Wall clock time and date at job start Tue Mar 31 2020 16:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34777 * 120.00624 * 2 1 4 4 O 1.21543 * 120.00072 * 179.10061 * 3 2 1 5 5 C 1.47819 * 119.99435 * 359.10297 * 3 2 1 6 6 N 1.28947 * 124.85222 * 188.89169 * 5 3 2 7 7 C 1.33213 * 118.15874 * 179.97438 * 6 5 3 8 8 C 1.41658 * 129.11735 * 180.02562 * 7 6 5 9 9 C 1.36502 * 118.87660 * 179.97438 * 8 7 6 10 10 C 1.38791 * 119.89997 * 359.97438 * 9 8 7 11 11 N 1.31391 * 120.95573 * 0.02562 * 10 9 8 12 12 C 1.33043 * 121.82043 * 0.02562 * 11 10 9 13 13 S 1.75854 * 124.85625 * 8.58975 * 5 3 2 14 14 C 1.46504 * 119.99564 * 180.02562 * 2 1 3 15 15 H 1.09003 * 110.64223 * 176.86065 * 14 2 1 16 16 C 1.55156 * 110.71899 * 299.99406 * 14 2 1 17 17 C 1.54912 * 101.57968 * 153.86625 * 16 14 2 18 18 N 1.47421 * 104.92841 * 322.94048 * 17 16 14 19 19 C 1.36940 * 125.64439 * 204.15421 * 18 17 16 20 20 H 1.08001 * 119.99758 * 180.02562 * 19 18 17 21 21 C 1.38810 * 120.00375 * 0.02562 * 19 18 17 22 22 N 1.31619 * 119.99663 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00080 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47377 * 60.00001 * 23 21 19 25 25 H 1.48497 * 109.47259 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47054 * 299.99717 * 23 21 19 27 27 C 1.47287 * 108.56123 * 24.15362 * 18 17 16 28 28 H 1.08997 * 109.47350 * 276.40403 * 1 2 3 29 29 H 1.09003 * 109.47096 * 36.40335 * 1 2 3 30 30 H 1.08998 * 109.47619 * 156.40194 * 1 2 3 31 31 H 1.07999 * 120.56151 * 359.93928 * 8 7 6 32 32 H 1.07999 * 120.04886 * 179.97438 * 9 8 7 33 33 H 1.08003 * 119.52436 * 179.97438 * 10 9 8 34 34 H 1.09007 * 111.00262 * 35.80116 * 16 14 2 35 35 H 1.08995 * 111.04667 * 271.96000 * 16 14 2 36 36 H 1.09002 * 110.36657 * 81.83338 * 17 16 14 37 37 H 1.09004 * 110.36760 * 204.04273 * 17 16 14 38 38 H 0.97006 * 119.99724 * 179.97438 * 22 21 19 39 39 H 1.08998 * 109.85569 * 239.50335 * 27 18 17 40 40 H 1.09000 * 109.87333 * 118.35926 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3543 1.1671 0.0165 5 6 1.4000 2.4472 -0.0200 6 7 1.9392 3.6068 -0.1854 7 6 1.1446 4.6760 -0.1811 8 6 1.4836 6.0421 -0.3404 9 6 0.4897 6.9769 -0.3007 10 6 -0.8261 6.5800 -0.1073 11 7 -1.1346 5.3113 0.0399 12 6 -0.2088 4.3563 0.0112 13 16 -0.3409 2.6058 0.1707 14 6 2.1974 -1.2688 -0.0006 15 1 3.2716 -1.0924 -0.0564 16 6 1.8435 -2.1075 1.2559 17 6 2.1169 -3.5478 0.7556 18 7 1.6770 -3.5510 -0.6515 19 6 1.2872 -4.6541 -1.3632 20 1 0.9813 -4.5513 -2.3939 21 6 1.2853 -5.9043 -0.7601 22 7 1.6576 -6.0294 0.4961 23 14 0.7543 -7.4090 -1.7313 24 1 1.6454 -7.5793 -2.9068 25 1 0.8405 -8.6126 -0.8657 26 1 -0.6459 -7.2314 -2.1930 27 6 1.7272 -2.1702 -1.1615 28 1 -0.3634 0.1146 1.0212 29 1 -0.3633 0.8271 -0.6099 30 1 -0.3634 -0.9417 -0.4114 31 1 2.5111 6.3391 -0.4902 32 1 0.7269 8.0238 -0.4197 33 1 -1.6077 7.3248 -0.0765 34 1 0.7955 -1.9808 1.5278 35 1 2.4952 -1.8540 2.0920 36 1 3.1807 -3.7766 0.8209 37 1 1.5387 -4.2671 1.3356 38 1 1.6559 -6.9031 0.9178 39 1 0.7356 -1.8614 -1.4924 40 1 2.4331 -2.1066 -1.9896 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033151166.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:41 Heat of formation + Delta-G solvation = 65.336179 kcal Electronic energy + Delta-G solvation = -25283.713437 eV Core-core repulsion = 21612.042809 eV Total energy + Delta-G solvation = -3671.670628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.04029 -41.36185 -39.25215 -38.37137 -36.55114 -34.17302 -33.58038 -31.68081 -30.99306 -29.40297 -28.42299 -27.35194 -26.16239 -25.24635 -23.79555 -22.12760 -21.81219 -20.58644 -19.91963 -18.98841 -18.74948 -18.30312 -17.56102 -17.18147 -17.06336 -16.65091 -16.06884 -15.99265 -15.85639 -15.41833 -14.81922 -14.59023 -14.53063 -14.26768 -14.15754 -13.83829 -13.71315 -13.64007 -13.39198 -12.98616 -12.67234 -12.62774 -12.54574 -12.23739 -12.05441 -11.80555 -11.76731 -11.58212 -11.40648 -11.14323 -10.73233 -10.36256 -10.18513 -9.94929 -9.59890 -8.90542 -7.76147 -5.21719 -1.29472 -0.28130 -0.08350 0.32926 0.70325 1.28059 1.50286 1.52701 1.59094 1.73733 2.50697 2.56015 2.66417 3.16632 3.34352 3.37596 3.55123 3.67300 3.80674 3.85451 3.86065 3.88472 4.18001 4.26756 4.33831 4.45990 4.49844 4.61521 4.66856 4.74109 4.84192 4.95339 4.97244 5.04018 5.31980 5.39832 5.47505 5.59087 5.78174 5.90794 6.20520 6.30340 6.53955 6.66670 7.10441 7.76006 8.39348 9.25310 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.032232 B = 0.002477 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.485788 B =11301.050998 C =11681.999387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.580 5.580 3 C 0.590 3.410 4 O -0.540 6.540 5 C 0.038 3.962 6 N -0.423 5.423 7 C -0.006 4.006 8 C -0.019 4.019 9 C -0.148 4.148 10 C 0.153 3.847 11 N -0.475 5.475 12 C -0.022 4.022 13 S 0.221 5.779 14 C 0.143 3.857 15 H 0.095 0.905 16 C -0.133 4.133 17 C 0.155 3.845 18 N -0.621 5.621 19 C -0.238 4.238 20 H 0.083 0.917 21 C -0.064 4.064 22 N -0.948 5.948 23 Si 0.981 3.019 24 H -0.282 1.282 25 H -0.295 1.295 26 H -0.274 1.274 27 C 0.127 3.873 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.164 0.836 32 H 0.198 0.802 33 H 0.215 0.785 34 H 0.085 0.915 35 H 0.080 0.920 36 H -0.013 1.013 37 H 0.084 0.916 38 H 0.248 0.752 39 H 0.052 0.948 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.111 27.467 0.446 28.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.311 5.311 3 C 0.374 3.626 4 O -0.416 6.416 5 C -0.246 4.246 6 N -0.139 5.139 7 C -0.132 4.132 8 C -0.048 4.048 9 C -0.170 4.170 10 C -0.018 4.018 11 N -0.186 5.186 12 C -0.266 4.266 13 S 0.477 5.523 14 C 0.040 3.960 15 H 0.113 0.887 16 C -0.172 4.172 17 C 0.030 3.970 18 N -0.348 5.348 19 C -0.367 4.367 20 H 0.101 0.899 21 C -0.256 4.256 22 N -0.597 5.597 23 Si 0.809 3.191 24 H -0.208 1.208 25 H -0.221 1.221 26 H -0.199 1.199 27 C 0.001 3.999 28 H 0.115 0.885 29 H 0.103 0.897 30 H 0.130 0.870 31 H 0.182 0.818 32 H 0.215 0.785 33 H 0.231 0.769 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.005 0.995 37 H 0.102 0.898 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -8.581 26.169 0.690 27.549 hybrid contribution 1.383 -0.114 -0.687 1.548 sum -7.199 26.056 0.004 27.032 Atomic orbital electron populations 1.22375 0.77558 1.04723 1.04797 1.47562 1.08197 1.04305 1.71078 1.17093 0.86148 0.81950 0.77451 1.90805 1.13956 1.86482 1.50384 1.26627 0.95133 0.95334 1.07477 1.65554 1.39048 0.97930 1.11382 1.20326 0.89124 0.95225 1.08490 1.21493 1.03007 0.87454 0.92829 1.22294 0.92393 1.02868 0.99460 1.23988 0.97679 0.91277 0.88886 1.67357 1.34898 1.01727 1.14604 1.26134 0.93339 1.02827 1.04339 1.85449 1.03452 0.93534 1.69893 1.22007 0.96628 0.80816 0.96577 0.88723 1.23219 1.02541 0.95257 0.96163 1.21740 0.95953 0.93802 0.85508 1.44724 1.77785 1.02186 1.10070 1.19382 1.36550 0.85623 0.95125 0.89933 1.25606 1.02232 1.00250 0.97532 1.70004 1.54790 1.22671 1.12248 0.85124 0.78363 0.78439 0.77205 1.20849 1.22087 1.19931 1.21682 0.98963 0.84815 0.94399 0.88496 0.89665 0.86999 0.81824 0.78512 0.76879 0.89665 0.90174 0.99478 0.89819 0.94205 0.93019 0.96073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.07 7.68 127.77 0.98 2.06 16 2 N -0.58 -17.11 2.89 -819.42 -2.36 -19.47 16 3 C 0.59 19.39 7.69 86.78 0.67 20.05 16 4 O -0.54 -21.87 16.43 -3.85 -0.06 -21.93 16 5 C 0.04 1.09 7.20 87.65 0.63 1.72 16 6 N -0.42 -12.73 10.46 -180.88 -1.89 -14.63 16 7 C -0.01 -0.14 6.95 40.30 0.28 0.14 16 8 C -0.02 -0.30 10.18 22.71 0.23 -0.07 16 9 C -0.15 -1.16 10.00 22.00 0.22 -0.94 16 10 C 0.15 1.55 11.18 84.89 0.95 2.50 16 11 N -0.47 -9.12 10.38 -190.60 -1.98 -11.10 16 12 C -0.02 -0.50 7.72 85.03 0.66 0.16 16 13 S 0.22 4.73 18.15 -56.49 -1.03 3.70 16 14 C 0.14 5.07 3.36 46.18 0.15 5.23 16 15 H 0.09 3.69 7.00 -2.39 -0.02 3.67 16 16 C -0.13 -4.76 6.66 31.99 0.21 -4.55 16 17 C 0.16 7.44 5.89 86.86 0.51 7.95 16 18 N -0.62 -30.94 3.40 -691.32 -2.35 -33.29 16 19 C -0.24 -12.93 10.28 84.03 0.86 -12.06 16 20 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 21 C -0.06 -3.50 5.49 84.86 0.47 -3.04 16 22 N -0.95 -55.05 10.09 21.65 0.22 -54.83 16 23 Si 0.98 44.58 29.55 68.60 2.03 46.61 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 C 0.13 5.11 6.78 86.68 0.59 5.70 16 28 H 0.10 1.70 7.80 -2.39 -0.02 1.68 16 29 H 0.09 1.63 4.50 -21.19 -0.10 1.53 16 30 H 0.11 2.53 6.19 -2.39 -0.01 2.51 16 31 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.20 -0.30 8.06 -2.91 -0.02 -0.32 16 33 H 0.21 0.20 8.06 -2.91 -0.02 0.17 16 34 H 0.08 2.76 7.34 -2.38 -0.02 2.74 16 35 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 36 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 37 H 0.08 4.51 5.87 -2.39 -0.01 4.50 16 38 H 0.25 14.07 8.31 -92.70 -0.77 13.30 16 39 H 0.05 1.88 6.02 -2.39 -0.01 1.87 16 40 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -76.32 339.17 0.99 -75.33 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: 1.01 Total: 4.76 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: 7.41 Total: 24.85 kcal Atomic # 7 Polarization: -124.95 SS G_CDS: -8.37 Total: -133.32 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.06 Total: -21.93 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: 4.73 SS G_CDS: -1.03 Total: 3.70 kcal Total: -76.32 0.99 -75.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033151166.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.663 kcal (2) G-P(sol) polarization free energy of solvation -76.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds