Wall clock time and date at job start Tue Mar 31 2020 16:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46502 * 120.00336 * 2 1 4 4 C 1.52997 * 109.46975 * 95.05444 * 3 2 1 5 5 H 1.09005 * 112.96109 * 70.50623 * 4 3 2 6 6 C 1.53943 * 113.77523 * 298.82539 * 4 3 2 7 7 C 1.53947 * 86.28950 * 222.09269 * 6 4 3 8 8 N 1.47580 * 113.76738 * 202.17695 * 4 3 2 9 9 C 1.36940 * 134.49837 * 318.94204 * 8 4 3 10 10 H 1.07994 * 119.99769 * 5.07752 * 9 8 4 11 11 C 1.38811 * 120.00120 * 185.08331 * 9 8 4 12 12 N 1.31615 * 119.99853 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00019 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46973 * 89.99668 * 13 11 9 15 15 H 1.48498 * 109.47052 * 209.99726 * 13 11 9 16 16 H 1.48500 * 109.46787 * 329.99881 * 13 11 9 17 17 C 1.34775 * 120.00030 * 179.97438 * 2 1 3 18 18 O 1.21521 * 120.00255 * 182.91636 * 17 2 1 19 19 C 1.48097 * 120.00043 * 2.92180 * 17 2 1 20 20 N 1.32702 * 120.59059 * 353.91707 * 19 17 2 21 21 C 1.31712 * 121.24824 * 179.97438 * 20 19 17 22 22 N 1.31536 * 122.33152 * 0.03006 * 21 20 19 23 23 C 1.33233 * 121.08196 * 359.96897 * 22 21 20 24 24 S 1.75733 * 131.40513 * 179.97438 * 23 22 21 25 25 C 1.75351 * 92.19680 * 180.02562 * 24 23 22 26 26 C 1.32143 * 111.48425 * 0.02562 * 25 24 23 27 27 C 1.40615 * 119.06366 * 359.75338 * 23 22 21 28 28 H 1.08996 * 109.46931 * 264.06392 * 1 2 3 29 29 H 1.08995 * 109.46810 * 144.05852 * 1 2 3 30 30 H 1.09002 * 109.46756 * 24.06629 * 1 2 3 31 31 H 1.08997 * 109.47297 * 215.05751 * 3 2 1 32 32 H 1.09008 * 109.46877 * 335.05804 * 3 2 1 33 33 H 1.08997 * 113.73703 * 336.43982 * 6 4 3 34 34 H 1.09000 * 113.74044 * 107.63723 * 6 4 3 35 35 H 1.09004 * 113.76525 * 137.90917 * 7 6 4 36 36 H 1.08999 * 113.76792 * 269.19053 * 7 6 4 37 37 H 0.97008 * 119.99638 * 180.02562 * 12 11 9 38 38 H 1.07997 * 118.83681 * 180.02562 * 21 20 19 39 39 H 1.08008 * 124.25983 * 180.02562 * 25 24 23 40 40 H 1.07997 * 122.56603 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5627 1.6468 1.4369 5 1 3.3309 1.0022 1.8641 6 6 1.3431 1.8504 2.3540 7 6 2.0912 3.0758 2.9095 8 7 2.8227 3.0872 1.6251 9 6 3.4774 4.0471 0.9004 10 1 3.8727 3.8103 -0.0763 11 6 3.6329 5.3244 1.4211 12 7 3.1507 5.6131 2.6113 13 14 4.5266 6.6336 0.4328 14 1 3.5513 7.3664 -0.4139 15 1 5.1914 7.5852 1.3589 16 1 5.5475 5.9897 -0.4323 17 6 2.1389 -1.1672 0.0005 18 8 3.3529 -1.1679 0.0541 19 6 1.3999 -2.4489 -0.0643 20 7 0.0745 -2.4682 -0.0021 21 6 -0.5959 -3.6005 -0.0591 22 7 0.0014 -4.7663 -0.1789 23 6 1.3289 -4.8550 -0.2496 24 16 2.3941 -6.2436 -0.4088 25 6 3.8260 -5.2315 -0.3982 26 6 3.5138 -3.9526 -0.2830 27 6 2.0958 -3.6775 -0.1997 28 1 -0.3633 -0.1063 1.0221 29 1 -0.3633 -0.8320 -0.6032 30 1 -0.3633 0.9384 -0.4191 31 1 3.1078 1.1627 -0.5903 32 1 1.5723 2.0493 -0.4334 33 1 0.4279 2.1009 1.8177 34 1 1.2037 1.0517 3.0825 35 1 1.4545 3.9473 3.0617 36 1 2.7203 2.8529 3.7714 37 1 3.2591 6.5058 2.9750 38 1 -1.6741 -3.5708 -0.0054 39 1 4.8360 -5.6061 -0.4760 40 1 4.2598 -3.1721 -0.2580 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085603140.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:15 Heat of formation + Delta-G solvation = 119.988014 kcal Electronic energy + Delta-G solvation = -25725.206825 eV Core-core repulsion = 22055.906079 eV Total energy + Delta-G solvation = -3669.300746 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -41.63161 -39.56732 -37.78377 -36.64573 -35.21962 -34.03318 -32.11721 -30.61860 -28.69858 -27.82956 -26.80742 -25.48109 -24.91706 -23.31721 -22.62957 -21.56368 -20.51897 -19.08846 -18.78953 -17.99370 -16.68528 -16.47184 -16.20506 -15.88317 -15.69996 -15.24999 -15.07270 -14.71255 -14.37892 -14.08623 -13.61104 -13.54914 -13.16717 -12.89361 -12.74263 -12.52983 -12.33442 -12.19590 -11.43764 -11.41606 -11.34981 -11.16262 -11.01068 -10.81073 -10.72860 -10.43656 -10.33501 -9.86758 -9.72227 -9.50727 -9.44264 -9.28825 -8.77889 -8.56739 -8.36953 -6.84324 -5.74492 -3.06097 -0.19518 0.24786 0.70969 1.43347 1.82827 2.59348 2.82938 3.40451 3.45780 3.45869 3.47686 3.60002 3.81764 4.07050 4.13202 4.48644 4.67144 4.75225 5.18660 5.24368 5.39211 5.47312 5.57050 5.59943 5.63692 5.79575 5.81821 5.85722 5.97434 6.15529 6.19379 6.24743 6.29919 6.44852 6.62536 6.72248 6.82181 7.27685 7.36496 7.45856 7.52278 7.60166 8.00426 8.07704 9.07362 9.73853 10.64272 11.43241 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.023619 B = 0.002719 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.212935 B =10293.547541 C =10904.067384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.575 5.575 3 C 0.116 3.884 4 C 0.129 3.871 5 H 0.049 0.951 6 C -0.158 4.158 7 C 0.165 3.835 8 N -0.601 5.601 9 C -0.223 4.223 10 H 0.079 0.921 11 C -0.007 4.007 12 N -0.921 5.921 13 Si 0.909 3.091 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.281 1.281 17 C 0.558 3.442 18 O -0.520 6.520 19 C 0.199 3.801 20 N -0.486 5.486 21 C 0.302 3.698 22 N -0.478 5.478 23 C 0.086 3.914 24 S 0.162 5.838 25 C -0.197 4.197 26 C -0.088 4.088 27 C -0.135 4.135 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.253 0.747 38 H 0.211 0.789 39 H 0.181 0.819 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.015 -23.136 -6.316 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.305 5.305 3 C -0.007 4.007 4 C 0.021 3.979 5 H 0.066 0.934 6 C -0.196 4.196 7 C 0.040 3.960 8 N -0.328 5.328 9 C -0.350 4.350 10 H 0.097 0.903 11 C -0.204 4.204 12 N -0.568 5.568 13 Si 0.740 3.260 14 H -0.216 1.216 15 H -0.217 1.217 16 H -0.207 1.207 17 C 0.342 3.658 18 O -0.396 6.396 19 C 0.043 3.957 20 N -0.204 5.204 21 C 0.011 3.989 22 N -0.195 5.195 23 C -0.168 4.168 24 S 0.420 5.580 25 C -0.331 4.331 26 C -0.117 4.117 27 C -0.150 4.150 28 H 0.079 0.921 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.063 0.937 38 H 0.227 0.773 39 H 0.199 0.801 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -7.394 -24.332 -6.406 26.224 hybrid contribution 1.536 2.243 -0.255 2.730 sum -5.858 -22.089 -6.660 23.803 Atomic orbital electron populations 1.22507 0.78052 1.03504 1.03216 1.47761 1.08143 1.05527 1.69108 1.21980 0.96929 0.82319 0.99496 1.22514 0.94605 0.88242 0.92515 0.93399 1.23754 0.97600 0.99295 0.98958 1.22141 0.91477 0.94039 0.88371 1.46108 1.63896 1.01691 1.21105 1.19017 1.29070 0.89084 0.97859 0.90301 1.24791 1.01230 0.97659 0.96692 1.69835 1.50021 1.20174 1.16723 0.86165 0.79385 0.81671 0.78828 1.21580 1.21691 1.20659 1.17642 0.86600 0.82517 0.79003 1.90776 1.12536 1.86208 1.50035 1.21822 0.89459 0.93157 0.91281 1.68794 1.07080 1.30250 1.14294 1.25135 1.01380 0.81602 0.90798 1.67887 1.07900 1.30037 1.13643 1.24092 0.94535 0.97603 1.00590 1.84304 0.93464 1.04242 1.75964 1.25496 1.02892 0.96630 1.08070 1.21110 0.93911 0.97383 0.99313 1.20613 0.95466 0.93892 1.05034 0.92134 0.87822 0.91631 0.90559 0.89232 0.90868 0.93464 0.91479 0.95543 0.93695 0.77314 0.80129 0.81009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 8.67 59.85 0.52 1.34 16 2 N -0.57 -8.63 2.72 -182.60 -0.50 -9.13 16 3 C 0.12 2.07 5.32 -4.04 -0.02 2.05 16 4 C 0.13 2.71 4.57 -66.87 -0.31 2.40 16 5 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 6 C -0.16 -3.01 7.24 -25.79 -0.19 -3.20 16 7 C 0.16 3.95 7.40 -2.85 -0.02 3.93 16 8 N -0.60 -15.41 3.58 -169.71 -0.61 -16.02 16 9 C -0.22 -6.21 10.51 -15.06 -0.16 -6.37 16 10 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -27.49 11.54 55.49 0.64 -26.85 16 13 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 C 0.56 8.70 7.63 -12.22 -0.09 8.61 16 18 O -0.52 -9.35 14.30 5.35 0.08 -9.27 16 19 C 0.20 2.65 6.72 -82.07 -0.55 2.10 16 20 N -0.49 -5.43 6.15 -10.79 -0.07 -5.50 16 21 C 0.30 2.84 12.25 -92.45 -1.13 1.71 16 22 N -0.48 -5.30 10.45 -13.28 -0.14 -5.44 16 23 C 0.09 0.98 7.70 -16.05 -0.12 0.86 16 24 S 0.16 1.39 23.23 -107.50 -2.50 -1.11 16 25 C -0.20 -1.63 11.03 28.81 0.32 -1.32 16 26 C -0.09 -0.98 9.64 -38.96 -0.38 -1.35 16 27 C -0.13 -1.70 6.02 -105.08 -0.63 -2.33 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 1.10 5.16 -52.40 -0.27 0.83 16 30 H 0.06 0.72 7.78 -51.93 -0.40 0.32 16 31 H 0.08 1.46 7.62 -51.93 -0.40 1.06 16 32 H 0.09 1.60 7.79 -51.92 -0.40 1.20 16 33 H 0.07 1.30 7.76 -51.93 -0.40 0.90 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.73 7.41 -51.93 -0.39 1.35 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.21 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.18 0.93 8.06 -52.48 -0.42 0.51 16 40 H 0.17 2.07 6.50 -52.49 -0.34 1.72 16 LS Contribution 347.89 15.07 5.24 5.24 Total: -1.00 -33.18 347.89 -10.42 -43.60 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -4.69 Total: -0.86 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -2.86 Total: 8.13 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: -0.67 Total: -62.94 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.50 Total: -1.11 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.18 -10.42 -43.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085603140.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.588 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds