Wall clock time and date at job start Tue Mar 31 2020 16:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34777 * 120.00136 * 2 1 4 4 O 1.21617 * 119.99935 * 185.32251 * 3 2 1 5 5 C 1.47381 * 119.99818 * 5.32175 * 3 2 1 6 6 C 1.47019 * 127.18821 * 35.42496 * 5 3 2 7 7 C 1.34185 * 105.94825 * 179.88988 * 6 5 3 8 8 O 1.34206 * 109.12579 * 0.37728 * 7 6 5 9 9 C 1.33650 * 110.90984 * 359.74766 * 8 7 6 10 10 C 1.50701 * 125.80255 * 180.02562 * 9 8 7 11 11 F 1.39900 * 109.46959 * 269.99881 * 10 9 8 12 12 F 1.39900 * 109.47151 * 29.99502 * 10 9 8 13 13 F 1.39899 * 109.47363 * 149.99886 * 10 9 8 14 14 C 1.46498 * 120.00042 * 179.97438 * 2 1 3 15 15 H 1.08999 * 110.88694 * 183.88065 * 14 2 1 16 16 C 1.55163 * 111.00391 * 60.00481 * 14 2 1 17 17 C 1.54331 * 102.94239 * 206.42343 * 16 14 2 18 18 N 1.47021 * 107.26770 * 22.19150 * 17 16 14 19 19 C 1.36941 * 125.64482 * 181.02571 * 18 17 16 20 20 H 1.08006 * 119.99981 * 175.10019 * 19 18 17 21 21 C 1.38812 * 119.99939 * 355.09305 * 19 18 17 22 22 N 1.31622 * 119.99606 * 155.45250 * 21 19 18 23 23 Si 1.86799 * 120.00284 * 335.18163 * 21 19 18 24 24 H 1.48492 * 109.47157 * 186.14179 * 23 21 19 25 25 H 1.48499 * 109.46699 * 306.14538 * 23 21 19 26 26 H 1.48504 * 109.46787 * 66.14061 * 23 21 19 27 27 C 1.47426 * 108.70719 * 1.28436 * 18 17 16 28 28 H 1.08995 * 109.47218 * 275.07448 * 1 2 3 29 29 H 1.08994 * 109.47349 * 35.07542 * 1 2 3 30 30 H 1.09002 * 109.47021 * 155.07599 * 1 2 3 31 31 H 1.07999 * 127.02888 * 0.02562 * 6 5 3 32 32 H 1.08007 * 125.43336 * 180.12311 * 7 6 5 33 33 H 1.08996 * 110.72230 * 88.05683 * 16 14 2 34 34 H 1.09005 * 110.87046 * 324.85448 * 16 14 2 35 35 H 1.08993 * 109.88089 * 262.77550 * 17 16 14 36 36 H 1.09003 * 110.01005 * 141.67608 * 17 16 14 37 37 H 0.96997 * 120.00194 * 354.72629 * 22 21 19 38 38 H 1.09005 * 110.36130 * 94.48726 * 27 18 17 39 39 H 1.09003 * 110.36948 * 216.80501 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3511 1.1694 -0.0977 5 6 1.4068 2.4408 0.1184 6 6 0.1951 2.6990 0.9100 7 6 -0.1051 3.9920 0.7135 8 8 0.7975 4.5311 -0.1206 9 6 1.7083 3.6248 -0.4883 10 6 2.8712 3.8694 -1.4151 11 9 2.4802 3.6087 -2.7328 12 9 3.2824 5.2021 -1.3057 13 9 3.9306 3.0245 -1.0672 14 6 2.1975 -1.2687 0.0006 15 1 3.2717 -1.0972 0.0694 16 6 1.8484 -2.1130 -1.2536 17 6 2.1064 -3.5589 -0.7797 18 7 2.0264 -3.5578 0.6884 19 6 2.2161 -4.6453 1.4987 20 1 2.2140 -4.5258 2.5722 21 6 2.4111 -5.9012 0.9406 22 7 3.0527 -6.8298 1.6176 23 14 1.7563 -6.2757 -0.7683 24 1 1.9610 -7.7147 -1.0725 25 1 0.3064 -5.9595 -0.8230 26 1 2.4809 -5.4505 -1.7679 27 6 1.7021 -2.1935 1.1432 28 1 -0.3633 0.0909 1.0236 29 1 -0.3634 0.8410 -0.5905 30 1 -0.3633 -0.9320 -0.4331 31 1 -0.3422 1.9929 1.5258 32 1 -0.9422 4.5142 1.1529 33 1 2.5044 -1.8570 -2.0856 34 1 0.8033 -1.9795 -1.5330 35 1 3.0981 -3.8815 -1.0966 36 1 1.3500 -4.2270 -1.1916 37 1 3.4556 -6.6149 2.4734 38 1 0.6263 -2.0858 1.2822 39 1 2.2296 -1.9670 2.0698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033109709.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:37 Heat of formation + Delta-G solvation = -107.772926 kcal Electronic energy + Delta-G solvation = -29493.606662 eV Core-core repulsion = 24797.527098 eV Total energy + Delta-G solvation = -4696.079564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.43595 -48.01084 -47.84715 -43.24745 -39.99823 -37.73052 -35.20816 -33.60714 -32.28019 -31.50009 -29.63257 -28.40095 -27.18917 -26.32784 -24.39095 -23.28455 -22.12732 -20.97160 -20.46323 -19.64271 -18.90692 -18.64765 -18.45218 -17.58163 -17.47349 -16.75603 -16.53973 -15.83201 -15.30334 -15.06866 -14.86167 -14.76723 -14.54107 -14.34192 -14.14569 -13.99692 -13.94254 -13.62232 -13.38009 -13.28086 -13.10872 -12.84656 -12.55169 -12.53861 -12.22846 -12.18047 -11.48123 -11.10424 -11.07810 -10.53754 -10.42416 -10.14725 -10.01644 -9.60491 -9.53834 -9.07447 -8.68910 -8.47745 -7.13108 -6.36045 -3.21490 0.51191 1.46020 1.50624 2.61438 2.66362 2.85008 3.32169 3.42301 3.50039 3.71147 3.88472 3.99450 4.06256 4.22597 4.62771 4.72758 4.81892 4.92828 4.96413 5.08996 5.12844 5.18090 5.34361 5.38684 5.46591 5.57780 5.61446 5.80271 5.83246 6.15425 6.20634 6.31814 6.34902 6.50356 6.65556 6.73584 7.25737 7.61623 7.96739 8.30512 9.00183 9.53681 10.18490 11.13729 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.023607 B = 0.003101 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.797539 B = 9028.055773 C = 9440.723820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.589 5.589 3 C 0.571 3.429 4 O -0.511 6.511 5 C -0.143 4.143 6 C -0.191 4.191 7 C 0.003 3.997 8 O -0.149 6.149 9 C -0.057 4.057 10 C 0.551 3.449 11 F -0.166 7.166 12 F -0.170 7.170 13 F -0.125 7.125 14 C 0.125 3.875 15 H 0.114 0.886 16 C -0.140 4.140 17 C 0.120 3.880 18 N -0.608 5.608 19 C -0.330 4.330 20 H 0.080 0.920 21 C -0.015 4.015 22 N -0.917 5.917 23 Si 1.052 2.948 24 H -0.300 1.300 25 H -0.297 1.297 26 H -0.281 1.281 27 C 0.133 3.867 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.174 0.826 32 H 0.223 0.777 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.029 0.971 37 H 0.263 0.737 38 H 0.027 0.973 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.950 25.262 -5.013 27.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.321 5.321 3 C 0.357 3.643 4 O -0.387 6.387 5 C -0.148 4.148 6 C -0.210 4.210 7 C -0.064 4.064 8 O -0.045 6.045 9 C -0.110 4.110 10 C 0.496 3.504 11 F -0.147 7.147 12 F -0.151 7.151 13 F -0.106 7.106 14 C 0.021 3.979 15 H 0.132 0.868 16 C -0.178 4.178 17 C -0.005 4.005 18 N -0.336 5.336 19 C -0.457 4.457 20 H 0.097 0.903 21 C -0.216 4.216 22 N -0.557 5.557 23 Si 0.885 3.115 24 H -0.227 1.227 25 H -0.226 1.226 26 H -0.208 1.208 27 C 0.005 3.995 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.191 0.809 32 H 0.239 0.761 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.044 0.956 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.406 24.246 -6.230 26.407 hybrid contribution -0.147 1.132 1.228 1.677 sum -8.553 25.378 -5.001 27.243 Atomic orbital electron populations 1.21965 0.79460 1.03584 1.01912 1.47560 1.07135 1.05405 1.72008 1.17253 0.86733 0.82509 0.77769 1.90911 1.12754 1.86564 1.48479 1.21472 0.98040 0.94048 1.01231 1.23156 0.96707 0.97128 1.03973 1.24292 0.94236 0.93912 0.93960 1.83754 1.31575 1.37826 1.51308 1.22087 0.95228 0.89182 1.04552 1.16845 0.80887 0.74954 0.77717 1.93274 1.90953 1.93776 1.36695 1.93247 1.91227 1.34809 1.95841 1.93501 1.56016 1.69565 1.91475 1.22564 0.97848 0.80761 0.96714 0.86847 1.22964 1.01571 0.95908 0.97401 1.21908 0.99284 0.93537 0.85737 1.44761 1.83457 1.04771 1.00617 1.20091 1.49080 0.86213 0.90313 0.90257 1.25735 0.98763 0.91749 1.05355 1.70904 1.32579 1.36325 1.15922 0.84153 0.76292 0.74566 0.76528 1.22739 1.22579 1.20809 1.21797 0.97305 0.85369 0.94993 0.92132 0.91239 0.89909 0.80877 0.76057 0.90823 0.91151 0.93378 0.95369 0.92672 0.95565 0.93309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 7.67 59.85 0.46 1.19 16 2 N -0.59 -8.13 2.91 -172.63 -0.50 -8.63 16 3 C 0.57 8.38 7.46 -12.54 -0.09 8.29 16 4 O -0.51 -9.21 13.02 5.26 0.07 -9.14 16 5 C -0.14 -1.65 5.33 -103.28 -0.55 -2.20 16 6 C -0.19 -1.43 9.11 -37.45 -0.34 -1.77 16 7 C 0.00 0.02 12.03 29.30 0.35 0.37 16 8 O -0.15 -1.35 10.50 7.68 0.08 -1.26 16 9 C -0.06 -0.64 6.70 -34.97 -0.23 -0.88 16 10 C 0.55 6.68 3.49 36.01 0.13 6.81 16 11 F -0.17 -1.98 17.30 2.25 0.04 -1.94 16 12 F -0.17 -1.93 17.29 2.25 0.04 -1.89 16 13 F -0.12 -1.83 13.54 2.25 0.03 -1.80 16 14 C 0.12 2.11 3.45 -65.66 -0.23 1.89 16 15 H 0.11 2.15 7.04 -51.93 -0.37 1.78 16 16 C -0.14 -2.33 6.49 -24.89 -0.16 -2.49 16 17 C 0.12 2.59 4.58 -3.06 -0.01 2.58 16 18 N -0.61 -14.71 3.34 -169.93 -0.57 -15.28 16 19 C -0.33 -9.40 10.48 -15.06 -0.16 -9.55 16 20 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 21 C -0.02 -0.45 5.46 -17.43 -0.10 -0.55 16 22 N -0.92 -28.70 13.70 55.49 0.76 -27.94 16 23 Si 1.05 26.18 24.78 -169.99 -4.21 21.96 16 24 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 25 H -0.30 -7.13 7.10 56.52 0.40 -6.72 16 26 H -0.28 -6.38 5.23 56.52 0.30 -6.08 16 27 C 0.13 2.59 6.79 -2.41 -0.02 2.57 16 28 H 0.06 0.50 6.98 -51.93 -0.36 0.14 16 29 H 0.07 0.56 6.57 -51.93 -0.34 0.22 16 30 H 0.08 0.85 6.37 -51.93 -0.33 0.52 16 31 H 0.17 0.93 6.58 -52.49 -0.35 0.58 16 32 H 0.22 0.21 8.06 -52.48 -0.42 -0.21 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.03 6.47 -51.93 -0.34 0.69 16 35 H 0.05 1.10 6.94 -51.93 -0.36 0.74 16 36 H 0.03 0.63 4.24 -51.93 -0.22 0.41 16 37 H 0.26 8.15 8.73 -40.82 -0.36 7.79 16 38 H 0.03 0.48 6.96 -51.93 -0.36 0.12 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 324.14 15.07 4.88 4.88 Total: -1.00 -34.51 324.14 -4.31 -38.82 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: -3.97 Total: -4.03 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -0.95 Total: 6.25 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -0.31 Total: -51.85 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.15 Total: -10.40 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.11 Total: -5.64 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -4.21 Total: 21.96 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.51 -4.31 -38.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033109709.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.954 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds