Wall clock time and date at job start Tue Mar 31 2020 16:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34781 * 119.99852 * 2 1 4 4 O 1.21520 * 119.99815 * 184.19462 * 3 2 1 5 5 C 1.48086 * 119.99834 * 4.19606 * 3 2 1 6 6 N 1.32700 * 120.59700 * 353.63047 * 5 3 2 7 7 C 1.31720 * 121.24945 * 180.02562 * 6 5 3 8 8 N 1.31531 * 122.33204 * 359.97438 * 7 6 5 9 9 C 1.33226 * 121.08041 * 0.04751 * 8 7 6 10 10 S 1.75737 * 131.40438 * 180.02562 * 9 8 7 11 11 C 1.75350 * 92.19908 * 179.76523 * 10 9 8 12 12 C 1.32143 * 111.48085 * 0.34909 * 11 10 9 13 13 C 1.40613 * 119.06812 * 359.95534 * 9 8 7 14 14 C 1.46498 * 120.00351 * 179.97438 * 2 1 3 15 15 H 1.08998 * 110.64259 * 178.30854 * 14 2 1 16 16 C 1.55155 * 110.71805 * 54.97623 * 14 2 1 17 17 C 1.54915 * 101.58127 * 277.14001 * 16 14 2 18 18 N 1.47421 * 104.83120 * 322.98919 * 17 16 14 19 19 C 1.36935 * 125.64902 * 204.16438 * 18 17 16 20 20 H 1.07999 * 120.00112 * 329.26008 * 19 18 17 21 21 C 1.38811 * 119.99870 * 149.26099 * 19 18 17 22 22 N 1.31628 * 120.00039 * 166.35885 * 21 19 18 23 23 Si 1.86802 * 120.00367 * 346.35793 * 21 19 18 24 24 H 1.48495 * 109.47280 * 84.42331 * 23 21 19 25 25 H 1.48500 * 109.47411 * 204.42902 * 23 21 19 26 26 H 1.48508 * 109.46706 * 324.42737 * 23 21 19 27 27 C 1.47020 * 108.70260 * 24.12942 * 18 17 16 28 28 H 1.08994 * 109.47716 * 84.03781 * 1 2 3 29 29 H 1.09002 * 109.46889 * 204.03888 * 1 2 3 30 30 H 1.08997 * 109.46896 * 324.03400 * 1 2 3 31 31 H 1.08004 * 118.82977 * 180.02562 * 7 6 5 32 32 H 1.07998 * 124.25860 * 180.24404 * 11 10 9 33 33 H 1.08004 * 122.56154 * 179.85869 * 12 11 10 34 34 H 1.09008 * 111.00616 * 35.20966 * 16 14 2 35 35 H 1.09000 * 111.00876 * 159.06330 * 16 14 2 36 36 H 1.08997 * 110.36488 * 204.15221 * 17 16 14 37 37 H 1.09000 * 110.45828 * 81.87601 * 17 16 14 38 38 H 0.96997 * 119.99894 * 180.02562 * 22 21 19 39 39 H 1.09005 * 109.88447 * 239.52730 * 27 18 17 40 40 H 1.09002 * 109.88635 * 118.35685 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3516 1.1687 -0.0770 5 6 1.4013 2.4480 0.0938 6 7 0.0752 2.4683 0.0518 7 6 -0.5938 3.6001 0.1336 8 7 0.0056 4.7639 0.2609 9 6 1.3340 4.8514 0.3126 10 16 2.4021 6.2373 0.4764 11 6 3.8330 5.2246 0.4363 12 6 3.5188 3.9481 0.3020 13 6 2.0998 3.6750 0.2298 14 6 2.1976 -1.2687 0.0006 15 1 3.2726 -1.0916 -0.0296 16 6 1.7508 -2.1610 -1.1875 17 6 0.4719 -2.8225 -0.6158 18 7 0.7745 -3.0617 0.8070 19 6 0.1822 -4.0072 1.6010 20 1 -0.8406 -4.3020 1.4183 21 6 0.8964 -4.5867 2.6407 22 7 0.2672 -5.2845 3.5626 23 14 2.7503 -4.3765 2.7316 24 1 3.0704 -3.0906 3.4017 25 1 3.3383 -5.4984 3.5066 26 1 3.3159 -4.3733 1.3585 27 6 1.8183 -2.1176 1.2322 28 1 -0.3634 0.1067 -1.0220 29 1 -0.3633 -0.9386 0.4186 30 1 -0.3633 0.8317 0.6035 31 1 -1.6728 3.5712 0.0957 32 1 4.8439 5.5974 0.5102 33 1 4.2642 3.1679 0.2547 34 1 1.5193 -1.5567 -2.0646 35 1 2.5077 -2.9101 -1.4198 36 1 0.2726 -3.7654 -1.1250 37 1 -0.3811 -2.1511 -0.7146 38 1 0.7662 -5.6892 4.2893 39 1 2.6911 -2.6653 1.5878 40 1 1.4351 -1.4728 2.0231 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033092525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:24 Heat of formation + Delta-G solvation = 85.677399 kcal Electronic energy + Delta-G solvation = -26276.858939 eV Core-core repulsion = 22606.070372 eV Total energy + Delta-G solvation = -3670.788566 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.58201 -41.09597 -39.27364 -37.42329 -36.11508 -35.05427 -34.07009 -31.66856 -31.23210 -30.12075 -27.91646 -27.01206 -26.07645 -25.71479 -23.27963 -22.34807 -22.06367 -21.03054 -19.66964 -19.33984 -18.90548 -17.85824 -17.56833 -17.15214 -16.98384 -16.71985 -16.19499 -15.94749 -15.64190 -15.30608 -15.16200 -15.12709 -14.62393 -14.30434 -13.92309 -13.82338 -13.63650 -13.42351 -13.32012 -13.05311 -12.97424 -12.50420 -12.42501 -12.25203 -12.15907 -12.14010 -11.93006 -11.84324 -11.58379 -11.36160 -10.79235 -10.28004 -10.19713 -9.71865 -9.29481 -8.91177 -8.22012 -5.59894 -1.09941 -0.61998 -0.04548 0.68509 1.02996 1.26595 1.33152 1.41297 1.45502 1.62223 2.36254 2.51290 2.63715 3.00184 3.03751 3.16942 3.29647 3.34209 3.63663 3.69572 3.81014 4.02059 4.13705 4.25989 4.40463 4.49460 4.56717 4.69520 4.74922 4.86109 4.86454 4.87313 4.96236 5.02451 5.04476 5.21579 5.29014 5.44840 5.51458 5.76549 6.11216 6.15363 6.61301 6.73976 6.81536 7.48559 8.09777 8.98349 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.020462 B = 0.003237 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.090853 B = 8647.657847 C = 9019.263859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.569 5.569 3 C 0.562 3.438 4 O -0.549 6.549 5 C 0.175 3.825 6 N -0.486 5.486 7 C 0.300 3.700 8 N -0.483 5.483 9 C 0.062 3.938 10 S 0.209 5.791 11 C -0.170 4.170 12 C -0.121 4.121 13 C -0.146 4.146 14 C 0.132 3.868 15 H 0.109 0.891 16 C -0.126 4.126 17 C 0.117 3.883 18 N -0.621 5.621 19 C -0.231 4.231 20 H 0.061 0.939 21 C -0.029 4.029 22 N -0.956 5.956 23 Si 0.953 3.047 24 H -0.284 1.284 25 H -0.308 1.308 26 H -0.262 1.262 27 C 0.109 3.891 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.248 0.752 32 H 0.218 0.782 33 H 0.161 0.839 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.263 0.737 39 H 0.021 0.979 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.348 25.135 -10.823 27.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.299 5.299 3 C 0.348 3.652 4 O -0.427 6.427 5 C 0.020 3.980 6 N -0.204 5.204 7 C 0.010 3.990 8 N -0.199 5.199 9 C -0.192 4.192 10 S 0.468 5.532 11 C -0.304 4.304 12 C -0.150 4.150 13 C -0.162 4.162 14 C 0.028 3.972 15 H 0.127 0.873 16 C -0.165 4.165 17 C -0.006 4.006 18 N -0.349 5.349 19 C -0.360 4.360 20 H 0.079 0.921 21 C -0.224 4.224 22 N -0.602 5.602 23 Si 0.784 3.216 24 H -0.212 1.212 25 H -0.236 1.236 26 H -0.187 1.187 27 C -0.016 4.016 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.130 0.870 31 H 0.264 0.736 32 H 0.234 0.766 33 H 0.178 0.822 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.760 26.532 -10.596 28.816 hybrid contribution 1.578 -2.138 0.631 2.732 sum 5.338 24.393 -9.964 26.885 Atomic orbital electron populations 1.22816 0.76576 1.04707 1.03885 1.47775 1.09032 1.04221 1.68896 1.17953 0.86428 0.83115 0.77705 1.90707 1.13540 1.86817 1.51593 1.21454 0.90287 0.92360 0.93924 1.68753 1.06451 1.31079 1.14083 1.25908 1.02805 0.80707 0.89589 1.67985 1.07850 1.30564 1.13547 1.24571 0.94919 0.98762 1.00955 1.84214 0.92039 1.02475 1.74472 1.25951 1.04585 0.95632 1.04199 1.21022 0.92989 0.98354 1.02628 1.20804 0.96456 0.93847 1.05081 1.22042 0.97369 0.82340 0.95474 0.87274 1.23052 0.98465 0.98358 0.96597 1.22169 0.96412 0.98896 0.83154 1.44776 1.45341 1.37109 1.07688 1.18527 0.94961 1.13318 1.09163 0.92119 1.25869 1.01493 0.97432 0.97605 1.69881 1.36805 1.39477 1.14085 0.85809 0.82611 0.75474 0.77661 1.21175 1.23648 1.18699 1.22026 0.92052 0.91349 0.96165 0.90605 0.91202 0.87015 0.73612 0.76575 0.82180 0.88063 0.89525 0.93162 0.92575 0.92788 0.96153 0.95559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.69 7.72 127.77 0.99 2.68 16 2 N -0.57 -17.54 2.82 -819.11 -2.31 -19.85 16 3 C 0.56 17.31 7.66 86.86 0.67 17.98 16 4 O -0.55 -18.55 13.99 -3.78 -0.05 -18.60 16 5 C 0.18 4.72 6.72 42.52 0.29 5.01 16 6 N -0.49 -11.24 6.13 -188.05 -1.15 -12.39 16 7 C 0.30 5.64 12.25 180.99 2.22 7.86 16 8 N -0.48 -10.40 10.45 -195.91 -2.05 -12.45 16 9 C 0.06 1.36 7.70 85.06 0.66 2.01 16 10 S 0.21 3.06 23.23 -56.49 -1.31 1.74 16 11 C -0.17 -2.29 11.03 66.83 0.74 -1.55 16 12 C -0.12 -2.49 9.64 22.93 0.22 -2.27 16 13 C -0.15 -3.60 6.02 -20.16 -0.12 -3.72 16 14 C 0.13 4.46 3.58 46.18 0.17 4.62 16 15 H 0.11 3.69 6.99 -2.39 -0.02 3.68 16 16 C -0.13 -3.73 6.53 31.99 0.21 -3.52 16 17 C 0.12 4.19 6.34 86.86 0.55 4.74 16 18 N -0.62 -28.74 2.65 -691.99 -1.83 -30.58 16 19 C -0.23 -13.01 10.58 84.03 0.89 -12.12 16 20 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 21 C -0.03 -1.69 5.48 84.86 0.46 -1.22 16 22 N -0.96 -60.29 13.97 21.65 0.30 -59.99 16 23 Si 0.95 48.07 24.41 68.60 1.67 49.74 16 24 H -0.28 -14.06 6.96 99.48 0.69 -13.36 16 25 H -0.31 -15.59 7.11 99.48 0.71 -14.89 16 26 H -0.26 -12.47 6.86 99.48 0.68 -11.78 16 27 C 0.11 4.70 4.79 86.73 0.42 5.11 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.07 2.28 4.75 -2.39 -0.01 2.27 16 30 H 0.11 2.94 5.08 -5.69 -0.03 2.91 16 31 H 0.25 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.22 1.21 8.06 -2.91 -0.02 1.19 16 33 H 0.16 3.64 6.50 -2.91 -0.02 3.62 16 34 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 35 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 1.83 5.54 -2.39 -0.01 1.82 16 38 H 0.26 15.81 8.31 -92.71 -0.77 15.03 16 39 H 0.02 0.97 3.04 -2.38 -0.01 0.96 16 40 H 0.03 1.21 8.04 -2.39 -0.02 1.19 16 Total: -1.00 -72.27 329.62 2.66 -69.61 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 1.05 Total: 7.16 kcal Atomic # 6 Polarization: 17.26 SS G_CDS: 8.34 Total: 25.61 kcal Atomic # 7 Polarization: -128.22 SS G_CDS: -7.04 Total: -135.26 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.05 Total: -18.60 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 1.67 Total: 49.74 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -1.31 Total: 1.74 kcal Total: -72.27 2.66 -69.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033092525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.290 kcal (2) G-P(sol) polarization free energy of solvation -72.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds