Wall clock time and date at job start Tue Mar 31 2020 16:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34777 * 120.00624 * 2 1 4 4 O 1.21543 * 120.00072 * 179.10061 * 3 2 1 5 5 C 1.47819 * 119.99435 * 359.10297 * 3 2 1 6 6 N 1.28947 * 124.85222 * 188.89169 * 5 3 2 7 7 C 1.33213 * 118.15874 * 179.97438 * 6 5 3 8 8 C 1.41658 * 129.11735 * 180.02562 * 7 6 5 9 9 C 1.36502 * 118.87660 * 179.97438 * 8 7 6 10 10 C 1.38791 * 119.89997 * 359.97438 * 9 8 7 11 11 N 1.31391 * 120.95573 * 0.02562 * 10 9 8 12 12 C 1.33043 * 121.82043 * 0.02562 * 11 10 9 13 13 S 1.75854 * 124.85625 * 8.58975 * 5 3 2 14 14 C 1.46504 * 119.99564 * 180.02562 * 2 1 3 15 15 H 1.09003 * 110.64223 * 176.86065 * 14 2 1 16 16 C 1.55156 * 110.71899 * 299.99406 * 14 2 1 17 17 C 1.54912 * 101.57968 * 153.86625 * 16 14 2 18 18 N 1.47421 * 104.92841 * 322.94048 * 17 16 14 19 19 C 1.36940 * 125.64439 * 204.15421 * 18 17 16 20 20 H 1.08001 * 119.99758 * 180.02562 * 19 18 17 21 21 C 1.38810 * 120.00375 * 0.02562 * 19 18 17 22 22 N 1.31619 * 119.99663 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00080 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47377 * 60.00001 * 23 21 19 25 25 H 1.48497 * 109.47259 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47054 * 299.99717 * 23 21 19 27 27 C 1.47287 * 108.56123 * 24.15362 * 18 17 16 28 28 H 1.08997 * 109.47350 * 276.40403 * 1 2 3 29 29 H 1.09003 * 109.47096 * 36.40335 * 1 2 3 30 30 H 1.08998 * 109.47619 * 156.40194 * 1 2 3 31 31 H 1.07999 * 120.56151 * 359.93928 * 8 7 6 32 32 H 1.07999 * 120.04886 * 179.97438 * 9 8 7 33 33 H 1.08003 * 119.52436 * 179.97438 * 10 9 8 34 34 H 1.09007 * 111.00262 * 35.80116 * 16 14 2 35 35 H 1.08995 * 111.04667 * 271.96000 * 16 14 2 36 36 H 1.09002 * 110.36657 * 81.83338 * 17 16 14 37 37 H 1.09004 * 110.36760 * 204.04273 * 17 16 14 38 38 H 0.97006 * 119.99724 * 179.97438 * 22 21 19 39 39 H 1.08998 * 109.85569 * 239.50335 * 27 18 17 40 40 H 1.09000 * 109.87333 * 118.35926 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3543 1.1671 0.0165 5 6 1.4000 2.4472 -0.0200 6 7 1.9392 3.6068 -0.1854 7 6 1.1446 4.6760 -0.1811 8 6 1.4836 6.0421 -0.3404 9 6 0.4897 6.9769 -0.3007 10 6 -0.8261 6.5800 -0.1073 11 7 -1.1346 5.3113 0.0399 12 6 -0.2088 4.3563 0.0112 13 16 -0.3409 2.6058 0.1707 14 6 2.1974 -1.2688 -0.0006 15 1 3.2716 -1.0924 -0.0564 16 6 1.8435 -2.1075 1.2559 17 6 2.1169 -3.5478 0.7556 18 7 1.6770 -3.5510 -0.6515 19 6 1.2872 -4.6541 -1.3632 20 1 0.9813 -4.5513 -2.3939 21 6 1.2853 -5.9043 -0.7601 22 7 1.6576 -6.0294 0.4961 23 14 0.7543 -7.4090 -1.7313 24 1 1.6454 -7.5793 -2.9068 25 1 0.8405 -8.6126 -0.8657 26 1 -0.6459 -7.2314 -2.1930 27 6 1.7272 -2.1702 -1.1615 28 1 -0.3634 0.1146 1.0212 29 1 -0.3633 0.8271 -0.6099 30 1 -0.3634 -0.9417 -0.4114 31 1 2.5111 6.3391 -0.4902 32 1 0.7269 8.0238 -0.4197 33 1 -1.6077 7.3248 -0.0765 34 1 0.7955 -1.9808 1.5278 35 1 2.4952 -1.8540 2.0920 36 1 3.1807 -3.7766 0.8209 37 1 1.5387 -4.2671 1.3356 38 1 1.6559 -6.9031 0.9178 39 1 0.7356 -1.8614 -1.4924 40 1 2.4331 -2.1066 -1.9896 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033151166.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:42 Heat of formation + Delta-G solvation = 88.636526 kcal Electronic energy + Delta-G solvation = -25282.703058 eV Core-core repulsion = 21612.042809 eV Total energy + Delta-G solvation = -3670.660249 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.21145 -40.15783 -38.02157 -37.17197 -35.10015 -32.92244 -32.33587 -30.65824 -29.36375 -27.90571 -27.34333 -26.06626 -24.71466 -24.26768 -22.85172 -20.63319 -20.29458 -19.41416 -18.88798 -17.85524 -17.40424 -16.97384 -16.66475 -16.06843 -15.95758 -15.34976 -14.99795 -14.72524 -14.19842 -14.02989 -13.80191 -13.53592 -13.40833 -13.21568 -13.09318 -12.87028 -12.46065 -11.99963 -11.73956 -11.62928 -11.19138 -11.03943 -10.89357 -10.84147 -10.74520 -10.45953 -10.19205 -10.08189 -9.89834 -9.63899 -9.52839 -9.28945 -8.96056 -8.71801 -8.56481 -6.92428 -5.71430 -3.14477 -0.43510 0.57944 0.60305 1.20875 1.60315 2.44078 2.82592 3.28276 3.37484 3.42121 3.43232 3.60534 3.94605 4.12907 4.31400 4.40724 4.44191 4.74220 4.78741 5.11356 5.13377 5.29967 5.37229 5.38657 5.45018 5.52086 5.52776 5.58970 5.75083 5.91950 6.07051 6.19835 6.36691 6.47949 6.58903 6.73171 7.01444 7.20017 7.24045 7.43619 7.54905 7.77540 7.88149 8.28037 9.14488 9.74690 10.38150 11.32124 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.032232 B = 0.002477 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.485788 B =11301.050998 C =11681.999387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.584 5.584 3 C 0.588 3.412 4 O -0.494 6.494 5 C 0.072 3.928 6 N -0.400 5.400 7 C 0.026 3.974 8 C -0.008 4.008 9 C -0.170 4.170 10 C 0.143 3.857 11 N -0.447 5.447 12 C -0.004 4.004 13 S 0.175 5.825 14 C 0.128 3.872 15 H 0.110 0.890 16 C -0.152 4.152 17 C 0.152 3.848 18 N -0.602 5.602 19 C -0.225 4.225 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.916 3.084 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.127 3.873 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.172 0.828 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.017 0.983 37 H 0.112 0.888 38 H 0.254 0.746 39 H 0.031 0.969 40 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.876 24.214 0.863 24.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.317 5.317 3 C 0.369 3.631 4 O -0.368 6.368 5 C -0.214 4.214 6 N -0.114 5.114 7 C -0.100 4.100 8 C -0.036 4.036 9 C -0.193 4.193 10 C -0.029 4.029 11 N -0.157 5.157 12 C -0.250 4.250 13 S 0.431 5.569 14 C 0.026 3.974 15 H 0.128 0.872 16 C -0.191 4.191 17 C 0.027 3.973 18 N -0.328 5.328 19 C -0.353 4.353 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.747 3.253 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.211 1.211 27 C 0.001 3.999 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.132 0.868 31 H 0.167 0.833 32 H 0.168 0.832 33 H 0.189 0.811 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.035 0.965 37 H 0.129 0.871 38 H 0.065 0.935 39 H 0.049 0.951 40 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.312 22.896 1.120 23.777 hybrid contribution 0.769 0.605 -0.782 1.252 sum -5.542 23.501 0.339 24.148 Atomic orbital electron populations 1.22146 0.79823 1.04166 1.02969 1.47674 1.06985 1.05565 1.71506 1.16846 0.86543 0.81125 0.78563 1.90845 1.11990 1.85643 1.48276 1.27206 0.93269 0.96345 1.04582 1.65596 1.37313 0.97095 1.11445 1.19935 0.88990 0.94380 1.06719 1.21069 1.01245 0.88487 0.92832 1.21765 0.93676 1.01223 1.02647 1.23095 0.95890 0.91857 0.92106 1.67271 1.34974 1.00476 1.12946 1.25997 0.93049 1.02166 1.03753 1.85941 1.06807 0.93390 1.70773 1.22451 0.97110 0.79980 0.97890 0.87184 1.23424 1.01081 0.98868 0.95769 1.21973 0.98344 0.91173 0.85805 1.44479 1.77955 1.00945 1.09471 1.19008 1.37087 0.84571 0.94632 0.90431 1.24794 1.01575 0.97561 0.96527 1.69760 1.53617 1.22662 1.10931 0.86129 0.78386 0.82118 0.78701 1.21163 1.21539 1.21115 1.21591 0.98113 0.86360 0.93881 0.90761 0.91117 0.86788 0.83277 0.83194 0.81139 0.91511 0.91677 0.96524 0.87064 0.93538 0.95084 0.95199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.63 7.68 59.84 0.46 1.09 16 2 N -0.58 -8.70 2.89 -172.97 -0.50 -9.20 16 3 C 0.59 9.47 7.69 -12.34 -0.09 9.37 16 4 O -0.49 -9.60 16.43 5.33 0.09 -9.51 16 5 C 0.07 1.02 7.20 -14.84 -0.11 0.91 16 6 N -0.40 -5.96 10.46 -8.52 -0.09 -6.05 16 7 C 0.03 0.32 6.95 -85.16 -0.59 -0.27 16 8 C -0.01 -0.07 10.18 -38.90 -0.40 -0.47 16 9 C -0.17 -1.05 10.00 -40.00 -0.40 -1.45 16 10 C 0.14 1.04 11.18 -17.54 -0.20 0.84 16 11 N -0.45 -4.91 10.38 -11.60 -0.12 -5.03 16 12 C 0.00 -0.05 7.72 -16.22 -0.13 -0.18 16 13 S 0.18 1.98 18.15 -107.50 -1.95 0.03 16 14 C 0.13 2.24 3.36 -66.10 -0.22 2.02 16 15 H 0.11 2.06 7.00 -51.93 -0.36 1.70 16 16 C -0.15 -2.73 6.66 -24.58 -0.16 -2.89 16 17 C 0.15 3.52 5.89 -2.53 -0.01 3.51 16 18 N -0.60 -14.69 3.40 -169.86 -0.58 -15.27 16 19 C -0.22 -6.02 10.28 -15.06 -0.15 -6.18 16 20 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 21 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -25.99 10.09 55.49 0.56 -25.43 16 23 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C 0.13 2.53 6.78 -2.92 -0.02 2.51 16 28 H 0.07 0.74 7.80 -51.93 -0.41 0.33 16 29 H 0.07 0.73 4.50 -22.36 -0.10 0.63 16 30 H 0.11 1.39 6.19 -51.93 -0.32 1.07 16 31 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.15 0.37 8.06 -52.49 -0.42 -0.05 16 33 H 0.17 0.59 8.06 -52.48 -0.42 0.16 16 34 H 0.07 1.12 7.34 -51.93 -0.38 0.74 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.11 2.88 5.87 -51.93 -0.30 2.58 16 38 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.03 0.58 6.02 -51.93 -0.31 0.27 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 339.17 15.07 5.11 5.11 Total: -1.00 -33.23 339.17 -8.90 -42.13 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -4.27 Total: -1.70 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: -2.12 Total: 8.48 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: -0.73 Total: -60.98 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -1.95 Total: 0.03 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.23 -8.90 -42.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033151166.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.766 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds