99926 * 354.65504 * 3 2 1 6 6 N 1.32703 * 120.59482 * 353.35166 * 5 3 2 7 7 C 1.31713 * 121.24395 * 179.80244 * 6 5 3 8 8 N 1.31534 * 122.33761 * 0.46415 * 7 6 5 9 9 C 1.33235 * 121.08007 * 359.78278 * 8 7 6 10 10 S 1.75723 * 131.41033 * 180.02562 * 9 8 7 11 11 C 1.75353 * 92.20040 * 179.97438 * 10 9 8 12 12 C 1.32146 * 111.47791 * 0.02562 * 11 10 9 13 13 C 1.40613 * 119.05640 * 359.97438 * 9 8 7 14 14 C 1.46500 * 120.00298 * 179.97438 * 2 1 3 15 15 C 1.53781 * 113.61153 * 39.13767 * 14 2 1 16 16 C 1.53955 * 87.02022 * 220.04652 * 15 14 2 17 17 N 1.46497 * 113.74089 * 139.94167 * 16 15 14 18 18 C 1.36937 * 119.99892 * 107.40522 * 17 16 15 19 19 H 1.08008 * 119.99641 * 0.02562 * 18 17 16 20 20 C 1.38811 * 120.00118 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00328 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99986 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47035 * 60.00183 * 22 20 18 24 24 H 1.48500 * 109.46863 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47417 * 300.00340 * 22 20 18 26 26 C 1.53778 * 113.61384 * 301.53127 * 14 2 1 27 27 H 1.09003 * 109.46994 * 85.14960 * 1 2 3 28 28 H 1.09003 * 109.46907 * 205.15019 * 1 2 3 29 29 H 1.08996 * 109.47168 * 325.15178 * 1 2 3 30 30 H 1.07999 * 118.82930 * 180.22713 * 7 6 5 31 31 H 1.08001 * 124.26147 * 179.97438 * 11 10 9 32 32 H 1.08003 * 122.55885 * 180.02562 * 12 11 10 33 33 H 1.09005 * 112.84943 * 170.33102 * 14 2 1 34 34 H 1.09003 * 113.61474 * 334.56867 * 15 14 2 35 35 H 1.09006 * 113.61353 * 105.47330 * 15 14 2 36 36 H 1.09000 * 113.53810 * 270.81235 * 16 15 14 37 37 H 0.97001 * 120.00576 * 287.40459 * 17 16 15 38 38 H 0.96997 * 120.00588 * 180.02562 * 21 20 18 39 39 H 1.08992 * 113.61618 * 254.52442 * 26 14 2 40 40 H 1.09002 * 113.61468 * 25.43349 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3497 1.1698 0.1030 5 6 1.4032 2.4470 -0.1195 6 7 0.0979 2.4559 -0.3585 7 6 -0.5697 3.5864 -0.4633 8 7 0.0121 4.7604 -0.3477 9 6 1.3196 4.8598 -0.1121 10 16 2.3613 6.2607 0.0888 11 6 3.7779 5.2567 0.3339 12 6 3.4776 3.9716 0.2669 13 6 2.0821 3.6851 0.0142 14 6 2.1975 -1.2687 0.0006 15 6 1.5591 -2.3490 -0.8883 16 6 1.9075 -3.3556 0.2232 17 7 0.8614 -4.3522 0.4655 18 6 1.0451 -5.6488 0.0653 19 1 1.9615 -5.9368 -0.4287 20 6 0.0542 -6.5932 0.2953 21 7 -1.0622 -6.2425 0.8977 22 14 0.3046 -8.3619 -0.2513 23 1 1.5006 -8.9246 0.4256 24 1 -0.8913 -9.1653 0.1089 25 1 0.5038 -8.4019 -1.7223 26 6 1.8674 -2.1701 1.2020 27 1 -0.3633 0.0869 -1.0240 28 1 -0.3633 -0.9303 0.4368 29 1 -0.3633 0.8433 0.5872 30 1 -1.6319 3.5481 -0.6547 31 1 4.7709 5.6404 0.5158 32 1 4.2171 3.1946 0.3927 33 1 3.2667 -1.1402 -0.1682 34 1 0.4874 -2.2155 -1.0363 35 1 2.0977 -2.5223 -1.8200 36 1 2.8974 -3.7988 0.1145 37 1 0.0386 -4.0937 0.9095 38 1 -1.7545 -6.9025 1.0588 39 1 2.6545 -2.1991 1.9553 40 1 0.8802 -1.9876 1.6265 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998798187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:25 Heat of formation + Delta-G solvation = 75.429212 kcal Electronic energy + Delta-G solvation = -25231.362178 eV Core-core repulsion = 21560.129217 eV Total energy + Delta-G solvation = -3671.232961 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.54303 -41.08426 -39.36035 -37.41814 -36.22994 -35.29812 -34.38623 -31.93058 -31.34222 -28.09439 -27.38967 -26.58022 -26.20473 -25.79305 -24.00996 -22.35461 -21.70304 -20.32930 -19.65445 -19.19466 -19.03757 -17.81697 -17.13421 -17.02891 -16.87308 -16.47641 -16.04245 -15.99295 -15.85564 -15.30738 -15.12382 -14.93293 -14.32829 -14.16198 -13.92224 -13.63500 -13.47945 -13.29578 -13.15891 -13.12343 -12.74670 -12.30682 -12.28068 -12.20891 -12.15926 -12.04677 -11.96909 -11.69330 -11.49055 -11.33994 -10.85831 -10.30589 -10.25294 -9.68041 -9.28824 -8.98320 -7.93338 -5.21637 -1.08724 -0.60732 -0.03700 0.69712 1.04045 1.46327 1.49493 1.51782 1.57642 1.67818 2.51727 2.57890 2.67116 3.01353 3.19276 3.34877 3.37992 3.65506 3.77627 3.80566 3.93852 4.04271 4.18317 4.27895 4.37206 4.57546 4.68757 4.75492 4.85770 4.87018 4.88766 4.91750 5.01040 5.04783 5.13676 5.20230 5.38738 5.43159 5.52478 5.62476 6.20663 6.28549 6.63312 6.84966 7.35251 8.10294 8.33966 9.29527 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.033123 B = 0.002264 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.118751 B =12367.014002 C =12991.562567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.571 5.571 3 C 0.561 3.439 4 O -0.548 6.548 5 C 0.173 3.827 6 N -0.488 5.488 7 C 0.300 3.700 8 N -0.484 5.484 9 C 0.060 3.940 10 S 0.207 5.793 11 C -0.170 4.170 12 C -0.120 4.120 13 C -0.146 4.146 14 C 0.129 3.871 15 C -0.161 4.161 16 C 0.155 3.845 17 N -0.722 5.722 18 C -0.244 4.244 19 H 0.078 0.922 20 C -0.074 4.074 21 N -0.968 5.968 22 Si 0.971 3.029 23 H -0.279 1.279 24 H -0.297 1.297 25 H -0.278 1.278 26 C -0.149 4.149 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.247 0.753 31 H 0.218 0.782 32 H 0.162 0.838 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.375 0.625 38 H 0.251 0.749 39 H 0.074 0.926 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.291 27.911 -1.902 28.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.300 5.300 3 C 0.347 3.653 4 O -0.426 6.426 5 C 0.017 3.983 6 N -0.206 5.206 7 C 0.009 3.991 8 N -0.200 5.200 9 C -0.194 4.194 10 S 0.465 5.535 11 C -0.304 4.304 12 C -0.149 4.149 13 C -0.162 4.162 14 C 0.025 3.975 15 C -0.203 4.203 16 C 0.044 3.956 17 N -0.360 5.360 18 C -0.376 4.376 19 H 0.095 0.905 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.800 3.200 23 H -0.205 1.205 24 H -0.223 1.223 25 H -0.205 1.205 26 C -0.189 4.189 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.263 0.737 31 H 0.234 0.766 32 H 0.179 0.821 33 H 0.136 0.864 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.207 0.793 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.825 29.270 -2.114 29.919 hybrid contribution 0.388 -2.658 0.078 2.687 sum 6.213 26.613 -2.036 27.404 Atomic orbital electron populations 1.22192 0.76839 1.03129 1.03390 1.47825 1.08693 1.04710 1.68817 1.17957 0.86439 0.83157 0.77790 1.90712 1.13779 1.86817 1.51272 1.21511 0.90381 0.92501 0.93873 1.68747 1.06491 1.32159 1.13163 1.25837 1.02357 0.80633 0.90229 1.67986 1.08352 1.30375 1.13320 1.24570 0.95031 0.98876 1.00899 1.84235 0.94755 1.01885 1.72612 1.25957 1.04477 0.95619 1.04317 1.21029 0.93373 0.98162 1.02377 1.20829 0.96695 0.93840 1.04838 1.22491 0.97277 0.80097 0.97589 1.24150 1.01170 0.95871 0.99086 1.21651 0.92625 0.87223 0.94087 1.42485 1.17946 1.05705 1.69819 1.19659 1.01033 0.86752 1.30183 0.90459 1.25536 0.96629 1.02149 1.02340 1.69791 1.08130 1.34660 1.49277 0.85250 0.76480 0.80167 0.78088 1.20478 1.22343 1.20462 1.23776 1.02189 0.95631 0.97340 0.91322 0.91654 0.88405 0.73748 0.76569 0.82083 0.86391 0.90250 0.91424 0.90030 0.79266 0.94028 0.90769 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.10 7.84 127.77 1.00 3.10 16 2 N -0.57 -15.80 3.08 -822.77 -2.54 -18.33 16 3 C 0.56 16.03 7.66 86.86 0.67 16.70 16 4 O -0.55 -17.44 14.11 -3.79 -0.05 -17.49 16 5 C 0.17 4.36 6.64 42.52 0.28 4.65 16 6 N -0.49 -10.54 6.34 -188.06 -1.19 -11.73 16 7 C 0.30 5.30 12.25 180.99 2.22 7.51 16 8 N -0.48 -9.93 10.45 -195.92 -2.05 -11.97 16 9 C 0.06 1.25 7.70 85.06 0.66 1.91 16 10 S 0.21 2.82 23.23 -56.49 -1.31 1.50 16 11 C -0.17 -2.09 11.03 66.83 0.74 -1.35 16 12 C -0.12 -2.31 9.63 22.92 0.22 -2.09 16 13 C -0.15 -3.39 6.02 -20.16 -0.12 -3.51 16 14 C 0.13 3.81 4.19 45.52 0.19 4.00 16 15 C -0.16 -5.29 7.32 31.18 0.23 -5.06 16 16 C 0.15 5.86 4.48 45.58 0.20 6.06 16 17 N -0.72 -35.25 5.41 -320.16 -1.73 -36.98 16 18 C -0.24 -13.26 9.97 84.03 0.84 -12.42 16 19 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 20 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 21 N -0.97 -58.20 13.06 21.65 0.28 -57.92 16 22 Si 0.97 45.51 29.55 68.60 2.03 47.54 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 26 C -0.15 -4.79 7.35 31.12 0.23 -4.56 16 27 H 0.07 1.59 8.04 -2.39 -0.02 1.57 16 28 H 0.06 1.71 6.15 -2.39 -0.01 1.69 16 29 H 0.10 2.17 5.75 -2.39 -0.01 2.16 16 30 H 0.25 2.18 8.06 -2.91 -0.02 2.15 16 31 H 0.22 0.96 8.06 -2.91 -0.02 0.94 16 32 H 0.16 3.40 6.50 -2.91 -0.02 3.38 16 33 H 0.12 3.49 7.25 -2.38 -0.02 3.48 16 34 H 0.08 2.73 6.70 -2.39 -0.02 2.71 16 35 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.08 3.05 8.10 -2.39 -0.02 3.03 16 37 H 0.37 19.59 7.92 -92.71 -0.73 18.86 16 38 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.08 2.64 6.86 -2.39 -0.02 2.63 16 Total: -1.00 -68.10 345.95 1.62 -66.48 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.37 Total: 27.72 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 7.81 Total: 11.19 kcal Atomic # 7 Polarization: -129.72 SS G_CDS: -7.23 Total: -136.94 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.05 Total: -17.49 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -1.31 Total: 1.50 kcal Total: -68.10 1.62 -66.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998798187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.907 kcal (2) G-P(sol) polarization free energy of solvation -68.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds