Wall clock time and date at job start Tue Mar 31 2020 16:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34781 * 119.99852 * 2 1 4 4 O 1.21520 * 119.99815 * 184.19462 * 3 2 1 5 5 C 1.48086 * 119.99834 * 4.19606 * 3 2 1 6 6 N 1.32700 * 120.59700 * 353.63047 * 5 3 2 7 7 C 1.31720 * 121.24945 * 180.02562 * 6 5 3 8 8 N 1.31531 * 122.33204 * 359.97438 * 7 6 5 9 9 C 1.33226 * 121.08041 * 0.04751 * 8 7 6 10 10 S 1.75737 * 131.40438 * 180.02562 * 9 8 7 11 11 C 1.75350 * 92.19908 * 179.76523 * 10 9 8 12 12 C 1.32143 * 111.48085 * 0.34909 * 11 10 9 13 13 C 1.40613 * 119.06812 * 359.95534 * 9 8 7 14 14 C 1.46498 * 120.00351 * 179.97438 * 2 1 3 15 15 H 1.08998 * 110.64259 * 178.30854 * 14 2 1 16 16 C 1.55155 * 110.71805 * 54.97623 * 14 2 1 17 17 C 1.54915 * 101.58127 * 277.14001 * 16 14 2 18 18 N 1.47421 * 104.83120 * 322.98919 * 17 16 14 19 19 C 1.36935 * 125.64902 * 204.16438 * 18 17 16 20 20 H 1.07999 * 120.00112 * 329.26008 * 19 18 17 21 21 C 1.38811 * 119.99870 * 149.26099 * 19 18 17 22 22 N 1.31628 * 120.00039 * 166.35885 * 21 19 18 23 23 Si 1.86802 * 120.00367 * 346.35793 * 21 19 18 24 24 H 1.48495 * 109.47280 * 84.42331 * 23 21 19 25 25 H 1.48500 * 109.47411 * 204.42902 * 23 21 19 26 26 H 1.48508 * 109.46706 * 324.42737 * 23 21 19 27 27 C 1.47020 * 108.70260 * 24.12942 * 18 17 16 28 28 H 1.08994 * 109.47716 * 84.03781 * 1 2 3 29 29 H 1.09002 * 109.46889 * 204.03888 * 1 2 3 30 30 H 1.08997 * 109.46896 * 324.03400 * 1 2 3 31 31 H 1.08004 * 118.82977 * 180.02562 * 7 6 5 32 32 H 1.07998 * 124.25860 * 180.24404 * 11 10 9 33 33 H 1.08004 * 122.56154 * 179.85869 * 12 11 10 34 34 H 1.09008 * 111.00616 * 35.20966 * 16 14 2 35 35 H 1.09000 * 111.00876 * 159.06330 * 16 14 2 36 36 H 1.08997 * 110.36488 * 204.15221 * 17 16 14 37 37 H 1.09000 * 110.45828 * 81.87601 * 17 16 14 38 38 H 0.96997 * 119.99894 * 180.02562 * 22 21 19 39 39 H 1.09005 * 109.88447 * 239.52730 * 27 18 17 40 40 H 1.09002 * 109.88635 * 118.35685 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3516 1.1687 -0.0770 5 6 1.4013 2.4480 0.0938 6 7 0.0752 2.4683 0.0518 7 6 -0.5938 3.6001 0.1336 8 7 0.0056 4.7639 0.2609 9 6 1.3340 4.8514 0.3126 10 16 2.4021 6.2373 0.4764 11 6 3.8330 5.2246 0.4363 12 6 3.5188 3.9481 0.3020 13 6 2.0998 3.6750 0.2298 14 6 2.1976 -1.2687 0.0006 15 1 3.2726 -1.0916 -0.0296 16 6 1.7508 -2.1610 -1.1875 17 6 0.4719 -2.8225 -0.6158 18 7 0.7745 -3.0617 0.8070 19 6 0.1822 -4.0072 1.6010 20 1 -0.8406 -4.3020 1.4183 21 6 0.8964 -4.5867 2.6407 22 7 0.2672 -5.2845 3.5626 23 14 2.7503 -4.3765 2.7316 24 1 3.0704 -3.0906 3.4017 25 1 3.3383 -5.4984 3.5066 26 1 3.3159 -4.3733 1.3585 27 6 1.8183 -2.1176 1.2322 28 1 -0.3634 0.1067 -1.0220 29 1 -0.3633 -0.9386 0.4186 30 1 -0.3633 0.8317 0.6035 31 1 -1.6728 3.5712 0.0957 32 1 4.8439 5.5974 0.5102 33 1 4.2642 3.1679 0.2547 34 1 1.5193 -1.5567 -2.0646 35 1 2.5077 -2.9101 -1.4198 36 1 0.2726 -3.7654 -1.1250 37 1 -0.3811 -2.1511 -0.7146 38 1 0.7662 -5.6892 4.2893 39 1 2.6911 -2.6653 1.5878 40 1 1.4351 -1.4728 2.0231 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033092525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:24 Heat of formation + Delta-G solvation = 105.985969 kcal Electronic energy + Delta-G solvation = -26275.978293 eV Core-core repulsion = 22606.070372 eV Total energy + Delta-G solvation = -3669.907920 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -41.65413 -39.85433 -37.84373 -36.57065 -34.82291 -33.88257 -32.20199 -30.61279 -29.72718 -28.61094 -26.73454 -25.76187 -25.11443 -24.09453 -22.06975 -21.56058 -20.34756 -19.75321 -18.80190 -18.16623 -16.97316 -16.62098 -16.32381 -16.04237 -15.89868 -15.29934 -15.27668 -14.84942 -14.40620 -14.37696 -13.55511 -13.27747 -13.21053 -12.98918 -12.85130 -12.74509 -12.39462 -12.34276 -11.67576 -11.44926 -11.43156 -11.37631 -11.23108 -11.05001 -10.79164 -10.62201 -10.45639 -10.32362 -10.05045 -9.53757 -9.46613 -9.13746 -8.67184 -8.57545 -8.43955 -6.95325 -5.99967 -3.42576 -0.20657 0.25416 0.70306 1.42190 1.81057 2.53577 2.76883 3.31498 3.42704 3.44300 3.46780 3.60479 3.82352 4.05439 4.13105 4.48648 4.64892 4.73941 4.93904 5.07138 5.23148 5.26270 5.34139 5.55761 5.55921 5.62556 5.67793 5.81721 5.87253 5.91156 5.91815 6.20271 6.26329 6.31555 6.39336 6.45736 6.59174 6.72727 6.78927 7.35877 7.51080 7.78925 7.99295 8.29152 8.78779 9.62646 10.14853 11.16398 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.020462 B = 0.003237 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.090853 B = 8647.657847 C = 9019.263859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.565 5.565 3 C 0.562 3.438 4 O -0.531 6.531 5 C 0.197 3.803 6 N -0.482 5.482 7 C 0.303 3.697 8 N -0.477 5.477 9 C 0.086 3.914 10 S 0.163 5.837 11 C -0.197 4.197 12 C -0.088 4.088 13 C -0.135 4.135 14 C 0.122 3.878 15 H 0.107 0.893 16 C -0.142 4.142 17 C 0.121 3.879 18 N -0.608 5.608 19 C -0.246 4.246 20 H 0.090 0.910 21 C 0.028 3.972 22 N -0.910 5.910 23 Si 0.896 3.104 24 H -0.286 1.286 25 H -0.303 1.303 26 H -0.274 1.274 27 C 0.110 3.890 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.212 0.788 32 H 0.181 0.819 33 H 0.172 0.828 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.038 0.962 38 H 0.264 0.736 39 H 0.037 0.963 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.380 22.184 -9.175 24.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.294 5.294 3 C 0.347 3.653 4 O -0.408 6.408 5 C 0.041 3.959 6 N -0.199 5.199 7 C 0.012 3.988 8 N -0.193 5.193 9 C -0.168 4.168 10 S 0.421 5.579 11 C -0.331 4.331 12 C -0.118 4.118 13 C -0.150 4.150 14 C 0.019 3.981 15 H 0.125 0.875 16 C -0.181 4.181 17 C -0.004 4.004 18 N -0.336 5.336 19 C -0.373 4.373 20 H 0.107 0.893 21 C -0.171 4.171 22 N -0.553 5.553 23 Si 0.729 3.271 24 H -0.214 1.214 25 H -0.231 1.231 26 H -0.201 1.201 27 C -0.015 4.015 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.228 0.772 32 H 0.198 0.802 33 H 0.189 0.811 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.798 23.548 -8.902 25.329 hybrid contribution 1.953 -1.425 0.142 2.421 sum 4.750 22.123 -8.760 24.263 Atomic orbital electron populations 1.22835 0.77454 1.05880 1.02682 1.47767 1.08585 1.04654 1.68434 1.17682 0.86506 0.82618 0.78516 1.90728 1.12695 1.86385 1.50960 1.21727 0.89522 0.92925 0.91704 1.68859 1.07051 1.30030 1.14008 1.25191 1.01477 0.81534 0.90558 1.67893 1.07804 1.30071 1.13564 1.24089 0.94563 0.97582 1.00584 1.84308 0.93290 1.04347 1.75927 1.25487 1.02924 0.96690 1.08009 1.21079 0.93844 0.97356 0.99513 1.20597 0.95437 0.93888 1.05064 1.22264 0.97014 0.81871 0.96951 0.87528 1.23111 1.00029 0.98523 0.96428 1.21983 0.94352 0.98218 0.85827 1.44721 1.45399 1.37688 1.05792 1.18595 0.95889 1.13563 1.09248 0.89294 1.25282 0.97702 0.96714 0.97444 1.69757 1.35397 1.37167 1.12985 0.86740 0.87236 0.75909 0.77248 1.21381 1.23124 1.20060 1.22052 0.93421 0.91526 0.94533 0.92637 0.88685 0.87704 0.77188 0.80157 0.81127 0.91109 0.90095 0.93054 0.94437 0.92570 0.94625 0.93776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.77 7.72 59.85 0.46 1.23 16 2 N -0.56 -9.04 2.82 -172.87 -0.49 -9.53 16 3 C 0.56 8.89 7.66 -12.22 -0.09 8.80 16 4 O -0.53 -9.12 13.99 5.35 0.07 -9.04 16 5 C 0.20 2.75 6.72 -82.07 -0.55 2.20 16 6 N -0.48 -5.93 6.13 -10.79 -0.07 -6.00 16 7 C 0.30 3.15 12.25 -92.44 -1.13 2.02 16 8 N -0.48 -5.60 10.45 -13.27 -0.14 -5.74 16 9 C 0.09 1.02 7.70 -16.05 -0.12 0.90 16 10 S 0.16 1.43 23.23 -107.50 -2.50 -1.07 16 11 C -0.20 -1.62 11.03 28.81 0.32 -1.31 16 12 C -0.09 -0.98 9.64 -38.96 -0.38 -1.35 16 13 C -0.13 -1.73 6.02 -105.08 -0.63 -2.37 16 14 C 0.12 2.15 3.58 -66.10 -0.24 1.92 16 15 H 0.11 1.88 6.99 -51.93 -0.36 1.52 16 16 C -0.14 -2.28 6.53 -24.58 -0.16 -2.44 16 17 C 0.12 2.25 6.34 -2.53 -0.02 2.23 16 18 N -0.61 -14.09 2.65 -170.07 -0.45 -14.54 16 19 C -0.25 -6.77 10.58 -15.06 -0.16 -6.93 16 20 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 21 C 0.03 0.81 5.48 -17.43 -0.10 0.72 16 22 N -0.91 -27.78 13.97 55.49 0.78 -27.00 16 23 Si 0.90 22.84 24.41 -169.99 -4.15 18.69 16 24 H -0.29 -7.18 6.96 56.52 0.39 -6.78 16 25 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 26 H -0.27 -6.79 6.86 56.52 0.39 -6.40 16 27 C 0.11 2.38 4.79 -3.07 -0.01 2.36 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.59 4.75 -51.93 -0.25 1.34 16 30 H 0.11 1.44 5.08 -53.61 -0.27 1.17 16 31 H 0.21 1.33 8.06 -52.48 -0.42 0.91 16 32 H 0.18 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.17 1.98 6.50 -52.48 -0.34 1.64 16 34 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.04 0.65 5.54 -51.93 -0.29 0.36 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.04 0.85 3.04 -51.93 -0.16 0.69 16 40 H 0.04 1.00 8.04 -51.93 -0.42 0.58 16 LS Contribution 329.62 15.07 4.97 4.97 Total: -1.00 -32.43 329.62 -8.99 -41.42 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.20 Total: -0.13 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -2.81 Total: 7.98 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: -0.37 Total: -62.81 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.15 Total: 18.69 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.50 Total: -1.07 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.43 -8.99 -41.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033092525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.408 kcal (2) G-P(sol) polarization free energy of solvation -32.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds