Wall clock time and date at job start Tue Mar 31 2020 16:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34777 * 120.00136 * 2 1 4 4 O 1.21617 * 119.99935 * 185.32251 * 3 2 1 5 5 C 1.47381 * 119.99818 * 5.32175 * 3 2 1 6 6 C 1.47019 * 127.18821 * 35.42496 * 5 3 2 7 7 C 1.34185 * 105.94825 * 179.88988 * 6 5 3 8 8 O 1.34206 * 109.12579 * 0.37728 * 7 6 5 9 9 C 1.33650 * 110.90984 * 359.74766 * 8 7 6 10 10 C 1.50701 * 125.80255 * 180.02562 * 9 8 7 11 11 F 1.39900 * 109.46959 * 269.99881 * 10 9 8 12 12 F 1.39900 * 109.47151 * 29.99502 * 10 9 8 13 13 F 1.39899 * 109.47363 * 149.99886 * 10 9 8 14 14 C 1.46498 * 120.00042 * 179.97438 * 2 1 3 15 15 H 1.08999 * 110.88694 * 183.88065 * 14 2 1 16 16 C 1.55163 * 111.00391 * 60.00481 * 14 2 1 17 17 C 1.54331 * 102.94239 * 206.42343 * 16 14 2 18 18 N 1.47021 * 107.26770 * 22.19150 * 17 16 14 19 19 C 1.36941 * 125.64482 * 181.02571 * 18 17 16 20 20 H 1.08006 * 119.99981 * 175.10019 * 19 18 17 21 21 C 1.38812 * 119.99939 * 355.09305 * 19 18 17 22 22 N 1.31622 * 119.99606 * 155.45250 * 21 19 18 23 23 Si 1.86799 * 120.00284 * 335.18163 * 21 19 18 24 24 H 1.48492 * 109.47157 * 186.14179 * 23 21 19 25 25 H 1.48499 * 109.46699 * 306.14538 * 23 21 19 26 26 H 1.48504 * 109.46787 * 66.14061 * 23 21 19 27 27 C 1.47426 * 108.70719 * 1.28436 * 18 17 16 28 28 H 1.08995 * 109.47218 * 275.07448 * 1 2 3 29 29 H 1.08994 * 109.47349 * 35.07542 * 1 2 3 30 30 H 1.09002 * 109.47021 * 155.07599 * 1 2 3 31 31 H 1.07999 * 127.02888 * 0.02562 * 6 5 3 32 32 H 1.08007 * 125.43336 * 180.12311 * 7 6 5 33 33 H 1.08996 * 110.72230 * 88.05683 * 16 14 2 34 34 H 1.09005 * 110.87046 * 324.85448 * 16 14 2 35 35 H 1.08993 * 109.88089 * 262.77550 * 17 16 14 36 36 H 1.09003 * 110.01005 * 141.67608 * 17 16 14 37 37 H 0.96997 * 120.00194 * 354.72629 * 22 21 19 38 38 H 1.09005 * 110.36130 * 94.48726 * 27 18 17 39 39 H 1.09003 * 110.36948 * 216.80501 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3511 1.1694 -0.0977 5 6 1.4068 2.4408 0.1184 6 6 0.1951 2.6990 0.9100 7 6 -0.1051 3.9920 0.7135 8 8 0.7975 4.5311 -0.1206 9 6 1.7083 3.6248 -0.4883 10 6 2.8712 3.8694 -1.4151 11 9 2.4802 3.6087 -2.7328 12 9 3.2824 5.2021 -1.3057 13 9 3.9306 3.0245 -1.0672 14 6 2.1975 -1.2687 0.0006 15 1 3.2717 -1.0972 0.0694 16 6 1.8484 -2.1130 -1.2536 17 6 2.1064 -3.5589 -0.7797 18 7 2.0264 -3.5578 0.6884 19 6 2.2161 -4.6453 1.4987 20 1 2.2140 -4.5258 2.5722 21 6 2.4111 -5.9012 0.9406 22 7 3.0527 -6.8298 1.6176 23 14 1.7563 -6.2757 -0.7683 24 1 1.9610 -7.7147 -1.0725 25 1 0.3064 -5.9595 -0.8230 26 1 2.4809 -5.4505 -1.7679 27 6 1.7021 -2.1935 1.1432 28 1 -0.3633 0.0909 1.0236 29 1 -0.3634 0.8410 -0.5905 30 1 -0.3633 -0.9320 -0.4331 31 1 -0.3422 1.9929 1.5258 32 1 -0.9422 4.5142 1.1529 33 1 2.5044 -1.8570 -2.0856 34 1 0.8033 -1.9795 -1.5330 35 1 3.0981 -3.8815 -1.0966 36 1 1.3500 -4.2270 -1.1916 37 1 3.4556 -6.6149 2.4734 38 1 0.6263 -2.0858 1.2822 39 1 2.2296 -1.9670 2.0698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033109709.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:36 Heat of formation + Delta-G solvation = -132.142658 kcal Electronic energy + Delta-G solvation = -29494.663413 eV Core-core repulsion = 24797.527098 eV Total energy + Delta-G solvation = -4697.136315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.36989 -48.91677 -48.83632 -43.90810 -41.17486 -39.23039 -36.51368 -34.72241 -33.98840 -32.17887 -31.36167 -29.90920 -28.09465 -27.28869 -25.97084 -24.47350 -22.91302 -22.61506 -21.65595 -20.75666 -19.82391 -19.62282 -19.51316 -19.41612 -18.49593 -17.73550 -17.36239 -17.06583 -16.43569 -16.34874 -16.06617 -15.71103 -15.65871 -15.52287 -15.27691 -15.13946 -15.02513 -14.97805 -14.59707 -14.37552 -14.05984 -14.03075 -13.96161 -13.86123 -13.32105 -13.17843 -13.06382 -13.04609 -12.46131 -12.26634 -11.77329 -11.55509 -11.31858 -11.04384 -10.98438 -10.63627 -10.21564 -9.77907 -9.16295 -8.68092 -5.44823 -0.29123 0.70954 0.94932 1.44039 1.51803 1.60639 1.74465 1.77431 1.88738 2.52128 2.57824 3.01960 3.04816 3.09446 3.24556 3.35352 3.56053 3.67390 3.75325 3.99114 4.06645 4.18079 4.23998 4.31505 4.39223 4.56918 4.67312 4.69858 4.76830 4.84850 4.93733 5.04098 5.12615 5.13766 5.36562 5.54258 5.62181 6.07074 6.19304 6.78771 6.88693 7.42821 8.06141 8.83567 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.023607 B = 0.003101 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.797539 B = 9028.055773 C = 9440.723820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.586 5.586 3 C 0.566 3.434 4 O -0.556 6.556 5 C -0.157 4.157 6 C -0.196 4.196 7 C 0.033 3.967 8 O -0.151 6.151 9 C -0.073 4.073 10 C 0.548 3.452 11 F -0.168 7.168 12 F -0.168 7.168 13 F -0.145 7.145 14 C 0.138 3.862 15 H 0.086 0.914 16 C -0.124 4.124 17 C 0.111 3.889 18 N -0.629 5.629 19 C -0.321 4.321 20 H 0.048 0.952 21 C -0.073 4.073 22 N -0.955 5.955 23 Si 1.093 2.907 24 H -0.312 1.312 25 H -0.277 1.277 26 H -0.247 1.247 27 C 0.134 3.866 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.198 0.802 32 H 0.276 0.724 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.030 0.970 36 H 0.034 0.966 37 H 0.248 0.752 38 H 0.053 0.947 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.319 27.844 -6.226 31.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.317 5.317 3 C 0.354 3.646 4 O -0.435 6.435 5 C -0.162 4.162 6 C -0.214 4.214 7 C -0.034 4.034 8 O -0.047 6.047 9 C -0.127 4.127 10 C 0.493 3.507 11 F -0.149 7.149 12 F -0.150 7.150 13 F -0.126 7.126 14 C 0.033 3.967 15 H 0.104 0.896 16 C -0.163 4.163 17 C -0.013 4.013 18 N -0.358 5.358 19 C -0.449 4.449 20 H 0.066 0.934 21 C -0.267 4.267 22 N -0.598 5.598 23 Si 0.920 3.080 24 H -0.241 1.241 25 H -0.203 1.203 26 H -0.172 1.172 27 C 0.008 3.992 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.215 0.785 32 H 0.291 0.709 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -11.820 26.900 -7.448 30.312 hybrid contribution 0.874 0.460 1.745 2.006 sum -10.946 27.361 -5.702 30.016 Atomic orbital electron populations 1.22305 0.76598 1.04807 1.03933 1.47541 1.08692 1.03871 1.71559 1.17738 0.86434 0.83642 0.76756 1.90891 1.14897 1.87307 1.50421 1.21351 0.99645 0.92412 1.02819 1.23423 0.95386 0.98501 1.04126 1.25363 0.93431 0.93441 0.91127 1.83787 1.31584 1.37522 1.51768 1.21767 0.95778 0.89700 1.05415 1.16977 0.81049 0.74655 0.78025 1.93260 1.90888 1.93794 1.36953 1.93241 1.91310 1.34559 1.95854 1.93458 1.57221 1.70270 1.91670 1.22058 0.96798 0.82019 0.95797 0.89623 1.22904 1.03932 0.92215 0.97239 1.22032 0.98354 0.96926 0.84022 1.44779 1.83806 1.05292 1.01880 1.19979 1.47389 0.87927 0.89636 0.93439 1.27053 0.98890 0.91971 1.08823 1.71015 1.35259 1.37450 1.16082 0.83674 0.77083 0.74112 0.73175 1.24092 1.20343 1.17232 1.21905 0.98462 0.83663 0.95206 0.89957 0.88789 0.89703 0.78518 0.70864 0.89343 0.87963 0.95250 0.94838 0.94269 0.92891 0.95154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.00 7.67 127.77 0.98 1.98 16 2 N -0.59 -14.80 2.91 -818.33 -2.38 -17.18 16 3 C 0.57 15.97 7.46 86.65 0.65 16.61 16 4 O -0.56 -20.40 13.02 -4.08 -0.05 -20.45 16 5 C -0.16 -3.26 5.33 -18.99 -0.10 -3.36 16 6 C -0.20 -2.04 9.11 23.65 0.22 -1.83 16 7 C 0.03 0.20 12.03 66.89 0.80 1.01 16 8 O -0.15 -2.21 10.50 4.57 0.05 -2.16 16 9 C -0.07 -1.52 6.70 25.26 0.17 -1.35 16 10 C 0.55 13.12 3.49 71.24 0.25 13.36 16 11 F -0.17 -3.93 17.30 44.97 0.78 -3.16 16 12 F -0.17 -3.76 17.29 44.97 0.78 -2.99 16 13 F -0.15 -4.39 13.54 44.97 0.61 -3.78 16 14 C 0.14 4.51 3.45 46.46 0.16 4.67 16 15 H 0.09 3.30 7.04 -2.39 -0.02 3.28 16 16 C -0.12 -3.80 6.49 31.79 0.21 -3.59 16 17 C 0.11 4.58 4.58 86.73 0.40 4.98 16 18 N -0.63 -30.24 3.34 -691.53 -2.31 -32.54 16 19 C -0.32 -18.71 10.48 84.03 0.88 -17.83 16 20 H 0.05 2.98 8.06 -2.91 -0.02 2.96 16 21 C -0.07 -4.40 5.46 84.86 0.46 -3.93 16 22 N -0.95 -61.94 13.70 21.65 0.30 -61.64 16 23 Si 1.09 52.48 24.78 68.60 1.70 54.18 16 24 H -0.31 -15.55 7.11 99.48 0.71 -14.84 16 25 H -0.28 -12.26 7.10 99.48 0.71 -11.55 16 26 H -0.25 -10.48 5.23 99.48 0.52 -9.96 16 27 C 0.13 5.10 6.79 86.93 0.59 5.69 16 28 H 0.08 0.95 6.98 -2.39 -0.02 0.93 16 29 H 0.09 1.04 6.57 -2.39 -0.02 1.03 16 30 H 0.08 1.32 6.37 -2.39 -0.02 1.31 16 31 H 0.20 1.02 6.58 -2.91 -0.02 1.01 16 32 H 0.28 -1.46 8.06 -2.91 -0.02 -1.48 16 33 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.10 2.50 6.47 -2.38 -0.02 2.49 16 35 H 0.03 1.32 6.94 -2.39 -0.02 1.30 16 36 H 0.03 1.38 4.24 -2.39 -0.01 1.37 16 37 H 0.25 16.22 8.73 -92.71 -0.81 15.41 16 38 H 0.05 1.78 6.96 -2.38 -0.02 1.76 16 39 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -80.63 324.14 6.02 -74.61 By element: Atomic # 1 Polarization: -2.19 SS G_CDS: 0.90 Total: -1.29 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 5.66 Total: 16.41 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -4.39 Total: -111.36 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.01 Total: -22.61 kcal Atomic # 9 Polarization: -12.09 SS G_CDS: 2.16 Total: -9.92 kcal Atomic # 14 Polarization: 52.48 SS G_CDS: 1.70 Total: 54.18 kcal Total: -80.63 6.02 -74.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033109709.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.534 kcal (2) G-P(sol) polarization free energy of solvation -80.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds