Wall clock time and date at job start Tue Mar 31 2020 16:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34780 * 120.00284 * 2 1 4 4 O 1.21501 * 120.00458 * 176.81085 * 3 2 1 5 5 C 1.48206 * 119.99711 * 356.81266 * 3 2 1 6 6 N 1.32980 * 120.61343 * 5.93270 * 5 3 2 7 7 C 1.31782 * 120.90600 * 179.76168 * 6 5 3 8 8 N 1.31181 * 122.64601 * 0.53917 * 7 6 5 9 9 C 1.34525 * 121.10684 * 359.72762 * 8 7 6 10 10 C 1.44793 * 130.26861 * 180.02562 * 9 8 7 11 11 C 1.32205 * 114.90944 * 180.02562 * 10 9 8 12 12 S 1.75370 * 111.45244 * 359.97438 * 11 10 9 13 13 C 1.40453 * 120.61699 * 186.21323 * 5 3 2 14 14 C 1.46504 * 120.00060 * 179.97438 * 2 1 3 15 15 H 1.08998 * 110.88485 * 183.88075 * 14 2 1 16 16 C 1.55161 * 111.00037 * 60.00362 * 14 2 1 17 17 C 1.54324 * 102.93955 * 206.42105 * 16 14 2 18 18 N 1.47026 * 107.27005 * 22.19435 * 17 16 14 19 19 C 1.36934 * 125.64640 * 181.02107 * 18 17 16 20 20 H 1.07998 * 119.99810 * 185.05647 * 19 18 17 21 21 C 1.38812 * 120.00210 * 5.05576 * 19 18 17 22 22 N 1.31614 * 119.99831 * 4.81525 * 21 19 18 23 23 Si 1.86800 * 120.00212 * 185.08834 * 21 19 18 24 24 H 1.48505 * 109.47079 * 264.72688 * 23 21 19 25 25 H 1.48502 * 109.46957 * 24.72011 * 23 21 19 26 26 H 1.48496 * 109.47534 * 144.72467 * 23 21 19 27 27 C 1.47426 * 108.70440 * 1.28375 * 18 17 16 28 28 H 1.08996 * 109.47118 * 276.06760 * 1 2 3 29 29 H 1.09003 * 109.47049 * 36.07196 * 1 2 3 30 30 H 1.09004 * 109.47245 * 156.07005 * 1 2 3 31 31 H 1.07998 * 118.67529 * 180.24337 * 7 6 5 32 32 H 1.08002 * 122.54996 * 359.97438 * 10 9 8 33 33 H 1.08002 * 124.27901 * 179.97438 * 11 10 9 34 34 H 1.08998 * 110.71882 * 88.06403 * 16 14 2 35 35 H 1.08999 * 110.87348 * 324.85283 * 16 14 2 36 36 H 1.08996 * 109.88410 * 262.77856 * 17 16 14 37 37 H 1.09004 * 110.01176 * 141.68034 * 17 16 14 38 38 H 0.97005 * 120.00278 * 180.27891 * 22 21 19 39 39 H 1.09003 * 110.36399 * 94.48044 * 27 18 17 40 40 H 1.09000 * 110.36294 * 216.80660 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3525 1.1680 0.0585 5 6 1.3996 2.4497 -0.0714 6 7 0.0710 2.4694 -0.0175 7 6 -0.5920 3.6068 -0.0758 8 7 0.0050 4.7684 -0.1988 9 6 1.3456 4.8570 -0.2672 10 6 2.2012 6.0174 -0.4014 11 6 3.4960 5.7531 -0.4394 12 16 3.8032 4.0313 -0.3120 13 6 2.0889 3.6663 -0.2030 14 6 2.1975 -1.2688 0.0006 15 1 3.2717 -1.0972 0.0694 16 6 1.8484 -2.1130 -1.2536 17 6 2.1064 -3.5588 -0.7797 18 7 2.0265 -3.5578 0.6884 19 6 2.2161 -4.6452 1.4987 20 1 2.0555 -4.5599 2.5632 21 6 2.6147 -5.8572 0.9518 22 7 2.9020 -5.9380 -0.3300 23 14 2.7361 -7.3752 2.0336 24 1 4.1355 -7.5379 2.5032 25 1 1.8359 -7.2217 3.2047 26 1 2.3334 -8.5728 1.2533 27 6 1.7020 -2.1935 1.1432 28 1 -0.3633 0.1086 1.0219 29 1 -0.3633 0.8307 -0.6051 30 1 -0.3634 -0.9394 -0.4169 31 1 -1.6704 3.5812 -0.0249 32 1 1.8113 7.0225 -0.4665 33 1 4.2673 6.5029 -0.5365 34 1 2.5044 -1.8570 -2.0856 35 1 0.8033 -1.9795 -1.5330 36 1 3.0981 -3.8814 -1.0967 37 1 1.3501 -4.2270 -1.1916 38 1 3.1767 -6.7859 -0.7131 39 1 0.6263 -2.0857 1.2821 40 1 2.2297 -1.9671 2.0698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033134931.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:18 Heat of formation + Delta-G solvation = 76.484977 kcal Electronic energy + Delta-G solvation = -25678.911642 eV Core-core repulsion = 22007.724463 eV Total energy + Delta-G solvation = -3671.187179 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.47469 -40.96373 -39.05169 -37.37356 -36.37517 -34.70145 -33.83664 -31.81696 -31.13969 -29.32794 -28.01795 -26.96601 -26.10391 -25.83137 -23.23567 -22.13215 -22.02184 -20.61992 -19.61927 -18.95581 -18.88554 -17.92614 -17.70530 -17.01726 -16.74833 -16.48978 -15.99861 -15.83889 -15.75078 -15.36149 -15.09523 -14.52629 -14.27604 -14.08075 -13.98501 -13.86026 -13.71505 -13.51674 -13.22959 -12.90397 -12.74975 -12.42888 -12.31105 -12.10826 -12.05817 -12.02602 -11.82908 -11.71329 -11.61984 -11.39671 -10.75044 -10.48724 -10.30253 -9.77282 -9.16025 -8.92788 -7.85591 -5.24848 -1.03078 -0.61525 0.22869 0.87195 0.89603 1.46035 1.47887 1.55487 1.57081 1.59318 2.48369 2.55242 2.60592 2.79134 3.08963 3.31557 3.41131 3.62949 3.76172 3.86318 3.95096 4.08108 4.14814 4.30457 4.53207 4.53672 4.62378 4.75985 4.78700 4.79818 4.91454 4.94066 4.99270 5.08315 5.29392 5.39408 5.44369 5.53322 5.57205 5.72664 6.14359 6.17914 6.67231 6.81731 7.06554 7.72200 8.36170 9.22947 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.026689 B = 0.002685 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.884905 B =10425.657899 C =10964.004395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.569 5.569 3 C 0.554 3.446 4 O -0.551 6.551 5 C 0.180 3.820 6 N -0.478 5.478 7 C 0.291 3.709 8 N -0.485 5.485 9 C 0.163 3.837 10 C -0.131 4.131 11 C -0.150 4.150 12 S 0.173 5.827 13 C -0.249 4.249 14 C 0.136 3.864 15 H 0.087 0.913 16 C -0.133 4.133 17 C 0.184 3.816 18 N -0.623 5.623 19 C -0.245 4.245 20 H 0.082 0.918 21 C -0.064 4.064 22 N -0.949 5.949 23 Si 0.981 3.019 24 H -0.287 1.287 25 H -0.268 1.268 26 H -0.292 1.292 27 C 0.134 3.866 28 H 0.066 0.934 29 H 0.123 0.877 30 H 0.070 0.930 31 H 0.248 0.752 32 H 0.188 0.812 33 H 0.222 0.778 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.026 0.974 37 H 0.008 0.992 38 H 0.248 0.752 39 H 0.044 0.956 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.504 27.151 -2.131 27.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.298 5.298 3 C 0.340 3.660 4 O -0.429 6.429 5 C 0.022 3.978 6 N -0.196 5.196 7 C 0.001 3.999 8 N -0.200 5.200 9 C 0.015 3.985 10 C -0.160 4.160 11 C -0.288 4.288 12 S 0.437 5.563 13 C -0.371 4.371 14 C 0.031 3.969 15 H 0.106 0.894 16 C -0.171 4.171 17 C 0.059 3.941 18 N -0.350 5.350 19 C -0.374 4.374 20 H 0.100 0.900 21 C -0.257 4.257 22 N -0.597 5.597 23 Si 0.808 3.192 24 H -0.215 1.215 25 H -0.192 1.192 26 H -0.218 1.218 27 C 0.008 3.992 28 H 0.085 0.915 29 H 0.140 0.860 30 H 0.089 0.911 31 H 0.264 0.736 32 H 0.205 0.795 33 H 0.239 0.761 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.044 0.956 37 H 0.027 0.973 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.512 26.117 -2.062 26.584 hybrid contribution -0.218 -0.641 0.388 0.781 sum -4.730 25.475 -1.673 25.965 Atomic orbital electron populations 1.22642 0.76087 1.04650 1.03981 1.47701 1.09203 1.04047 1.68886 1.18094 0.86493 0.83488 0.77949 1.90768 1.13840 1.86663 1.51647 1.20809 0.90542 0.91410 0.95070 1.68965 1.05643 1.31139 1.13830 1.25805 1.02906 0.80948 0.90266 1.68310 1.08754 1.30328 1.12559 1.21004 0.90261 0.91936 0.95265 1.20818 0.91043 0.98515 1.05661 1.26292 1.00778 1.00689 1.01033 1.85299 0.98043 0.99605 1.73400 1.24482 1.02884 0.98573 1.11129 1.22189 0.96584 0.81638 0.96460 0.89441 1.23047 1.02450 0.94898 0.96752 1.20943 0.98527 0.91540 0.83093 1.44653 1.83075 1.04504 1.02753 1.19433 1.38800 0.88265 0.90860 0.89986 1.25686 1.01327 1.00974 0.97694 1.70167 1.52411 1.24927 1.12239 0.85037 0.77686 0.78647 0.77786 1.21451 1.19215 1.21825 1.21881 0.98040 0.84239 0.95046 0.91522 0.85955 0.91097 0.73624 0.79517 0.76092 0.90630 0.89546 0.95608 0.97340 0.94243 0.93856 0.94666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.64 8.00 127.77 1.02 2.66 16 2 N -0.57 -17.77 2.91 -817.40 -2.38 -20.14 16 3 C 0.55 17.86 7.67 86.89 0.67 18.53 16 4 O -0.55 -20.67 14.62 -3.72 -0.05 -20.73 16 5 C 0.18 4.82 6.68 42.16 0.28 5.10 16 6 N -0.48 -10.28 6.18 -189.08 -1.17 -11.45 16 7 C 0.29 4.91 12.22 181.07 2.21 7.12 16 8 N -0.49 -9.52 10.49 -191.10 -2.00 -11.52 16 9 C 0.16 3.34 7.23 40.96 0.30 3.64 16 10 C -0.13 -1.76 10.39 22.92 0.24 -1.52 16 11 C -0.15 -1.72 11.03 66.80 0.74 -0.99 16 12 S 0.17 3.64 21.61 -56.49 -1.22 2.42 16 13 C -0.25 -6.10 6.35 23.36 0.15 -5.95 16 14 C 0.14 5.12 3.46 46.46 0.16 5.28 16 15 H 0.09 3.72 7.01 -2.39 -0.02 3.70 16 16 C -0.13 -5.00 6.49 31.78 0.21 -4.80 16 17 C 0.18 9.21 5.42 86.73 0.47 9.68 16 18 N -0.62 -32.63 3.39 -691.55 -2.35 -34.98 16 19 C -0.24 -13.92 10.27 84.03 0.86 -13.06 16 20 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 21 C -0.06 -3.65 5.47 84.86 0.46 -3.19 16 22 N -0.95 -57.45 10.39 21.65 0.22 -57.23 16 23 Si 0.98 46.10 29.56 68.60 2.03 48.12 16 24 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 26 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 27 C 0.13 5.67 6.79 86.93 0.59 6.26 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.12 2.59 5.14 -3.63 -0.02 2.57 16 30 H 0.07 1.72 6.36 -2.38 -0.02 1.71 16 31 H 0.25 1.84 8.06 -2.91 -0.02 1.82 16 32 H 0.19 1.41 8.06 -2.91 -0.02 1.38 16 33 H 0.22 0.62 8.06 -2.91 -0.02 0.60 16 34 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.09 2.86 6.48 -2.39 -0.02 2.84 16 36 H 0.03 1.46 6.98 -2.39 -0.02 1.45 16 37 H 0.01 0.46 7.88 -2.38 -0.02 0.44 16 38 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 39 H 0.04 1.70 6.94 -2.39 -0.02 1.68 16 40 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -73.97 339.47 2.52 -71.45 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: 1.08 Total: 5.28 kcal Atomic # 6 Polarization: 20.41 SS G_CDS: 8.36 Total: 28.77 kcal Atomic # 7 Polarization: -127.64 SS G_CDS: -7.67 Total: -135.32 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.05 Total: -20.73 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.22 Total: 2.42 kcal Total: -73.97 2.52 -71.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033134931.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.933 kcal (2) G-P(sol) polarization free energy of solvation -73.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds