Wall clock time and date at job start Tue Mar 31 2020 16:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34777 * 119.99958 * 2 1 4 4 O 1.21548 * 119.99901 * 180.20320 * 3 2 1 5 5 C 1.47824 * 119.99891 * 359.92829 * 3 2 1 6 6 N 1.28949 * 124.85170 * 170.62205 * 5 3 2 7 7 C 1.33210 * 118.15488 * 179.83985 * 6 5 3 8 8 C 1.41655 * 129.11991 * 180.15113 * 7 6 5 9 9 C 1.36494 * 118.88264 * 180.30587 * 8 7 6 10 10 C 1.38790 * 119.89957 * 359.97438 * 9 8 7 11 11 N 1.31387 * 120.95377 * 0.02562 * 10 9 8 12 12 C 1.33041 * 121.81856 * 0.02562 * 11 10 9 13 13 S 1.75852 * 124.85416 * 350.92597 * 5 3 2 14 14 C 1.46495 * 119.99936 * 179.97438 * 2 1 3 15 15 C 1.53790 * 113.61473 * 39.14115 * 14 2 1 16 16 C 1.53954 * 87.01820 * 220.04554 * 15 14 2 17 17 N 1.46496 * 113.74135 * 139.94644 * 16 15 14 18 18 C 1.36930 * 120.00400 * 107.40109 * 17 16 15 19 19 H 1.08001 * 120.00094 * 359.97438 * 18 17 16 20 20 C 1.38816 * 120.00399 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99755 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00253 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47020 * 89.99505 * 22 20 18 24 24 H 1.48496 * 109.46762 * 209.99816 * 22 20 18 25 25 H 1.48497 * 109.46976 * 329.99610 * 22 20 18 26 26 C 1.53775 * 113.61874 * 301.53164 * 14 2 1 27 27 H 1.08998 * 109.46772 * 83.43236 * 1 2 3 28 28 H 1.09005 * 109.46851 * 203.42938 * 1 2 3 29 29 H 1.08994 * 109.47035 * 323.42454 * 1 2 3 30 30 H 1.08009 * 120.55512 * 0.27753 * 8 7 6 31 31 H 1.08003 * 120.04771 * 180.02562 * 9 8 7 32 32 H 1.07999 * 119.52675 * 180.02562 * 10 9 8 33 33 H 1.09006 * 112.84951 * 170.33254 * 14 2 1 34 34 H 1.08999 * 113.60878 * 334.56437 * 15 14 2 35 35 H 1.09005 * 113.61451 * 105.46515 * 15 14 2 36 36 H 1.09003 * 113.53467 * 270.81071 * 16 15 14 37 37 H 0.97001 * 119.99691 * 287.39624 * 17 16 15 38 38 H 0.96999 * 119.99598 * 180.02562 * 21 20 18 39 39 H 1.08996 * 113.61731 * 254.53023 * 26 14 2 40 40 H 1.09005 * 113.61525 * 25.43189 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3544 1.1672 -0.0037 5 6 1.3998 2.4474 -0.0016 6 7 1.9353 3.6077 0.1707 7 6 1.1416 4.6770 0.1406 8 6 1.4775 6.0442 0.2974 9 6 0.4845 6.9786 0.2343 10 6 -0.8275 6.5804 0.0190 11 7 -1.1333 5.3108 -0.1257 12 6 -0.2083 4.3560 -0.0727 13 16 -0.3365 2.6050 -0.2312 14 6 2.1975 -1.2687 0.0006 15 6 1.5591 -2.3491 -0.8884 16 6 1.9075 -3.3556 0.2232 17 7 0.8614 -4.3523 0.4654 18 6 1.0451 -5.6488 0.0651 19 1 1.9610 -5.9367 -0.4295 20 6 0.0537 -6.5931 0.2942 21 7 -1.0627 -6.2422 0.8966 22 14 0.3041 -8.3617 -0.2525 23 1 0.9449 -9.1325 0.8432 24 1 -1.0105 -8.9688 -0.5817 25 1 1.1769 -8.3897 -1.4535 26 6 1.8675 -2.1701 1.2019 27 1 -0.3633 0.1175 -1.0209 28 1 -0.3633 -0.9430 0.4086 29 1 -0.3633 0.8252 0.6123 30 1 2.5022 6.3422 0.4645 31 1 0.7196 8.0262 0.3509 32 1 -1.6084 7.3248 -0.0303 33 1 3.2668 -1.1402 -0.1682 34 1 0.4875 -2.2155 -1.0363 35 1 2.0977 -2.5223 -1.8202 36 1 2.8974 -3.7988 0.1144 37 1 0.0387 -4.0937 0.9094 38 1 -1.7553 -6.9021 1.0569 39 1 2.6546 -2.1992 1.9553 40 1 0.8803 -1.9876 1.6265 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998908574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:35 Heat of formation + Delta-G solvation = 88.813547 kcal Electronic energy + Delta-G solvation = -24792.289796 eV Core-core repulsion = 21121.637223 eV Total energy + Delta-G solvation = -3670.652573 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.26059 -40.37240 -38.45925 -37.46538 -35.11598 -33.23953 -32.96216 -30.74735 -29.99266 -27.49872 -26.83474 -25.24858 -24.82297 -24.29773 -23.24390 -21.74439 -20.03077 -19.06271 -18.97676 -17.83502 -17.41971 -17.13270 -16.67728 -16.19810 -16.19575 -15.47495 -15.13539 -14.68959 -14.56289 -14.05777 -13.84135 -13.58965 -13.46699 -13.19404 -13.10122 -12.93392 -12.86776 -12.18238 -11.94733 -11.84185 -11.32372 -11.01994 -10.95773 -10.80843 -10.61431 -10.55427 -10.36743 -10.16619 -10.01669 -9.68610 -9.56934 -9.33647 -9.00047 -8.95818 -8.64320 -7.05613 -5.85509 -3.14742 -0.48337 0.53973 0.55606 1.16123 1.54976 2.38246 2.74975 3.23722 3.39535 3.45366 3.46492 3.54052 3.90268 4.08160 4.26637 4.36917 4.53598 4.70539 4.72355 4.92134 5.03404 5.07301 5.21207 5.24565 5.33059 5.39721 5.48559 5.48732 5.76218 5.81634 5.88081 6.02037 6.17669 6.19055 6.24437 6.47385 6.60770 6.82295 7.00181 7.16364 7.19664 7.64333 7.79396 8.32724 9.44442 9.99722 10.34206 11.36657 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.031513 B = 0.002256 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.309876 B =12409.773834 C =13082.735653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.582 5.582 3 C 0.588 3.412 4 O -0.497 6.497 5 C 0.068 3.932 6 N -0.399 5.399 7 C 0.025 3.975 8 C -0.008 4.008 9 C -0.170 4.170 10 C 0.144 3.856 11 N -0.446 5.446 12 C -0.002 4.002 13 S 0.176 5.824 14 C 0.118 3.882 15 C -0.175 4.175 16 C 0.171 3.829 17 N -0.708 5.708 18 C -0.246 4.246 19 H 0.073 0.927 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.163 4.163 27 H 0.075 0.925 28 H 0.111 0.889 29 H 0.074 0.926 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.172 0.828 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.385 0.615 38 H 0.256 0.744 39 H 0.068 0.932 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.492 26.310 -1.532 26.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.314 5.314 3 C 0.369 3.631 4 O -0.370 6.370 5 C -0.217 4.217 6 N -0.114 5.114 7 C -0.101 4.101 8 C -0.036 4.036 9 C -0.193 4.193 10 C -0.028 4.028 11 N -0.157 5.157 12 C -0.248 4.248 13 S 0.431 5.569 14 C 0.015 3.985 15 C -0.217 4.217 16 C 0.058 3.942 17 N -0.346 5.346 18 C -0.377 4.377 19 H 0.091 0.909 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.204 4.204 27 H 0.093 0.907 28 H 0.130 0.870 29 H 0.091 0.909 30 H 0.167 0.833 31 H 0.168 0.832 32 H 0.189 0.811 33 H 0.139 0.861 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.219 0.781 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.111 25.015 -1.834 25.082 hybrid contribution 0.665 0.515 0.116 0.849 sum 0.776 25.529 -1.717 25.599 Atomic orbital electron populations 1.22126 0.79646 1.04260 1.03137 1.47698 1.06932 1.05470 1.71342 1.16896 0.86549 0.81199 0.78429 1.90837 1.12014 1.85764 1.48388 1.27220 0.93454 0.96380 1.04686 1.65599 1.37168 0.97088 1.11576 1.19931 0.89044 0.94379 1.06730 1.21067 1.01208 0.88473 0.92877 1.21773 0.93703 1.01259 1.02536 1.23104 0.95914 0.91821 0.91995 1.67269 1.34812 1.00496 1.13077 1.25932 0.93084 1.02034 1.03733 1.85938 1.06956 0.93565 1.70394 1.22844 0.97415 0.78823 0.99377 1.24429 1.01257 0.96275 0.99764 1.21353 0.93975 0.87208 0.91697 1.42340 1.17123 1.05571 1.69571 1.19302 1.01292 0.85458 1.31632 0.90931 1.24773 0.96495 0.98351 1.01160 1.69652 1.07270 1.33743 1.47294 0.86177 0.76832 0.84871 0.78227 1.21650 1.21755 1.20671 1.23979 1.02150 0.96914 0.97309 0.90686 0.87049 0.90868 0.83264 0.83151 0.81086 0.86124 0.89652 0.91655 0.90012 0.78076 0.93400 0.91276 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.56 7.62 59.85 0.46 1.02 16 2 N -0.58 -7.64 3.08 -174.12 -0.54 -8.18 16 3 C 0.59 8.71 7.69 -12.34 -0.09 8.61 16 4 O -0.50 -8.90 16.53 5.32 0.09 -8.81 16 5 C 0.07 0.92 7.18 -14.84 -0.11 0.81 16 6 N -0.40 -5.69 10.46 -8.53 -0.09 -5.78 16 7 C 0.02 0.30 6.95 -85.16 -0.59 -0.29 16 8 C -0.01 -0.07 10.18 -38.91 -0.40 -0.46 16 9 C -0.17 -0.99 10.00 -40.01 -0.40 -1.39 16 10 C 0.14 1.00 11.18 -17.54 -0.20 0.81 16 11 N -0.45 -4.79 10.38 -11.60 -0.12 -4.91 16 12 C 0.00 -0.03 7.72 -16.22 -0.13 -0.15 16 13 S 0.18 1.90 18.14 -107.50 -1.95 -0.05 16 14 C 0.12 1.67 4.21 -67.12 -0.28 1.39 16 15 C -0.18 -2.71 7.31 -25.82 -0.19 -2.90 16 16 C 0.17 3.09 4.48 -67.03 -0.30 2.79 16 17 N -0.71 -16.52 5.41 -52.55 -0.28 -16.80 16 18 C -0.25 -6.50 9.97 -15.06 -0.15 -6.65 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.01 13.06 55.49 0.72 -26.28 16 22 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C -0.16 -2.49 7.34 -25.92 -0.19 -2.68 16 27 H 0.07 0.69 7.73 -51.93 -0.40 0.29 16 28 H 0.11 1.19 6.09 -51.93 -0.32 0.88 16 29 H 0.07 0.70 4.65 -23.38 -0.11 0.59 16 30 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 31 H 0.15 0.32 8.06 -52.48 -0.42 -0.10 16 32 H 0.17 0.55 8.06 -52.49 -0.42 0.12 16 33 H 0.12 1.77 7.21 -51.93 -0.37 1.40 16 34 H 0.08 1.33 6.66 -51.93 -0.35 0.99 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 37 H 0.39 9.46 7.92 -40.82 -0.32 9.13 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 1.26 6.89 -51.93 -0.36 0.90 16 LS Contribution 347.14 15.07 5.23 5.23 Total: -1.00 -33.47 347.14 -8.93 -42.40 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -4.31 Total: 6.00 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -2.66 Total: 0.49 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -0.31 Total: -61.95 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.81 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -1.95 Total: -0.05 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.47 -8.93 -42.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998908574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.211 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds