Wall clock time and date at job start Tue Mar 31 2020 16:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34775 * 120.00011 * 2 1 4 4 O 1.21612 * 119.99826 * 185.13313 * 3 2 1 5 5 C 1.47382 * 119.99801 * 5.12741 * 3 2 1 6 6 C 1.47018 * 127.18923 * 36.69506 * 5 3 2 7 7 C 1.34178 * 105.95277 * 179.97438 * 6 5 3 8 8 O 1.34220 * 109.12653 * 359.97438 * 7 6 5 9 9 C 1.33658 * 110.90129 * 359.76493 * 8 7 6 10 10 C 1.50700 * 125.79826 * 180.26809 * 9 8 7 11 11 F 1.39895 * 109.47332 * 270.13997 * 10 9 8 12 12 F 1.39904 * 109.47180 * 30.14046 * 10 9 8 13 13 F 1.39906 * 109.47247 * 150.13572 * 10 9 8 14 14 C 1.46502 * 119.99624 * 179.97438 * 2 1 3 15 15 C 1.53780 * 113.69297 * 17.47367 * 14 2 1 16 16 C 1.53782 * 87.08150 * 89.12527 * 15 14 2 17 17 N 1.46501 * 113.61615 * 270.88150 * 16 15 14 18 18 C 1.36938 * 120.00259 * 257.41038 * 17 16 15 19 19 H 1.07998 * 119.99629 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99833 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00227 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99928 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47304 * 60.00243 * 22 20 18 24 24 H 1.48497 * 109.47606 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47162 * 300.00721 * 22 20 18 26 26 C 1.53786 * 87.08317 * 25.43158 * 16 15 14 27 27 H 1.08995 * 109.47026 * 265.11119 * 1 2 3 28 28 H 1.08995 * 109.46745 * 25.11211 * 1 2 3 29 29 H 1.09007 * 109.46951 * 145.11123 * 1 2 3 30 30 H 1.07997 * 127.03115 * 359.97438 * 6 5 3 31 31 H 1.07999 * 125.44297 * 179.97438 * 7 6 5 32 32 H 1.09001 * 112.85185 * 246.19993 * 14 2 1 33 33 H 1.09000 * 113.61393 * 203.67252 * 15 14 2 34 34 H 1.08996 * 113.61483 * 334.58008 * 15 14 2 35 35 H 1.09000 * 113.69334 * 139.99387 * 16 15 14 36 36 H 0.97009 * 119.99553 * 77.40732 * 17 16 15 37 37 H 0.97002 * 120.00044 * 179.97438 * 21 20 18 38 38 H 1.09003 * 113.61316 * 220.02124 * 26 16 15 39 39 H 1.08999 * 113.61316 * 89.11341 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3514 1.1693 -0.0942 5 6 1.4064 2.4410 0.1141 6 6 0.2073 2.7072 0.9219 7 6 -0.0997 3.9965 0.7124 8 8 0.7929 4.5287 -0.1370 9 6 1.7032 3.6209 -0.5026 10 6 2.8591 3.8596 -1.4397 11 9 2.4587 3.5890 -2.7525 12 9 3.2701 5.1934 -1.3431 13 9 3.9217 3.0180 -1.0934 14 6 2.1975 -1.2688 0.0006 15 6 1.3432 -2.4757 -0.4217 16 6 1.7675 -2.1703 -1.8679 17 7 0.8754 -1.2337 -2.5559 18 6 -0.0365 -1.6992 -3.4653 19 1 -0.0983 -2.7568 -3.6750 20 6 -0.8820 -0.8117 -4.1168 21 7 -0.8069 0.4771 -3.8608 22 14 -2.1254 -1.4466 -5.3578 23 1 -3.0497 -2.3982 -4.6901 24 1 -2.9013 -0.3066 -5.9089 25 1 -1.4136 -2.1399 -6.4614 26 6 3.0214 -1.5049 -1.2763 27 1 -0.3633 -0.0876 1.0239 28 1 -0.3632 0.9305 -0.4361 29 1 -0.3633 -0.8430 -0.5879 30 1 -0.3191 2.0080 1.5546 31 1 -0.9321 4.5222 1.1565 32 1 2.7602 -1.4323 0.9197 33 1 1.7187 -3.4284 -0.0485 34 1 0.2767 -2.3401 -0.2418 35 1 1.9830 -3.0607 -2.4585 36 1 0.9308 -0.2837 -2.3672 37 1 -1.3976 1.0973 -4.3163 38 1 3.3097 -0.5857 -1.7862 39 1 3.8557 -2.1924 -1.1367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998828134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:31 Heat of formation + Delta-G solvation = -121.272218 kcal Electronic energy + Delta-G solvation = -30727.828464 eV Core-core repulsion = 26031.163527 eV Total energy + Delta-G solvation = -4696.664937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.36058 -48.90724 -48.82172 -43.84942 -41.47292 -39.15841 -35.85996 -35.14024 -33.86330 -32.13803 -31.83410 -28.26519 -27.49890 -26.58222 -25.80818 -25.19208 -23.53243 -22.58634 -21.18468 -19.96987 -19.79490 -19.49180 -19.38344 -19.01234 -18.03166 -17.47302 -17.35237 -16.68294 -16.65990 -16.45820 -15.80070 -15.73586 -15.51511 -15.46348 -15.24199 -14.97598 -14.96044 -14.92357 -14.78044 -14.29321 -14.03371 -13.77167 -13.59306 -13.34711 -13.21248 -13.00115 -12.71980 -12.62254 -12.49225 -12.18567 -11.70466 -11.64403 -11.27476 -11.04753 -10.87569 -10.73772 -10.16882 -9.52686 -8.94384 -7.88971 -5.17832 -0.19730 0.75915 0.99727 1.49146 1.51442 1.56922 1.67831 1.84489 2.11026 2.54907 2.58112 3.07735 3.12197 3.32021 3.41625 3.60433 3.71062 3.80644 3.95929 4.11193 4.24266 4.32627 4.36443 4.41577 4.62945 4.69559 4.86695 4.92359 4.99117 5.09470 5.15210 5.17280 5.36664 5.44548 5.54412 5.62340 5.75188 6.31446 6.32686 7.03781 7.38380 8.14107 8.39184 9.32379 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.011447 B = 0.005329 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.451945 B = 5252.556301 C = 6069.050296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.572 5.572 3 C 0.564 3.436 4 O -0.551 6.551 5 C -0.157 4.157 6 C -0.196 4.196 7 C 0.025 3.975 8 O -0.155 6.155 9 C -0.082 4.082 10 C 0.548 3.452 11 F -0.175 7.175 12 F -0.166 7.166 13 F -0.141 7.141 14 C 0.127 3.873 15 C -0.156 4.156 16 C 0.142 3.858 17 N -0.717 5.717 18 C -0.242 4.242 19 H 0.076 0.924 20 C -0.065 4.065 21 N -0.959 5.959 22 Si 0.967 3.033 23 H -0.274 1.274 24 H -0.300 1.300 25 H -0.287 1.287 26 C -0.157 4.157 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.197 0.803 31 H 0.277 0.723 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.376 0.624 37 H 0.248 0.752 38 H 0.035 0.965 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.591 4.141 14.249 14.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.303 5.303 3 C 0.352 3.648 4 O -0.431 6.431 5 C -0.162 4.162 6 C -0.214 4.214 7 C -0.041 4.041 8 O -0.051 6.051 9 C -0.135 4.135 10 C 0.493 3.507 11 F -0.156 7.156 12 F -0.147 7.147 13 F -0.122 7.122 14 C 0.025 3.975 15 C -0.196 4.196 16 C 0.032 3.968 17 N -0.356 5.356 18 C -0.374 4.374 19 H 0.094 0.906 20 C -0.258 4.258 21 N -0.608 5.608 22 Si 0.797 3.203 23 H -0.200 1.200 24 H -0.226 1.226 25 H -0.214 1.214 26 C -0.196 4.196 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.214 0.786 31 H 0.292 0.708 32 H 0.113 0.887 33 H 0.137 0.863 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.209 0.791 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.139 4.297 13.933 14.625 hybrid contribution -0.379 0.198 -1.237 1.309 sum 0.759 4.495 12.696 13.490 Atomic orbital electron populations 1.22174 0.77776 1.04456 1.02342 1.47338 1.07886 1.04437 1.70609 1.17576 0.86501 0.83438 0.77256 1.90819 1.14177 1.87382 1.50674 1.21557 0.99626 0.92949 1.02059 1.23357 0.95677 0.98237 1.04157 1.25334 0.93786 0.93966 0.91011 1.83742 1.32080 1.37855 1.51378 1.21789 0.96236 0.90200 1.05260 1.16973 0.81098 0.74693 0.77942 1.93300 1.90703 1.93629 1.37953 1.93220 1.91286 1.34245 1.95972 1.93426 1.56696 1.70434 1.91662 1.21933 0.94472 0.83212 0.97918 1.24031 1.00362 0.96889 0.98328 1.21500 0.90098 0.92931 0.92287 1.42415 1.40149 1.05757 1.47288 1.19559 1.10095 0.92874 1.14853 0.90617 1.25421 1.02301 0.95581 1.02538 1.69818 1.42226 1.01768 1.47031 0.85324 0.79178 0.76535 0.79303 1.20016 1.22641 1.21379 1.23708 0.98266 1.00555 0.97112 0.89758 0.91745 0.90087 0.78567 0.70789 0.88726 0.86259 0.90629 0.92029 0.79089 0.94269 0.94613 0.86840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.35 7.47 127.77 0.95 3.30 16 2 N -0.57 -19.61 2.14 -823.54 -1.76 -21.38 16 3 C 0.56 21.40 7.22 86.65 0.63 22.02 16 4 O -0.55 -23.60 12.54 -4.07 -0.05 -23.65 16 5 C -0.16 -5.21 5.28 -18.99 -0.10 -5.31 16 6 C -0.20 -4.37 8.91 23.65 0.21 -4.16 16 7 C 0.03 0.46 12.03 66.89 0.80 1.26 16 8 O -0.16 -4.20 10.51 4.36 0.05 -4.16 16 9 C -0.08 -2.77 6.70 25.26 0.17 -2.60 16 10 C 0.55 19.97 3.49 71.24 0.25 20.22 16 11 F -0.17 -7.16 17.30 44.97 0.78 -6.38 16 12 F -0.17 -5.34 17.29 44.97 0.78 -4.56 16 13 F -0.14 -5.62 13.56 44.97 0.61 -5.01 16 14 C 0.13 4.05 4.15 45.52 0.19 4.24 16 15 C -0.16 -4.61 7.16 31.12 0.22 -4.39 16 16 C 0.14 5.47 4.55 45.52 0.21 5.68 16 17 N -0.72 -34.93 3.77 -320.44 -1.21 -36.14 16 18 C -0.24 -12.87 9.98 84.03 0.84 -12.03 16 19 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 20 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 21 N -0.96 -56.32 13.06 21.65 0.28 -56.04 16 22 Si 0.97 44.88 29.55 68.60 2.03 46.90 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 25 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 26 C -0.16 -5.61 7.12 31.12 0.22 -5.39 16 27 H 0.08 1.91 7.64 -2.39 -0.02 1.89 16 28 H 0.06 2.23 5.82 -2.39 -0.01 2.22 16 29 H 0.08 3.01 4.63 -2.38 -0.01 3.00 16 30 H 0.20 3.10 7.01 -2.91 -0.02 3.08 16 31 H 0.28 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.08 2.36 5.79 -2.39 -0.01 2.35 16 35 H 0.06 2.34 8.13 -2.39 -0.02 2.32 16 36 H 0.38 19.98 6.11 -92.70 -0.57 19.41 16 37 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 38 H 0.03 1.57 7.17 -2.39 -0.02 1.55 16 39 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -71.88 331.50 7.12 -64.76 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.56 Total: 25.95 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 5.06 Total: 19.70 kcal Atomic # 7 Polarization: -110.86 SS G_CDS: -2.69 Total: -113.55 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.01 Total: -27.81 kcal Atomic # 9 Polarization: -18.12 SS G_CDS: 2.17 Total: -15.95 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -71.88 7.12 -64.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998828134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.516 kcal (2) G-P(sol) polarization free energy of solvation -71.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds