Wall clock time and date at job start Tue Mar 31 2020 16:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46502 * 120.00336 * 2 1 4 4 C 1.52997 * 109.46975 * 95.05444 * 3 2 1 5 5 H 1.09005 * 112.96109 * 70.50623 * 4 3 2 6 6 C 1.53943 * 113.77523 * 298.82539 * 4 3 2 7 7 C 1.53947 * 86.28950 * 222.09269 * 6 4 3 8 8 N 1.47580 * 113.76738 * 202.17695 * 4 3 2 9 9 C 1.36940 * 134.49837 * 318.94204 * 8 4 3 10 10 H 1.07994 * 119.99769 * 5.07752 * 9 8 4 11 11 C 1.38811 * 120.00120 * 185.08331 * 9 8 4 12 12 N 1.31615 * 119.99853 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00019 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46973 * 89.99668 * 13 11 9 15 15 H 1.48498 * 109.47052 * 209.99726 * 13 11 9 16 16 H 1.48500 * 109.46787 * 329.99881 * 13 11 9 17 17 C 1.34775 * 120.00030 * 179.97438 * 2 1 3 18 18 O 1.21521 * 120.00255 * 182.91636 * 17 2 1 19 19 C 1.48097 * 120.00043 * 2.92180 * 17 2 1 20 20 N 1.32702 * 120.59059 * 353.91707 * 19 17 2 21 21 C 1.31712 * 121.24824 * 179.97438 * 20 19 17 22 22 N 1.31536 * 122.33152 * 0.03006 * 21 20 19 23 23 C 1.33233 * 121.08196 * 359.96897 * 22 21 20 24 24 S 1.75733 * 131.40513 * 179.97438 * 23 22 21 25 25 C 1.75351 * 92.19680 * 180.02562 * 24 23 22 26 26 C 1.32143 * 111.48425 * 0.02562 * 25 24 23 27 27 C 1.40615 * 119.06366 * 359.75338 * 23 22 21 28 28 H 1.08996 * 109.46931 * 264.06392 * 1 2 3 29 29 H 1.08995 * 109.46810 * 144.05852 * 1 2 3 30 30 H 1.09002 * 109.46756 * 24.06629 * 1 2 3 31 31 H 1.08997 * 109.47297 * 215.05751 * 3 2 1 32 32 H 1.09008 * 109.46877 * 335.05804 * 3 2 1 33 33 H 1.08997 * 113.73703 * 336.43982 * 6 4 3 34 34 H 1.09000 * 113.74044 * 107.63723 * 6 4 3 35 35 H 1.09004 * 113.76525 * 137.90917 * 7 6 4 36 36 H 1.08999 * 113.76792 * 269.19053 * 7 6 4 37 37 H 0.97008 * 119.99638 * 180.02562 * 12 11 9 38 38 H 1.07997 * 118.83681 * 180.02562 * 21 20 19 39 39 H 1.08008 * 124.25983 * 180.02562 * 25 24 23 40 40 H 1.07997 * 122.56603 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5627 1.6468 1.4369 5 1 3.3309 1.0022 1.8641 6 6 1.3431 1.8504 2.3540 7 6 2.0912 3.0758 2.9095 8 7 2.8227 3.0872 1.6251 9 6 3.4774 4.0471 0.9004 10 1 3.8727 3.8103 -0.0763 11 6 3.6329 5.3244 1.4211 12 7 3.1507 5.6131 2.6113 13 14 4.5266 6.6336 0.4328 14 1 3.5513 7.3664 -0.4139 15 1 5.1914 7.5852 1.3589 16 1 5.5475 5.9897 -0.4323 17 6 2.1389 -1.1672 0.0005 18 8 3.3529 -1.1679 0.0541 19 6 1.3999 -2.4489 -0.0643 20 7 0.0745 -2.4682 -0.0021 21 6 -0.5959 -3.6005 -0.0591 22 7 0.0014 -4.7663 -0.1789 23 6 1.3289 -4.8550 -0.2496 24 16 2.3941 -6.2436 -0.4088 25 6 3.8260 -5.2315 -0.3982 26 6 3.5138 -3.9526 -0.2830 27 6 2.0958 -3.6775 -0.1997 28 1 -0.3633 -0.1063 1.0221 29 1 -0.3633 -0.8320 -0.6032 30 1 -0.3633 0.9384 -0.4191 31 1 3.1078 1.1627 -0.5903 32 1 1.5723 2.0493 -0.4334 33 1 0.4279 2.1009 1.8177 34 1 1.2037 1.0517 3.0825 35 1 1.4545 3.9473 3.0617 36 1 2.7203 2.8529 3.7714 37 1 3.2591 6.5058 2.9750 38 1 -1.6741 -3.5708 -0.0054 39 1 4.8360 -5.6061 -0.4760 40 1 4.2598 -3.1721 -0.2580 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085603140.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:14 Heat of formation + Delta-G solvation = 100.295671 kcal Electronic energy + Delta-G solvation = -25726.060749 eV Core-core repulsion = 22055.906079 eV Total energy + Delta-G solvation = -3670.154670 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.50974 -40.81406 -39.45564 -37.50433 -36.41229 -34.96746 -34.18344 -31.45870 -30.08429 -29.85209 -27.82865 -26.45000 -25.86563 -25.29646 -24.10344 -22.33864 -21.70137 -20.86876 -19.62092 -19.16124 -18.51438 -17.50762 -17.22112 -17.00605 -16.86218 -16.63762 -16.21007 -15.99667 -15.80353 -15.21966 -15.13106 -14.91049 -14.12038 -13.99559 -13.94719 -13.87638 -13.61265 -13.36394 -13.24573 -12.93496 -12.62161 -12.46024 -12.26260 -12.23614 -12.16684 -11.95238 -11.81758 -11.59742 -11.48326 -11.27304 -10.85618 -10.25419 -10.21621 -9.68526 -9.27558 -8.90546 -7.90356 -5.23385 -1.06094 -0.59221 -0.01925 0.69485 1.04593 1.45011 1.47347 1.52173 1.55802 1.68215 2.47356 2.55200 2.69631 3.04328 3.20300 3.30394 3.36130 3.44616 3.75408 3.88230 4.04147 4.18312 4.27455 4.43102 4.53376 4.57921 4.68060 4.82452 4.89108 4.91762 4.95286 4.98411 5.01846 5.05175 5.19979 5.30066 5.44725 5.50742 5.55881 5.67596 5.93338 6.22915 6.66482 6.89939 6.92686 7.61396 8.57736 9.27466 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.023619 B = 0.002719 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.212935 B =10293.547541 C =10904.067384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.574 5.574 3 C 0.133 3.867 4 C 0.130 3.870 5 H 0.028 0.972 6 C -0.123 4.123 7 C 0.157 3.843 8 N -0.627 5.627 9 C -0.231 4.231 10 H 0.083 0.917 11 C -0.067 4.067 12 N -0.954 5.954 13 Si 0.977 3.023 14 H -0.281 1.281 15 H -0.296 1.296 16 H -0.271 1.271 17 C 0.555 3.445 18 O -0.553 6.553 19 C 0.180 3.820 20 N -0.482 5.482 21 C 0.302 3.698 22 N -0.484 5.484 23 C 0.065 3.935 24 S 0.210 5.790 25 C -0.172 4.172 26 C -0.122 4.122 27 C -0.150 4.150 28 H 0.067 0.933 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.009 0.991 37 H 0.248 0.752 38 H 0.252 0.748 39 H 0.215 0.785 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.295 -25.427 -7.481 27.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.305 5.305 3 C 0.009 3.991 4 C 0.023 3.977 5 H 0.046 0.954 6 C -0.161 4.161 7 C 0.032 3.968 8 N -0.353 5.353 9 C -0.359 4.359 10 H 0.101 0.899 11 C -0.259 4.259 12 N -0.603 5.603 13 Si 0.805 3.195 14 H -0.208 1.208 15 H -0.223 1.223 16 H -0.196 1.196 17 C 0.341 3.659 18 O -0.431 6.431 19 C 0.025 3.975 20 N -0.200 5.200 21 C 0.012 3.988 22 N -0.200 5.200 23 C -0.189 4.189 24 S 0.468 5.532 25 C -0.306 4.306 26 C -0.151 4.151 27 C -0.165 4.165 28 H 0.086 0.914 29 H 0.136 0.864 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.027 0.973 37 H 0.057 0.943 38 H 0.268 0.732 39 H 0.231 0.769 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.712 -26.665 -7.590 29.061 hybrid contribution 1.950 2.761 0.114 3.383 sum -6.762 -23.904 -7.476 25.942 Atomic orbital electron populations 1.22710 0.75759 1.04742 1.04054 1.47772 1.09333 1.04289 1.69062 1.21538 0.96777 0.83931 0.96877 1.22566 0.94789 0.85500 0.94859 0.95426 1.23504 0.97036 0.97239 0.98310 1.22107 0.91609 0.95362 0.87712 1.46483 1.63800 1.03471 1.21576 1.19394 1.28396 0.89873 0.98273 0.89942 1.25624 1.02557 0.99866 0.97897 1.70018 1.51633 1.20263 1.18407 0.85111 0.78309 0.78754 0.77356 1.20785 1.22269 1.19650 1.18031 0.86420 0.83399 0.78059 1.90754 1.14131 1.86884 1.51328 1.21430 0.90384 0.92162 0.93553 1.68733 1.06028 1.31230 1.14052 1.25973 1.02857 0.80615 0.89374 1.67990 1.07690 1.30719 1.13645 1.24520 0.94972 0.98533 1.00913 1.84181 0.92055 1.02342 1.74573 1.25924 1.04619 0.95651 1.04443 1.21019 0.93297 0.98245 1.02552 1.20791 0.96272 0.94095 1.05373 0.91445 0.86379 0.90642 0.92327 0.88820 0.88813 0.90937 0.93882 0.97307 0.94291 0.73203 0.76864 0.82708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.46 8.67 127.77 1.11 2.57 16 2 N -0.57 -16.86 2.72 -849.90 -2.31 -19.17 16 3 C 0.13 4.76 5.32 86.38 0.46 5.22 16 4 C 0.13 5.49 4.57 45.09 0.21 5.70 16 5 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 6 C -0.12 -4.58 7.24 31.25 0.23 -4.35 16 7 C 0.16 7.72 7.40 86.44 0.64 8.36 16 8 N -0.63 -32.76 3.58 -690.84 -2.47 -35.23 16 9 C -0.23 -13.11 10.51 84.03 0.88 -12.23 16 10 H 0.08 4.49 7.83 -2.91 -0.02 4.46 16 11 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 12 N -0.95 -58.55 11.54 21.65 0.25 -58.30 16 13 Si 0.98 46.40 29.55 68.60 2.03 48.42 16 14 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 15 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 16 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 17 C 0.56 17.40 7.63 86.86 0.66 18.07 16 18 O -0.55 -20.66 14.30 -3.78 -0.05 -20.71 16 19 C 0.18 4.69 6.72 42.52 0.29 4.97 16 20 N -0.48 -9.84 6.15 -188.05 -1.16 -11.00 16 21 C 0.30 4.87 12.25 180.99 2.22 7.09 16 22 N -0.48 -9.61 10.45 -195.91 -2.05 -11.65 16 23 C 0.06 1.37 7.70 85.06 0.66 2.03 16 24 S 0.21 3.07 23.23 -56.49 -1.31 1.76 16 25 C -0.17 -2.51 11.03 66.83 0.74 -1.77 16 26 C -0.12 -2.68 9.64 22.93 0.22 -2.46 16 27 C -0.15 -3.68 6.02 -20.16 -0.12 -3.80 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.12 2.22 5.16 -3.31 -0.02 2.20 16 30 H 0.07 1.47 7.78 -2.39 -0.02 1.46 16 31 H 0.06 2.30 7.62 -2.39 -0.02 2.28 16 32 H 0.09 3.29 7.79 -2.38 -0.02 3.27 16 33 H 0.09 3.13 7.76 -2.39 -0.02 3.11 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.04 2.30 7.41 -2.38 -0.02 2.28 16 36 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 38 H 0.25 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.21 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.16 3.92 6.50 -2.91 -0.02 3.90 16 Total: -1.00 -74.40 347.89 2.64 -71.76 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 1.08 Total: 8.12 kcal Atomic # 6 Polarization: 17.36 SS G_CDS: 8.65 Total: 26.01 kcal Atomic # 7 Polarization: -127.61 SS G_CDS: -7.74 Total: -135.35 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.05 Total: -20.71 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.31 Total: 1.76 kcal Total: -74.40 2.64 -71.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085603140.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.051 kcal (2) G-P(sol) polarization free energy of solvation -74.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds