Wall clock time and date at job start Tue Mar 31 2020 16:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34770 * 120.00289 * 2 1 4 4 O 1.21507 * 120.00350 * 175.03621 * 3 2 1 5 5 C 1.48207 * 120.00038 * 355.03462 * 3 2 1 6 6 N 1.32978 * 120.61240 * 4.15673 * 5 3 2 7 7 C 1.31771 * 120.90622 * 179.78216 * 6 5 3 8 8 N 1.31186 * 122.64933 * 0.46920 * 7 6 5 9 9 C 1.34526 * 121.10548 * 359.78417 * 8 7 6 10 10 C 1.44796 * 130.27661 * 179.97438 * 9 8 7 11 11 C 1.32204 * 114.91395 * 180.02562 * 10 9 8 12 12 S 1.75369 * 111.44808 * 0.02562 * 11 10 9 13 13 C 1.40449 * 120.61833 * 184.43139 * 5 3 2 14 14 C 1.46507 * 119.99948 * 180.02562 * 2 1 3 15 15 H 1.08993 * 110.64044 * 181.68499 * 14 2 1 16 16 C 1.55163 * 110.71808 * 305.02499 * 14 2 1 17 17 C 1.54902 * 101.58078 * 153.86509 * 16 14 2 18 18 N 1.47427 * 104.83548 * 322.98607 * 17 16 14 19 19 C 1.36928 * 125.65237 * 204.16417 * 18 17 16 20 20 H 1.07999 * 120.00444 * 149.25610 * 19 18 17 21 21 C 1.38821 * 120.00129 * 329.25689 * 19 18 17 22 22 N 1.31614 * 120.00132 * 168.54364 * 21 19 18 23 23 Si 1.86797 * 119.99618 * 348.54803 * 21 19 18 24 24 H 1.48495 * 109.47432 * 84.12863 * 23 21 19 25 25 H 1.48506 * 109.47081 * 204.12787 * 23 21 19 26 26 H 1.48504 * 109.47302 * 324.12236 * 23 21 19 27 27 C 1.47026 * 108.69749 * 24.13348 * 18 17 16 28 28 H 1.09001 * 109.47246 * 276.13646 * 1 2 3 29 29 H 1.09004 * 109.47432 * 36.14220 * 1 2 3 30 30 H 1.09006 * 109.47595 * 156.14267 * 1 2 3 31 31 H 1.08005 * 118.67750 * 180.23333 * 7 6 5 32 32 H 1.08001 * 122.54006 * 359.97438 * 10 9 8 33 33 H 1.08000 * 124.27663 * 180.02562 * 11 10 9 34 34 H 1.09001 * 111.00223 * 271.93661 * 16 14 2 35 35 H 1.08999 * 111.00352 * 35.78941 * 16 14 2 36 36 H 1.09000 * 110.36822 * 204.15206 * 17 16 14 37 37 H 1.09000 * 110.46306 * 81.87643 * 17 16 14 38 38 H 0.97002 * 120.00230 * 180.02562 * 22 21 19 39 39 H 1.09006 * 109.87631 * 239.52248 * 27 18 17 40 40 H 1.09005 * 109.88474 * 118.35901 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 3.3505 1.1691 0.0910 5 6 1.4020 2.4482 -0.1111 6 7 0.0725 2.4655 -0.1286 7 6 -0.5885 3.6015 -0.2229 8 7 0.0120 4.7644 -0.3129 9 6 1.3542 4.8556 -0.3090 10 6 2.2137 6.0175 -0.3973 11 6 3.5092 5.7556 -0.3653 12 16 3.8121 4.0342 -0.2225 13 6 2.0951 3.6662 -0.2056 14 6 2.1974 -1.2688 -0.0006 15 1 3.2725 -1.0918 0.0295 16 6 1.7505 -2.1612 1.1875 17 6 2.0636 -3.5786 0.6467 18 7 1.7322 -3.5168 -0.7885 19 6 1.3988 -4.5852 -1.5773 20 1 0.7241 -4.4520 -2.4101 21 6 1.9280 -5.8397 -1.3067 22 7 1.4431 -6.9030 -1.9120 23 14 3.3283 -6.0185 -0.0834 24 1 2.7766 -6.0909 1.2934 25 1 4.0877 -7.2602 -0.3782 26 1 4.2340 -4.8467 -0.1928 27 6 1.8181 -2.1177 -1.2322 28 1 -0.3634 0.1099 1.0218 29 1 -0.3634 0.8299 -0.6061 30 1 -0.3634 -0.9399 -0.4157 31 1 -1.6682 3.5739 -0.2301 32 1 1.8259 7.0218 -0.4836 33 1 4.2831 6.5069 -0.4202 34 1 2.3372 -1.9453 2.0805 35 1 0.6848 -2.0446 1.3844 36 1 1.4428 -4.3214 1.1477 37 1 3.1192 -3.8137 0.7825 38 1 1.8127 -7.7797 -1.7227 39 1 0.8539 -1.7931 -1.6235 40 1 2.5847 -2.0190 -2.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033134928.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:16 Heat of formation + Delta-G solvation = 99.270378 kcal Electronic energy + Delta-G solvation = -25795.618301 eV Core-core repulsion = 22125.419171 eV Total energy + Delta-G solvation = -3670.199130 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.63360 -39.87058 -37.73256 -36.65356 -35.08363 -33.69859 -32.20427 -31.07632 -29.73972 -28.26448 -26.96415 -25.69421 -25.36685 -24.04925 -22.37731 -21.16955 -20.73601 -19.32522 -18.82737 -17.91393 -17.18100 -16.99393 -16.53154 -16.06108 -15.62991 -15.30435 -15.18687 -14.79374 -14.56596 -14.30076 -13.60684 -13.52953 -13.22814 -13.09108 -12.85108 -12.73778 -12.43989 -12.28392 -11.95886 -11.56740 -11.45565 -11.28655 -11.08459 -11.01760 -10.85875 -10.76902 -10.41408 -10.16028 -9.97602 -9.79036 -9.50485 -9.39825 -8.73926 -8.58245 -8.35538 -6.92908 -5.97609 -3.41512 -0.21015 0.16710 0.96210 1.53309 1.55354 2.56967 2.67516 3.33067 3.35485 3.39347 3.45587 3.48117 3.56151 3.92268 4.23245 4.50778 4.58119 4.67118 4.98988 5.03810 5.08960 5.27079 5.32359 5.35902 5.43878 5.47313 5.54655 5.67923 5.77000 5.87451 5.91993 6.14573 6.20662 6.30335 6.40252 6.51099 6.56726 6.69975 6.72901 7.27684 7.50491 7.79537 7.89664 8.30426 8.80130 9.64121 10.16038 11.18531 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.025237 B = 0.002921 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.216088 B = 9584.471706 C =10220.680753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.568 5.568 3 C 0.559 3.441 4 O -0.524 6.524 5 C 0.198 3.802 6 N -0.475 5.475 7 C 0.290 3.710 8 N -0.479 5.479 9 C 0.169 3.831 10 C -0.124 4.124 11 C -0.182 4.182 12 S 0.219 5.781 13 C -0.231 4.231 14 C 0.121 3.879 15 H 0.109 0.891 16 C -0.137 4.137 17 C 0.108 3.892 18 N -0.607 5.607 19 C -0.245 4.245 20 H 0.088 0.912 21 C 0.028 3.972 22 N -0.913 5.913 23 Si 0.894 3.106 24 H -0.284 1.284 25 H -0.302 1.302 26 H -0.271 1.271 27 C 0.127 3.873 28 H 0.056 0.944 29 H 0.115 0.885 30 H 0.076 0.924 31 H 0.209 0.791 32 H 0.159 0.841 33 H 0.182 0.818 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.031 0.969 38 H 0.265 0.735 39 H 0.040 0.960 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.150 26.932 5.638 27.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.298 5.298 3 C 0.343 3.657 4 O -0.400 6.400 5 C 0.038 3.962 6 N -0.193 5.193 7 C -0.001 4.001 8 N -0.193 5.193 9 C 0.023 3.977 10 C -0.154 4.154 11 C -0.320 4.320 12 S 0.482 5.518 13 C -0.352 4.352 14 C 0.018 3.982 15 H 0.127 0.873 16 C -0.176 4.176 17 C -0.017 4.017 18 N -0.335 5.335 19 C -0.372 4.372 20 H 0.106 0.894 21 C -0.172 4.172 22 N -0.556 5.556 23 Si 0.725 3.275 24 H -0.211 1.211 25 H -0.230 1.230 26 H -0.197 1.197 27 C 0.001 3.999 28 H 0.075 0.925 29 H 0.133 0.867 30 H 0.095 0.905 31 H 0.225 0.775 32 H 0.176 0.824 33 H 0.199 0.801 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.794 25.844 5.653 26.467 hybrid contribution 0.104 0.598 0.590 0.847 sum 0.898 26.442 6.244 27.184 Atomic orbital electron populations 1.22645 0.77753 1.05077 1.03100 1.47725 1.08350 1.04878 1.68828 1.17718 0.86558 0.82738 0.78663 1.90783 1.12620 1.86040 1.50531 1.21171 0.89677 0.92248 0.93072 1.69009 1.06649 1.29970 1.13670 1.25026 1.01507 0.81861 0.91687 1.68218 1.08750 1.29803 1.12500 1.20433 0.89946 0.91406 0.95954 1.20499 0.91143 0.98210 1.05572 1.25941 1.00143 1.02660 1.03242 1.85118 0.97859 0.95942 1.72869 1.24324 1.02145 0.98391 1.10368 1.22395 0.97412 0.81237 0.97153 0.87315 1.23084 1.01735 0.96130 0.96679 1.22076 0.98422 0.94684 0.86548 1.44611 1.82219 1.02686 1.03940 1.18592 1.22336 0.85123 1.11168 0.89418 1.25305 0.98023 0.95694 0.98163 1.69742 1.42914 0.98242 1.44673 0.86806 0.83668 0.76184 0.80837 1.21101 1.22995 1.19683 1.21656 0.98973 0.85551 0.93684 0.92523 0.86744 0.90519 0.77480 0.82390 0.80106 0.91271 0.90551 0.92100 0.95149 0.92556 0.94260 0.94502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.71 8.05 59.84 0.48 1.19 16 2 N -0.57 -8.50 2.88 -172.81 -0.50 -9.00 16 3 C 0.56 8.49 7.67 -12.17 -0.09 8.40 16 4 O -0.52 -8.94 14.60 5.36 0.08 -8.86 16 5 C 0.20 2.60 6.71 -82.44 -0.55 2.05 16 6 N -0.48 -5.36 6.13 -11.12 -0.07 -5.43 16 7 C 0.29 2.75 12.22 -92.69 -1.13 1.62 16 8 N -0.48 -5.16 10.49 -11.75 -0.12 -5.28 16 9 C 0.17 1.85 7.23 -83.24 -0.60 1.25 16 10 C -0.12 -0.98 10.39 -38.92 -0.40 -1.39 16 11 C -0.18 -1.24 11.03 28.81 0.32 -0.92 16 12 S 0.22 2.24 21.60 -107.50 -2.32 -0.09 16 13 C -0.23 -2.81 6.35 -37.89 -0.24 -3.05 16 14 C 0.12 2.08 3.35 -66.09 -0.22 1.86 16 15 H 0.11 1.97 7.00 -51.93 -0.36 1.61 16 16 C -0.14 -2.32 6.63 -24.58 -0.16 -2.48 16 17 C 0.11 2.31 4.78 -2.53 -0.01 2.30 16 18 N -0.61 -14.58 3.08 -170.07 -0.52 -15.11 16 19 C -0.24 -6.91 10.59 -15.06 -0.16 -7.07 16 20 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 21 C 0.03 0.80 5.49 -17.43 -0.10 0.71 16 22 N -0.91 -28.07 13.97 55.49 0.78 -27.30 16 23 Si 0.89 22.73 24.36 -169.99 -4.14 18.59 16 24 H -0.28 -6.93 6.87 56.52 0.39 -6.54 16 25 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 26 H -0.27 -6.79 6.36 56.52 0.36 -6.43 16 27 C 0.13 2.56 6.75 -3.06 -0.02 2.54 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.12 1.32 4.95 -57.05 -0.28 1.04 16 30 H 0.08 1.03 6.53 -51.93 -0.34 0.70 16 31 H 0.21 1.13 8.06 -52.48 -0.42 0.70 16 32 H 0.16 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.18 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.20 7.14 -51.93 -0.37 0.83 16 36 H 0.06 1.35 7.33 -51.93 -0.38 0.97 16 37 H 0.03 0.69 4.99 -51.93 -0.26 0.43 16 38 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 39 H 0.04 0.77 6.38 -51.93 -0.33 0.43 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 333.98 15.07 5.03 5.03 Total: -1.00 -33.45 333.98 -9.17 -42.62 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -4.48 Total: -2.18 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -2.90 Total: 6.99 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -0.44 Total: -62.11 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.08 Total: -8.86 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.14 Total: 18.59 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.32 Total: -0.09 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.45 -9.17 -42.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033134928.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.890 kcal (2) G-P(sol) polarization free energy of solvation -33.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds