Wall clock time and date at job start Tue Mar 31 2020 16:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34772 * 120.00396 * 2 1 4 4 O 1.21609 * 119.99880 * 184.34518 * 3 2 1 5 5 C 1.47382 * 119.99780 * 4.61610 * 3 2 1 6 6 C 1.47020 * 127.19209 * 322.40998 * 5 3 2 7 7 C 1.34179 * 105.95168 * 179.97438 * 6 5 3 8 8 O 1.34215 * 109.12477 * 359.97438 * 7 6 5 9 9 C 1.33655 * 110.90921 * 359.75141 * 8 7 6 10 10 C 1.50700 * 125.80175 * 180.28367 * 9 8 7 11 11 F 1.39899 * 109.46784 * 270.14602 * 10 9 8 12 12 F 1.39895 * 109.47153 * 30.14435 * 10 9 8 13 13 F 1.39896 * 109.46967 * 150.14732 * 10 9 8 14 14 C 1.46500 * 119.99440 * 179.97438 * 2 1 3 15 15 H 1.09004 * 110.63878 * 181.69382 * 14 2 1 16 16 C 1.55157 * 110.72218 * 305.02470 * 14 2 1 17 17 C 1.54910 * 101.58252 * 153.86422 * 16 14 2 18 18 N 1.47426 * 104.83318 * 322.99571 * 17 16 14 19 19 C 1.36933 * 125.64622 * 204.16441 * 18 17 16 20 20 H 1.08000 * 119.99813 * 179.97438 * 19 18 17 21 21 C 1.38807 * 120.00124 * 359.95152 * 19 18 17 22 22 N 1.31621 * 120.00250 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 120.00034 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47173 * 90.00167 * 23 21 19 25 25 H 1.48494 * 109.47137 * 210.00323 * 23 21 19 26 26 H 1.48503 * 109.47093 * 329.99995 * 23 21 19 27 27 C 1.47015 * 108.70362 * 24.12339 * 18 17 16 28 28 H 1.09001 * 109.46610 * 84.76017 * 1 2 3 29 29 H 1.08991 * 109.47741 * 204.76631 * 1 2 3 30 30 H 1.09002 * 109.46787 * 324.77008 * 1 2 3 31 31 H 1.08000 * 127.02292 * 359.95054 * 6 5 3 32 32 H 1.08000 * 125.43534 * 180.02562 * 7 6 5 33 33 H 1.09001 * 111.00819 * 271.93924 * 16 14 2 34 34 H 1.08999 * 111.00282 * 35.79659 * 16 14 2 35 35 H 1.09002 * 110.37199 * 204.15234 * 17 16 14 36 36 H 1.09007 * 110.45620 * 81.87750 * 17 16 14 37 37 H 0.96999 * 119.99832 * 179.97438 * 22 21 19 38 38 H 1.09001 * 109.88332 * 239.52627 * 27 18 17 39 39 H 1.09002 * 109.88583 * 118.35776 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3525 1.1685 -0.0798 5 6 1.4057 2.4414 0.1027 6 6 0.1113 2.7739 -0.5101 7 6 -0.1575 4.0360 -0.1424 8 8 0.8427 4.4921 0.6276 9 6 1.7830 3.5566 0.7920 10 6 3.0468 3.7090 1.5985 11 9 4.0664 4.2039 0.7785 12 9 2.8223 4.6005 2.6530 13 9 3.4248 2.4641 2.1127 14 6 2.1974 -1.2688 0.0006 15 1 3.2726 -1.0918 0.0306 16 6 1.7506 -2.1601 1.1894 17 6 2.0635 -3.5781 0.6498 18 7 1.7322 -3.5174 -0.7855 19 6 1.3988 -4.5865 -1.5734 20 1 1.1716 -4.4369 -2.6186 21 6 1.3533 -5.8625 -1.0290 22 7 1.6301 -6.0448 0.2448 23 14 0.8991 -7.3211 -2.1041 24 1 2.1292 -7.8923 -2.7089 25 1 0.2278 -8.3557 -1.2771 26 1 -0.0208 -6.8748 -3.1811 27 6 1.8181 -2.1188 -1.2304 28 1 -0.3632 0.0939 -1.0234 29 1 -0.3634 -0.9330 0.4305 30 1 -0.3633 0.8395 0.5928 31 1 -0.4984 2.1332 -1.1300 32 1 -1.0384 4.5952 -0.4209 33 1 2.3371 -1.9436 2.0822 34 1 0.6848 -2.0435 1.3861 35 1 1.4427 -4.3205 1.1514 36 1 3.1192 -3.8130 0.7858 37 1 1.5979 -6.9365 0.6253 38 1 0.8540 -1.7944 -1.6220 39 1 2.5848 -2.0207 -1.9990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033109710.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:39 Heat of formation + Delta-G solvation = -137.429433 kcal Electronic energy + Delta-G solvation = -29424.302969 eV Core-core repulsion = 24726.937403 eV Total energy + Delta-G solvation = -4697.365567 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.41368 -48.94691 -48.91020 -43.90956 -41.13526 -38.99742 -36.42177 -34.62691 -33.70589 -32.19143 -31.12636 -29.33285 -28.08258 -27.26961 -26.41432 -24.52125 -22.89177 -22.13302 -21.64784 -20.69411 -19.84139 -19.59325 -19.32199 -18.96821 -18.49464 -17.65272 -17.34422 -16.77230 -16.51506 -16.29781 -15.90110 -15.76084 -15.69677 -15.45299 -15.29872 -15.05220 -15.02735 -14.86847 -14.53310 -14.28669 -14.03292 -13.95595 -13.73806 -13.47804 -13.31309 -13.01016 -12.98159 -12.71552 -12.43881 -12.18379 -12.00811 -11.83674 -11.41424 -11.34901 -11.01929 -10.75749 -10.21652 -9.74863 -8.92605 -7.77891 -5.23800 -0.28680 0.68845 0.96111 1.48524 1.50643 1.58401 1.60846 1.77212 1.91241 2.49413 2.50578 3.02439 3.06318 3.25761 3.32816 3.56752 3.69629 3.82207 3.90187 4.04357 4.18210 4.20288 4.28729 4.53643 4.58320 4.63004 4.70101 4.82932 4.90474 5.00616 5.04522 5.13488 5.44413 5.45274 5.56206 5.62127 5.76412 6.22855 6.27873 6.88397 7.08713 7.74566 8.38158 9.23954 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.025741 B = 0.002906 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.516018 B = 9631.796800 C =10160.867206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.584 5.584 3 C 0.571 3.429 4 O -0.567 6.567 5 C -0.158 4.158 6 C -0.198 4.198 7 C 0.035 3.965 8 O -0.150 6.150 9 C -0.075 4.075 10 C 0.557 3.443 11 F -0.167 7.167 12 F -0.164 7.164 13 F -0.161 7.161 14 C 0.141 3.859 15 H 0.085 0.915 16 C -0.133 4.133 17 C 0.157 3.843 18 N -0.621 5.621 19 C -0.240 4.240 20 H 0.082 0.918 21 C -0.063 4.063 22 N -0.948 5.948 23 Si 0.982 3.018 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.267 1.267 27 C 0.133 3.867 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.199 0.801 32 H 0.278 0.722 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.083 0.917 36 H -0.015 1.015 37 H 0.248 0.752 38 H 0.046 0.954 39 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.458 24.106 1.711 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.315 5.315 3 C 0.360 3.640 4 O -0.447 6.447 5 C -0.163 4.163 6 C -0.217 4.217 7 C -0.031 4.031 8 O -0.045 6.045 9 C -0.128 4.128 10 C 0.502 3.498 11 F -0.148 7.148 12 F -0.145 7.145 13 F -0.142 7.142 14 C 0.036 3.964 15 H 0.103 0.897 16 C -0.172 4.172 17 C 0.031 3.969 18 N -0.348 5.348 19 C -0.369 4.369 20 H 0.100 0.900 21 C -0.256 4.256 22 N -0.598 5.598 23 Si 0.810 3.190 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.191 1.191 27 C 0.007 3.993 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.216 0.784 32 H 0.294 0.706 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.003 0.997 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -7.825 24.173 1.819 25.473 hybrid contribution 0.632 -1.357 -0.407 1.551 sum -7.193 22.816 1.412 23.965 Atomic orbital electron populations 1.22328 0.76881 1.04722 1.03708 1.47634 1.08666 1.04124 1.71047 1.17693 0.86317 0.83568 0.76463 1.90828 1.14962 1.87557 1.51402 1.21359 0.98823 0.93386 1.02734 1.23461 0.94062 0.98363 1.05806 1.25393 0.91596 0.94849 0.91252 1.83786 1.26205 1.38033 1.56470 1.21689 0.93595 0.90360 1.07164 1.16788 0.81486 0.74313 0.77191 1.93264 1.61552 1.87474 1.72482 1.93249 1.94533 1.68374 1.58364 1.93298 1.91750 1.42142 1.87012 1.21876 0.96547 0.82036 0.95892 0.89698 1.23209 1.02098 0.95219 0.96686 1.21717 0.96536 0.94204 0.84406 1.44692 1.80904 1.02029 1.07169 1.19437 1.38720 0.86001 0.92738 0.89991 1.25629 1.02295 0.99961 0.97704 1.70019 1.56320 1.20952 1.12472 0.85030 0.77599 0.78732 0.77645 1.21789 1.21792 1.19120 1.21567 0.98411 0.84735 0.94602 0.90097 0.90441 0.88262 0.78388 0.70632 0.90567 0.89664 0.89872 0.99722 0.94192 0.93570 0.96852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.30 7.84 127.77 1.00 2.30 16 2 N -0.58 -17.15 2.88 -819.87 -2.36 -19.51 16 3 C 0.57 17.77 6.79 86.65 0.59 18.36 16 4 O -0.57 -22.30 14.72 -4.06 -0.06 -22.36 16 5 C -0.16 -3.63 5.42 -18.99 -0.10 -3.73 16 6 C -0.20 -2.40 8.82 23.65 0.21 -2.19 16 7 C 0.04 0.26 12.03 66.89 0.80 1.07 16 8 O -0.15 -2.37 10.51 4.44 0.05 -2.32 16 9 C -0.07 -1.68 6.69 25.26 0.17 -1.51 16 10 C 0.56 14.32 3.28 71.24 0.23 14.56 16 11 F -0.17 -4.58 17.30 44.97 0.78 -3.80 16 12 F -0.16 -3.74 17.29 44.97 0.78 -2.96 16 13 F -0.16 -4.89 14.81 44.97 0.67 -4.22 16 14 C 0.14 5.21 3.35 46.18 0.15 5.36 16 15 H 0.08 3.52 7.00 -2.38 -0.02 3.51 16 16 C -0.13 -4.99 6.59 31.99 0.21 -4.78 16 17 C 0.16 7.74 5.89 86.85 0.51 8.25 16 18 N -0.62 -31.87 3.39 -691.99 -2.35 -34.22 16 19 C -0.24 -13.30 10.27 84.03 0.86 -12.43 16 20 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 21 C -0.06 -3.53 5.49 84.86 0.47 -3.06 16 22 N -0.95 -55.71 10.09 21.65 0.22 -55.49 16 23 Si 0.98 44.87 29.55 68.60 2.03 46.90 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 27 C 0.13 5.58 6.88 86.73 0.60 6.17 16 28 H 0.08 1.30 7.33 -2.39 -0.02 1.28 16 29 H 0.08 1.74 6.13 -2.39 -0.01 1.72 16 30 H 0.10 1.44 5.90 -2.39 -0.01 1.43 16 31 H 0.20 1.34 6.59 -2.91 -0.02 1.32 16 32 H 0.28 -1.26 8.06 -2.91 -0.02 -1.29 16 33 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.08 2.89 6.14 -2.39 -0.01 2.87 16 35 H 0.08 4.58 5.87 -2.39 -0.01 4.57 16 36 H -0.02 -0.83 8.14 -2.38 -0.02 -0.85 16 37 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 38 H 0.05 1.77 7.06 -2.39 -0.02 1.75 16 39 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -74.85 331.85 6.57 -68.28 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: 1.12 Total: 1.35 kcal Atomic # 6 Polarization: 22.65 SS G_CDS: 5.71 Total: 28.36 kcal Atomic # 7 Polarization: -104.73 SS G_CDS: -4.49 Total: -109.22 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.01 Total: -24.68 kcal Atomic # 9 Polarization: -13.21 SS G_CDS: 2.22 Total: -10.99 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -74.85 6.57 -68.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033109710.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.149 kcal (2) G-P(sol) polarization free energy of solvation -74.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds