Wall clock time and date at job start Tue Mar 31 2020 16:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34772 * 120.00396 * 2 1 4 4 O 1.21609 * 119.99880 * 184.34518 * 3 2 1 5 5 C 1.47382 * 119.99780 * 4.61610 * 3 2 1 6 6 C 1.47020 * 127.19209 * 322.40998 * 5 3 2 7 7 C 1.34179 * 105.95168 * 179.97438 * 6 5 3 8 8 O 1.34215 * 109.12477 * 359.97438 * 7 6 5 9 9 C 1.33655 * 110.90921 * 359.75141 * 8 7 6 10 10 C 1.50700 * 125.80175 * 180.28367 * 9 8 7 11 11 F 1.39899 * 109.46784 * 270.14602 * 10 9 8 12 12 F 1.39895 * 109.47153 * 30.14435 * 10 9 8 13 13 F 1.39896 * 109.46967 * 150.14732 * 10 9 8 14 14 C 1.46500 * 119.99440 * 179.97438 * 2 1 3 15 15 H 1.09004 * 110.63878 * 181.69382 * 14 2 1 16 16 C 1.55157 * 110.72218 * 305.02470 * 14 2 1 17 17 C 1.54910 * 101.58252 * 153.86422 * 16 14 2 18 18 N 1.47426 * 104.83318 * 322.99571 * 17 16 14 19 19 C 1.36933 * 125.64622 * 204.16441 * 18 17 16 20 20 H 1.08000 * 119.99813 * 179.97438 * 19 18 17 21 21 C 1.38807 * 120.00124 * 359.95152 * 19 18 17 22 22 N 1.31621 * 120.00250 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 120.00034 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47173 * 90.00167 * 23 21 19 25 25 H 1.48494 * 109.47137 * 210.00323 * 23 21 19 26 26 H 1.48503 * 109.47093 * 329.99995 * 23 21 19 27 27 C 1.47015 * 108.70362 * 24.12339 * 18 17 16 28 28 H 1.09001 * 109.46610 * 84.76017 * 1 2 3 29 29 H 1.08991 * 109.47741 * 204.76631 * 1 2 3 30 30 H 1.09002 * 109.46787 * 324.77008 * 1 2 3 31 31 H 1.08000 * 127.02292 * 359.95054 * 6 5 3 32 32 H 1.08000 * 125.43534 * 180.02562 * 7 6 5 33 33 H 1.09001 * 111.00819 * 271.93924 * 16 14 2 34 34 H 1.08999 * 111.00282 * 35.79659 * 16 14 2 35 35 H 1.09002 * 110.37199 * 204.15234 * 17 16 14 36 36 H 1.09007 * 110.45620 * 81.87750 * 17 16 14 37 37 H 0.96999 * 119.99832 * 179.97438 * 22 21 19 38 38 H 1.09001 * 109.88332 * 239.52627 * 27 18 17 39 39 H 1.09002 * 109.88583 * 118.35776 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3525 1.1685 -0.0798 5 6 1.4057 2.4414 0.1027 6 6 0.1113 2.7739 -0.5101 7 6 -0.1575 4.0360 -0.1424 8 8 0.8427 4.4921 0.6276 9 6 1.7830 3.5566 0.7920 10 6 3.0468 3.7090 1.5985 11 9 4.0664 4.2039 0.7785 12 9 2.8223 4.6005 2.6530 13 9 3.4248 2.4641 2.1127 14 6 2.1974 -1.2688 0.0006 15 1 3.2726 -1.0918 0.0306 16 6 1.7506 -2.1601 1.1894 17 6 2.0635 -3.5781 0.6498 18 7 1.7322 -3.5174 -0.7855 19 6 1.3988 -4.5865 -1.5734 20 1 1.1716 -4.4369 -2.6186 21 6 1.3533 -5.8625 -1.0290 22 7 1.6301 -6.0448 0.2448 23 14 0.8991 -7.3211 -2.1041 24 1 2.1292 -7.8923 -2.7089 25 1 0.2278 -8.3557 -1.2771 26 1 -0.0208 -6.8748 -3.1811 27 6 1.8181 -2.1188 -1.2304 28 1 -0.3632 0.0939 -1.0234 29 1 -0.3634 -0.9330 0.4305 30 1 -0.3633 0.8395 0.5928 31 1 -0.4984 2.1332 -1.1300 32 1 -1.0384 4.5952 -0.4209 33 1 2.3371 -1.9436 2.0822 34 1 0.6848 -2.0435 1.3861 35 1 1.4427 -4.3205 1.1514 36 1 3.1192 -3.8130 0.7858 37 1 1.5979 -6.9365 0.6253 38 1 0.8540 -1.7944 -1.6220 39 1 2.5848 -2.0207 -1.9990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033109710.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:39 Heat of formation + Delta-G solvation = -116.635023 kcal Electronic energy + Delta-G solvation = -29423.401256 eV Core-core repulsion = 24726.937403 eV Total energy + Delta-G solvation = -4696.463854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.41272 -47.95252 -47.88103 -43.18139 -39.84915 -37.38874 -34.99857 -33.53276 -32.02514 -31.44318 -29.29481 -27.75488 -27.03051 -26.13052 -24.67941 -23.39567 -22.06537 -20.56559 -20.25006 -19.43807 -18.84700 -18.61014 -18.27312 -17.47799 -17.03178 -16.68765 -16.35212 -15.56753 -15.18731 -14.79142 -14.70959 -14.65720 -14.31650 -14.26539 -14.10640 -14.01750 -13.97953 -13.71253 -13.30608 -13.11393 -12.98392 -12.61279 -12.38627 -12.09891 -11.87819 -11.58007 -11.10169 -10.91144 -10.84015 -10.56269 -10.28076 -10.14030 -9.93902 -9.86559 -9.60049 -9.52489 -8.69409 -8.46571 -6.88811 -5.69156 -3.11701 0.58868 1.51000 1.58189 2.67337 2.74651 3.01593 3.36542 3.38051 3.43100 3.44794 3.93437 4.02145 4.16073 4.30953 4.46614 4.78885 4.91084 5.11875 5.16852 5.30620 5.38977 5.48467 5.54167 5.63249 5.67735 5.71246 5.86987 6.15478 6.26056 6.32888 6.49565 6.52611 6.64598 6.89225 7.40081 7.47810 7.58260 7.80068 8.08512 8.30927 9.17388 9.77946 10.41849 11.34589 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.025741 B = 0.002906 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.516018 B = 9631.796800 C =10160.867206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.585 5.585 3 C 0.574 3.426 4 O -0.523 6.523 5 C -0.140 4.140 6 C -0.192 4.192 7 C 0.003 3.997 8 O -0.150 6.150 9 C -0.060 4.060 10 C 0.561 3.439 11 F -0.158 7.158 12 F -0.170 7.170 13 F -0.144 7.144 14 C 0.126 3.874 15 H 0.106 0.894 16 C -0.153 4.153 17 C 0.153 3.847 18 N -0.602 5.602 19 C -0.223 4.223 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.916 3.084 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.131 3.869 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.174 0.826 32 H 0.223 0.777 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.016 0.984 37 H 0.253 0.747 38 H 0.028 0.972 39 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.552 22.117 2.643 22.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.317 5.317 3 C 0.361 3.639 4 O -0.400 6.400 5 C -0.146 4.146 6 C -0.211 4.211 7 C -0.064 4.064 8 O -0.045 6.045 9 C -0.113 4.113 10 C 0.506 3.494 11 F -0.139 7.139 12 F -0.151 7.151 13 F -0.125 7.125 14 C 0.023 3.977 15 H 0.124 0.876 16 C -0.192 4.192 17 C 0.028 3.972 18 N -0.329 5.329 19 C -0.352 4.352 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.746 3.254 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.207 1.207 27 C 0.004 3.996 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.192 0.808 32 H 0.239 0.761 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.034 0.966 37 H 0.064 0.936 38 H 0.045 0.955 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.885 22.142 2.759 22.842 hybrid contribution -0.254 -0.823 -0.672 1.093 sum -5.140 21.319 2.087 22.029 Atomic orbital electron populations 1.22039 0.79534 1.03926 1.01747 1.47659 1.07200 1.05508 1.71287 1.17206 0.86625 0.82480 0.77634 1.90855 1.12836 1.86817 1.49529 1.21501 0.96886 0.95049 1.01115 1.23187 0.95703 0.97061 1.05144 1.24286 0.92106 0.95411 0.94619 1.83748 1.26065 1.38609 1.56070 1.22012 0.93265 0.89726 1.06311 1.16637 0.80929 0.74873 0.76939 1.93290 1.60903 1.87441 1.72252 1.93247 1.94585 1.68704 1.58564 1.93339 1.91445 1.41019 1.86716 1.22361 0.97182 0.80736 0.97395 0.87587 1.23421 1.00724 0.98677 0.96373 1.21951 0.99049 0.91696 0.84498 1.44434 1.81046 1.00714 1.06696 1.19063 1.38977 0.84973 0.92147 0.90454 1.24790 1.01927 0.97394 0.96415 1.69777 1.55388 1.20868 1.10987 0.86060 0.77999 0.82282 0.79063 1.21579 1.21629 1.20703 1.21502 0.98008 0.86262 0.93837 0.92272 0.89541 0.91175 0.80818 0.76052 0.91854 0.91544 0.87198 0.96591 0.93645 0.95454 0.95591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 7.84 59.85 0.47 1.29 16 2 N -0.59 -8.98 2.88 -173.11 -0.50 -9.47 16 3 C 0.57 9.12 6.79 -12.54 -0.09 9.04 16 4 O -0.52 -10.03 14.72 5.27 0.08 -9.95 16 5 C -0.14 -1.76 5.42 -103.28 -0.56 -2.32 16 6 C -0.19 -1.59 8.82 -37.45 -0.33 -1.92 16 7 C 0.00 0.02 12.03 29.30 0.35 0.37 16 8 O -0.15 -1.44 10.51 7.65 0.08 -1.36 16 9 C -0.06 -0.72 6.69 -34.97 -0.23 -0.96 16 10 C 0.56 7.24 3.28 36.01 0.12 7.36 16 11 F -0.16 -2.13 17.30 2.25 0.04 -2.09 16 12 F -0.17 -1.98 17.29 2.25 0.04 -1.94 16 13 F -0.14 -2.13 14.81 2.25 0.03 -2.10 16 14 C 0.13 2.32 3.35 -66.09 -0.22 2.10 16 15 H 0.11 2.12 7.00 -51.93 -0.36 1.76 16 16 C -0.15 -2.86 6.59 -24.58 -0.16 -3.03 16 17 C 0.15 3.66 5.89 -2.53 -0.01 3.64 16 18 N -0.60 -15.19 3.39 -170.07 -0.58 -15.77 16 19 C -0.22 -6.13 10.27 -15.06 -0.15 -6.28 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 22 N -0.92 -26.39 10.09 55.49 0.56 -25.83 16 23 Si 0.92 21.72 29.55 -169.99 -5.02 16.70 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C 0.13 2.74 6.88 -3.07 -0.02 2.72 16 28 H 0.06 0.60 7.33 -51.93 -0.38 0.22 16 29 H 0.09 1.09 6.13 -51.93 -0.32 0.78 16 30 H 0.07 0.65 5.90 -51.93 -0.31 0.35 16 31 H 0.17 1.07 6.59 -52.49 -0.35 0.72 16 32 H 0.22 0.33 8.06 -52.49 -0.42 -0.10 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.07 1.17 6.14 -51.93 -0.32 0.85 16 35 H 0.11 2.92 5.87 -51.93 -0.30 2.61 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.03 0.55 7.06 -51.93 -0.37 0.18 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 331.85 15.07 5.00 5.00 Total: -1.00 -32.60 331.85 -5.15 -37.75 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -3.94 Total: -2.57 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: -0.94 Total: 11.65 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.52 Total: -51.07 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.16 Total: -11.31 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 0.11 Total: -6.13 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.60 -5.15 -37.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033109710.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.887 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds