Wall clock time and date at job start Tue Mar 31 2020 16:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34770 * 120.00289 * 2 1 4 4 O 1.21507 * 120.00350 * 175.03621 * 3 2 1 5 5 C 1.48207 * 120.00038 * 355.03462 * 3 2 1 6 6 N 1.32978 * 120.61240 * 4.15673 * 5 3 2 7 7 C 1.31771 * 120.90622 * 179.78216 * 6 5 3 8 8 N 1.31186 * 122.64933 * 0.46920 * 7 6 5 9 9 C 1.34526 * 121.10548 * 359.78417 * 8 7 6 10 10 C 1.44796 * 130.27661 * 179.97438 * 9 8 7 11 11 C 1.32204 * 114.91395 * 180.02562 * 10 9 8 12 12 S 1.75369 * 111.44808 * 0.02562 * 11 10 9 13 13 C 1.40449 * 120.61833 * 184.43139 * 5 3 2 14 14 C 1.46507 * 119.99948 * 180.02562 * 2 1 3 15 15 H 1.08993 * 110.64044 * 181.68499 * 14 2 1 16 16 C 1.55163 * 110.71808 * 305.02499 * 14 2 1 17 17 C 1.54902 * 101.58078 * 153.86509 * 16 14 2 18 18 N 1.47427 * 104.83548 * 322.98607 * 17 16 14 19 19 C 1.36928 * 125.65237 * 204.16417 * 18 17 16 20 20 H 1.07999 * 120.00444 * 149.25610 * 19 18 17 21 21 C 1.38821 * 120.00129 * 329.25689 * 19 18 17 22 22 N 1.31614 * 120.00132 * 168.54364 * 21 19 18 23 23 Si 1.86797 * 119.99618 * 348.54803 * 21 19 18 24 24 H 1.48495 * 109.47432 * 84.12863 * 23 21 19 25 25 H 1.48506 * 109.47081 * 204.12787 * 23 21 19 26 26 H 1.48504 * 109.47302 * 324.12236 * 23 21 19 27 27 C 1.47026 * 108.69749 * 24.13348 * 18 17 16 28 28 H 1.09001 * 109.47246 * 276.13646 * 1 2 3 29 29 H 1.09004 * 109.47432 * 36.14220 * 1 2 3 30 30 H 1.09006 * 109.47595 * 156.14267 * 1 2 3 31 31 H 1.08005 * 118.67750 * 180.23333 * 7 6 5 32 32 H 1.08001 * 122.54006 * 359.97438 * 10 9 8 33 33 H 1.08000 * 124.27663 * 180.02562 * 11 10 9 34 34 H 1.09001 * 111.00223 * 271.93661 * 16 14 2 35 35 H 1.08999 * 111.00352 * 35.78941 * 16 14 2 36 36 H 1.09000 * 110.36822 * 204.15206 * 17 16 14 37 37 H 1.09000 * 110.46306 * 81.87643 * 17 16 14 38 38 H 0.97002 * 120.00230 * 180.02562 * 22 21 19 39 39 H 1.09006 * 109.87631 * 239.52248 * 27 18 17 40 40 H 1.09005 * 109.88474 * 118.35901 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 3.3505 1.1691 0.0910 5 6 1.4020 2.4482 -0.1111 6 7 0.0725 2.4655 -0.1286 7 6 -0.5885 3.6015 -0.2229 8 7 0.0120 4.7644 -0.3129 9 6 1.3542 4.8556 -0.3090 10 6 2.2137 6.0175 -0.3973 11 6 3.5092 5.7556 -0.3653 12 16 3.8121 4.0342 -0.2225 13 6 2.0951 3.6662 -0.2056 14 6 2.1974 -1.2688 -0.0006 15 1 3.2725 -1.0918 0.0295 16 6 1.7505 -2.1612 1.1875 17 6 2.0636 -3.5786 0.6467 18 7 1.7322 -3.5168 -0.7885 19 6 1.3988 -4.5852 -1.5773 20 1 0.7241 -4.4520 -2.4101 21 6 1.9280 -5.8397 -1.3067 22 7 1.4431 -6.9030 -1.9120 23 14 3.3283 -6.0185 -0.0834 24 1 2.7766 -6.0909 1.2934 25 1 4.0877 -7.2602 -0.3782 26 1 4.2340 -4.8467 -0.1928 27 6 1.8181 -2.1177 -1.2322 28 1 -0.3634 0.1099 1.0218 29 1 -0.3634 0.8299 -0.6061 30 1 -0.3634 -0.9399 -0.4157 31 1 -1.6682 3.5739 -0.2301 32 1 1.8259 7.0218 -0.4836 33 1 4.2831 6.5069 -0.4202 34 1 2.3372 -1.9453 2.0805 35 1 0.6848 -2.0446 1.3844 36 1 1.4428 -4.3214 1.1477 37 1 3.1192 -3.8137 0.7825 38 1 1.8127 -7.7797 -1.7227 39 1 0.8539 -1.7931 -1.6235 40 1 2.5847 -2.0190 -2.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033134928.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:15 Heat of formation + Delta-G solvation = 77.740175 kcal Electronic energy + Delta-G solvation = -25796.551921 eV Core-core repulsion = 22125.419171 eV Total energy + Delta-G solvation = -3671.132750 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.49702 -41.04043 -39.24209 -37.39163 -36.41680 -34.74252 -34.09069 -31.83698 -31.49951 -29.82117 -28.03643 -26.99410 -26.11420 -25.65144 -23.24810 -22.70174 -22.05247 -20.61762 -19.63659 -19.02382 -18.90807 -17.94603 -17.73726 -17.29648 -17.06386 -16.50898 -16.18087 -15.79972 -15.64578 -15.44394 -15.25098 -14.96758 -14.47648 -14.30972 -13.91338 -13.89222 -13.78797 -13.53463 -13.29050 -13.10978 -12.97582 -12.58294 -12.51918 -12.27934 -12.08731 -12.06098 -11.80417 -11.75198 -11.53596 -11.35054 -10.87132 -10.49707 -10.32175 -9.76182 -9.15926 -8.94632 -8.21804 -5.63043 -1.04300 -0.62703 0.22057 0.85907 0.88120 1.29765 1.38124 1.46489 1.51189 1.58625 2.37913 2.54707 2.57659 2.77321 3.05860 3.07110 3.30146 3.40370 3.63089 3.71992 3.85832 4.05852 4.08581 4.23996 4.35788 4.44014 4.53085 4.74167 4.75442 4.77805 4.83067 4.86840 4.90224 4.98599 5.00800 5.11676 5.29504 5.43878 5.51535 5.73335 6.08417 6.11334 6.64183 6.71615 6.79898 7.46157 8.06179 8.98156 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.025237 B = 0.002921 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.216088 B = 9584.471706 C =10220.680753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.570 5.570 3 C 0.557 3.443 4 O -0.547 6.547 5 C 0.179 3.821 6 N -0.478 5.478 7 C 0.291 3.709 8 N -0.486 5.486 9 C 0.162 3.838 10 C -0.132 4.132 11 C -0.150 4.150 12 S 0.179 5.821 13 C -0.250 4.250 14 C 0.135 3.865 15 H 0.101 0.899 16 C -0.120 4.120 17 C 0.101 3.899 18 N -0.623 5.623 19 C -0.239 4.239 20 H 0.054 0.946 21 C -0.029 4.029 22 N -0.958 5.958 23 Si 0.955 3.045 24 H -0.265 1.265 25 H -0.307 1.307 26 H -0.266 1.266 27 C 0.127 3.873 28 H 0.072 0.928 29 H 0.126 0.874 30 H 0.065 0.935 31 H 0.247 0.753 32 H 0.187 0.813 33 H 0.222 0.778 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.027 0.973 38 H 0.265 0.735 39 H 0.046 0.954 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.079 30.199 7.303 31.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.299 5.299 3 C 0.343 3.657 4 O -0.425 6.425 5 C 0.021 3.979 6 N -0.196 5.196 7 C 0.000 4.000 8 N -0.200 5.200 9 C 0.015 3.985 10 C -0.161 4.161 11 C -0.288 4.288 12 S 0.442 5.558 13 C -0.371 4.371 14 C 0.031 3.969 15 H 0.119 0.881 16 C -0.159 4.159 17 C -0.024 4.024 18 N -0.351 5.351 19 C -0.367 4.367 20 H 0.072 0.928 21 C -0.224 4.224 22 N -0.604 5.604 23 Si 0.783 3.217 24 H -0.190 1.190 25 H -0.235 1.235 26 H -0.191 1.191 27 C 0.002 3.998 28 H 0.091 0.909 29 H 0.143 0.857 30 H 0.083 0.917 31 H 0.262 0.738 32 H 0.204 0.796 33 H 0.239 0.761 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.841 29.159 7.339 30.080 hybrid contribution 0.008 -0.247 -0.008 0.247 sum 0.849 28.912 7.331 29.839 Atomic orbital electron populations 1.22753 0.76225 1.04881 1.04263 1.47701 1.09116 1.04034 1.69087 1.18026 0.86432 0.83371 0.77864 1.90763 1.13747 1.86597 1.51385 1.20849 0.90499 0.91527 0.95041 1.68924 1.05849 1.30955 1.13866 1.25794 1.02913 0.81006 0.90238 1.68312 1.08749 1.30260 1.12705 1.21007 0.90257 0.92029 0.95196 1.20818 0.91030 0.98493 1.05807 1.26295 1.00762 1.00832 1.00923 1.85231 0.97614 0.99396 1.73594 1.24488 1.02970 0.98520 1.11128 1.22025 0.97262 0.82007 0.95623 0.88128 1.22997 1.03166 0.92638 0.97079 1.22161 0.97853 0.97441 0.84930 1.44671 1.82120 1.03072 1.05210 1.18484 1.21134 0.86590 1.10542 0.92819 1.25956 1.00435 0.95336 1.00661 1.69874 1.44606 0.98769 1.47149 0.85826 0.80508 0.75812 0.79514 1.19021 1.23509 1.19115 1.21702 0.98893 0.84221 0.95013 0.90946 0.85657 0.91654 0.73765 0.79625 0.76108 0.88613 0.89088 0.92941 0.95525 0.92607 0.93655 0.95828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.41 8.05 127.77 1.03 2.44 16 2 N -0.57 -16.41 2.88 -818.96 -2.36 -18.77 16 3 C 0.56 16.57 7.67 86.89 0.67 17.24 16 4 O -0.55 -18.61 14.60 -3.74 -0.05 -18.67 16 5 C 0.18 4.54 6.71 42.16 0.28 4.82 16 6 N -0.48 -9.92 6.13 -189.08 -1.16 -11.08 16 7 C 0.29 4.80 12.22 181.07 2.21 7.02 16 8 N -0.49 -9.33 10.49 -191.10 -2.00 -11.34 16 9 C 0.16 3.21 7.23 40.96 0.30 3.51 16 10 C -0.13 -1.69 10.39 22.92 0.24 -1.45 16 11 C -0.15 -1.58 11.03 66.80 0.74 -0.84 16 12 S 0.18 3.46 21.60 -56.49 -1.22 2.24 16 13 C -0.25 -5.80 6.35 23.36 0.15 -5.65 16 14 C 0.13 4.51 3.35 46.18 0.15 4.66 16 15 H 0.10 3.58 7.00 -2.39 -0.02 3.56 16 16 C -0.12 -3.78 6.63 31.99 0.21 -3.57 16 17 C 0.10 4.18 4.78 86.85 0.42 4.59 16 18 N -0.62 -30.08 3.08 -691.98 -2.13 -32.21 16 19 C -0.24 -13.87 10.59 84.04 0.89 -12.98 16 20 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 21 C -0.03 -1.69 5.49 84.87 0.47 -1.23 16 22 N -0.96 -60.70 13.97 21.65 0.30 -60.39 16 23 Si 0.96 47.30 24.36 68.60 1.67 48.97 16 24 H -0.26 -12.17 6.87 99.48 0.68 -11.49 16 25 H -0.31 -15.32 7.11 99.48 0.71 -14.61 16 26 H -0.27 -12.79 6.36 99.48 0.63 -12.16 16 27 C 0.13 5.15 6.75 86.73 0.59 5.73 16 28 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.13 2.69 4.95 -12.49 -0.06 2.63 16 30 H 0.06 1.68 6.53 -2.38 -0.02 1.67 16 31 H 0.25 1.83 8.06 -2.91 -0.02 1.80 16 32 H 0.19 1.32 8.06 -2.91 -0.02 1.29 16 33 H 0.22 0.43 8.06 -2.91 -0.02 0.40 16 34 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.09 2.62 7.14 -2.39 -0.02 2.61 16 36 H 0.05 2.26 7.33 -2.39 -0.02 2.24 16 37 H 0.03 1.15 4.99 -2.39 -0.01 1.14 16 38 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 39 H 0.05 1.78 6.38 -2.38 -0.02 1.76 16 40 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -74.90 333.98 2.32 -72.58 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 0.94 Total: 4.37 kcal Atomic # 6 Polarization: 15.96 SS G_CDS: 8.33 Total: 24.30 kcal Atomic # 7 Polarization: -126.44 SS G_CDS: -7.35 Total: -133.79 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.05 Total: -18.67 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.67 Total: 48.97 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -1.22 Total: 2.24 kcal Total: -74.90 2.32 -72.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033134928.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.321 kcal (2) G-P(sol) polarization free energy of solvation -74.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds