Wall clock time and date at job start Tue Mar 31 2020 16:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34777 * 119.99958 * 2 1 4 4 O 1.21548 * 119.99901 * 180.20320 * 3 2 1 5 5 C 1.47824 * 119.99891 * 359.92829 * 3 2 1 6 6 N 1.28949 * 124.85170 * 170.62205 * 5 3 2 7 7 C 1.33210 * 118.15488 * 179.83985 * 6 5 3 8 8 C 1.41655 * 129.11991 * 180.15113 * 7 6 5 9 9 C 1.36494 * 118.88264 * 180.30587 * 8 7 6 10 10 C 1.38790 * 119.89957 * 359.97438 * 9 8 7 11 11 N 1.31387 * 120.95377 * 0.02562 * 10 9 8 12 12 C 1.33041 * 121.81856 * 0.02562 * 11 10 9 13 13 S 1.75852 * 124.85416 * 350.92597 * 5 3 2 14 14 C 1.46495 * 119.99936 * 179.97438 * 2 1 3 15 15 C 1.53790 * 113.61473 * 39.14115 * 14 2 1 16 16 C 1.53954 * 87.01820 * 220.04554 * 15 14 2 17 17 N 1.46496 * 113.74135 * 139.94644 * 16 15 14 18 18 C 1.36930 * 120.00400 * 107.40109 * 17 16 15 19 19 H 1.08001 * 120.00094 * 359.97438 * 18 17 16 20 20 C 1.38816 * 120.00399 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99755 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00253 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47020 * 89.99505 * 22 20 18 24 24 H 1.48496 * 109.46762 * 209.99816 * 22 20 18 25 25 H 1.48497 * 109.46976 * 329.99610 * 22 20 18 26 26 C 1.53775 * 113.61874 * 301.53164 * 14 2 1 27 27 H 1.08998 * 109.46772 * 83.43236 * 1 2 3 28 28 H 1.09005 * 109.46851 * 203.42938 * 1 2 3 29 29 H 1.08994 * 109.47035 * 323.42454 * 1 2 3 30 30 H 1.08009 * 120.55512 * 0.27753 * 8 7 6 31 31 H 1.08003 * 120.04771 * 180.02562 * 9 8 7 32 32 H 1.07999 * 119.52675 * 180.02562 * 10 9 8 33 33 H 1.09006 * 112.84951 * 170.33254 * 14 2 1 34 34 H 1.08999 * 113.60878 * 334.56437 * 15 14 2 35 35 H 1.09005 * 113.61451 * 105.46515 * 15 14 2 36 36 H 1.09003 * 113.53467 * 270.81071 * 16 15 14 37 37 H 0.97001 * 119.99691 * 287.39624 * 17 16 15 38 38 H 0.96999 * 119.99598 * 180.02562 * 21 20 18 39 39 H 1.08996 * 113.61731 * 254.53023 * 26 14 2 40 40 H 1.09005 * 113.61525 * 25.43189 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3544 1.1672 -0.0037 5 6 1.3998 2.4474 -0.0016 6 7 1.9353 3.6077 0.1707 7 6 1.1416 4.6770 0.1406 8 6 1.4775 6.0442 0.2974 9 6 0.4845 6.9786 0.2343 10 6 -0.8275 6.5804 0.0190 11 7 -1.1333 5.3108 -0.1257 12 6 -0.2083 4.3560 -0.0727 13 16 -0.3365 2.6050 -0.2312 14 6 2.1975 -1.2687 0.0006 15 6 1.5591 -2.3491 -0.8884 16 6 1.9075 -3.3556 0.2232 17 7 0.8614 -4.3523 0.4654 18 6 1.0451 -5.6488 0.0651 19 1 1.9610 -5.9367 -0.4295 20 6 0.0537 -6.5931 0.2942 21 7 -1.0627 -6.2422 0.8966 22 14 0.3041 -8.3617 -0.2525 23 1 0.9449 -9.1325 0.8432 24 1 -1.0105 -8.9688 -0.5817 25 1 1.1769 -8.3897 -1.4535 26 6 1.8675 -2.1701 1.2019 27 1 -0.3633 0.1175 -1.0209 28 1 -0.3633 -0.9430 0.4086 29 1 -0.3633 0.8252 0.6123 30 1 2.5022 6.3422 0.4645 31 1 0.7196 8.0262 0.3509 32 1 -1.6084 7.3248 -0.0303 33 1 3.2668 -1.1402 -0.1682 34 1 0.4875 -2.2155 -1.0363 35 1 2.0977 -2.5223 -1.8202 36 1 2.8974 -3.7988 0.1144 37 1 0.0387 -4.0937 0.9094 38 1 -1.7553 -6.9021 1.0569 39 1 2.6546 -2.1992 1.9553 40 1 0.8803 -1.9876 1.6265 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998908574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:34 Heat of formation + Delta-G solvation = 64.881095 kcal Electronic energy + Delta-G solvation = -24793.327585 eV Core-core repulsion = 21121.637223 eV Total energy + Delta-G solvation = -3671.690362 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.05367 -41.47378 -39.62920 -38.41274 -36.43432 -34.98881 -33.59369 -32.08144 -31.28936 -28.48734 -27.86860 -26.56745 -26.13088 -25.36916 -24.33925 -22.88990 -21.08986 -20.35919 -19.88138 -19.05604 -18.68224 -18.32708 -17.56531 -17.26400 -17.17519 -16.41531 -16.11975 -16.03524 -15.97007 -15.38688 -14.95685 -14.59474 -14.47536 -14.46345 -14.19505 -13.82995 -13.69653 -13.50954 -13.26723 -13.12802 -12.80011 -12.68425 -12.24850 -12.13942 -12.03495 -11.86027 -11.66538 -11.57516 -11.39337 -11.11849 -10.85777 -10.37491 -10.16948 -9.90866 -9.59740 -8.96858 -7.92667 -5.20203 -1.29925 -0.28444 -0.09505 0.32214 0.69886 1.35214 1.50815 1.51284 1.59493 1.73873 2.54829 2.58451 2.67212 3.16555 3.36945 3.39062 3.54183 3.70884 3.73752 3.83678 3.84633 3.96603 4.23585 4.25989 4.27652 4.34741 4.45306 4.61821 4.70374 4.72997 4.85421 4.89100 4.96020 5.00240 5.16904 5.30503 5.37358 5.49588 5.59960 5.94984 6.19964 6.29761 6.52923 6.68717 7.37012 8.11952 8.35480 9.30181 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.031513 B = 0.002256 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.309876 B =12409.773834 C =13082.735653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.577 5.577 3 C 0.589 3.411 4 O -0.538 6.538 5 C 0.037 3.963 6 N -0.422 5.422 7 C -0.005 4.005 8 C -0.019 4.019 9 C -0.148 4.148 10 C 0.153 3.847 11 N -0.476 5.476 12 C -0.021 4.021 13 S 0.213 5.787 14 C 0.132 3.868 15 C -0.161 4.161 16 C 0.154 3.846 17 N -0.721 5.721 18 C -0.241 4.241 19 H 0.077 0.923 20 C -0.074 4.074 21 N -0.967 5.967 22 Si 0.968 3.032 23 H -0.290 1.290 24 H -0.297 1.297 25 H -0.270 1.270 26 C -0.151 4.151 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.165 0.835 31 H 0.198 0.802 32 H 0.214 0.786 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.376 0.624 38 H 0.250 0.750 39 H 0.074 0.926 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.000 29.047 -1.973 29.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.308 5.308 3 C 0.372 3.628 4 O -0.415 6.415 5 C -0.246 4.246 6 N -0.139 5.139 7 C -0.131 4.131 8 C -0.048 4.048 9 C -0.170 4.170 10 C -0.019 4.019 11 N -0.187 5.187 12 C -0.266 4.266 13 S 0.468 5.532 14 C 0.029 3.971 15 C -0.202 4.202 16 C 0.044 3.956 17 N -0.358 5.358 18 C -0.373 4.373 19 H 0.095 0.905 20 C -0.266 4.266 21 N -0.617 5.617 22 Si 0.798 3.202 23 H -0.217 1.217 24 H -0.224 1.224 25 H -0.195 1.195 26 C -0.191 4.191 27 H 0.109 0.891 28 H 0.130 0.870 29 H 0.102 0.898 30 H 0.183 0.817 31 H 0.215 0.785 32 H 0.231 0.769 33 H 0.136 0.864 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.209 0.791 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.358 27.772 -2.294 27.869 hybrid contribution 0.785 -0.031 0.256 0.826 sum 0.427 27.741 -2.038 27.819 Atomic orbital electron populations 1.22319 0.77958 1.04791 1.04493 1.47652 1.07903 1.04671 1.70620 1.17102 0.86189 0.81963 0.77553 1.90797 1.13714 1.86520 1.50477 1.26803 0.95052 0.95650 1.07140 1.65571 1.38729 0.97895 1.11663 1.20333 0.89140 0.95284 1.08374 1.21494 1.02969 0.87421 0.92870 1.22296 0.92388 1.02923 0.99393 1.23980 0.97712 0.91223 0.88979 1.67345 1.34848 1.01783 1.14758 1.26075 0.93434 1.02661 1.04431 1.85522 1.04200 0.93774 1.69676 1.22552 0.97329 0.79136 0.98102 1.24199 1.01540 0.95318 0.99179 1.21632 0.92683 0.87231 0.94101 1.42467 1.17957 1.05616 1.69801 1.19676 1.00915 0.86793 1.29960 0.90497 1.25499 0.96697 1.01957 1.02456 1.69790 1.08076 1.34477 1.49371 0.85213 0.76359 0.80638 0.77992 1.21723 1.22414 1.19521 1.23835 1.02614 0.95369 0.97288 0.89053 0.87022 0.89771 0.81707 0.78480 0.76947 0.86399 0.89484 0.91140 0.90124 0.79096 0.94076 0.90746 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.99 7.62 127.77 0.97 1.96 16 2 N -0.58 -15.06 3.08 -823.06 -2.54 -17.59 16 3 C 0.59 17.80 7.69 86.78 0.67 18.47 16 4 O -0.54 -19.94 16.53 -3.87 -0.06 -20.01 16 5 C 0.04 1.02 7.18 87.65 0.63 1.65 16 6 N -0.42 -12.25 10.46 -180.89 -1.89 -14.14 16 7 C -0.01 -0.13 6.95 40.30 0.28 0.15 16 8 C -0.02 -0.28 10.18 22.71 0.23 -0.05 16 9 C -0.15 -1.12 10.00 21.99 0.22 -0.90 16 10 C 0.15 1.54 11.18 84.89 0.95 2.49 16 11 N -0.48 -9.20 10.38 -190.61 -1.98 -11.18 16 12 C -0.02 -0.48 7.72 85.03 0.66 0.17 16 13 S 0.21 4.51 18.14 -56.49 -1.02 3.48 16 14 C 0.13 3.70 4.21 45.52 0.19 3.89 16 15 C -0.16 -4.88 7.31 31.18 0.23 -4.65 16 16 C 0.15 5.55 4.48 45.58 0.20 5.76 16 17 N -0.72 -33.79 5.41 -320.17 -1.73 -35.52 16 18 C -0.24 -12.79 9.97 84.04 0.84 -11.95 16 19 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 20 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 21 N -0.97 -56.94 13.06 21.65 0.28 -56.66 16 22 Si 0.97 44.97 29.55 68.60 2.03 47.00 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 26 C -0.15 -4.55 7.34 31.12 0.23 -4.32 16 27 H 0.09 1.58 7.73 -2.39 -0.02 1.56 16 28 H 0.11 2.30 6.09 -2.38 -0.01 2.29 16 29 H 0.09 1.55 4.65 -20.55 -0.10 1.46 16 30 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 31 H 0.20 -0.37 8.06 -2.91 -0.02 -0.39 16 32 H 0.21 0.22 8.06 -2.91 -0.02 0.20 16 33 H 0.12 3.46 7.21 -2.38 -0.02 3.44 16 34 H 0.09 2.65 6.66 -2.39 -0.02 2.63 16 35 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.08 2.91 8.10 -2.39 -0.02 2.89 16 37 H 0.38 18.75 7.92 -92.71 -0.73 18.01 16 38 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.09 2.59 6.89 -2.38 -0.02 2.57 16 Total: -1.00 -74.63 347.14 0.13 -74.50 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.29 Total: 21.05 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 6.76 Total: 9.06 kcal Atomic # 7 Polarization: -127.24 SS G_CDS: -7.86 Total: -135.09 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.06 Total: -20.01 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: 4.51 SS G_CDS: -1.02 Total: 3.48 kcal Total: -74.63 0.13 -74.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998908574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.383 kcal (2) G-P(sol) polarization free energy of solvation -74.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds