Wall clock time and date at job start Tue Mar 31 2020 16:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46497 * 119.99943 * 2 1 4 4 C 1.53001 * 109.47353 * 86.51429 * 3 2 1 5 5 H 1.09002 * 112.95910 * 294.35608 * 4 3 2 6 6 C 1.53944 * 113.77309 * 66.03054 * 4 3 2 7 7 C 1.53941 * 86.29025 * 137.90952 * 6 4 3 8 8 N 1.47577 * 113.77165 * 162.67771 * 4 3 2 9 9 C 1.36933 * 134.49176 * 41.06690 * 8 4 3 10 10 H 1.08002 * 120.00290 * 4.86728 * 9 8 4 11 11 C 1.38813 * 120.00171 * 184.86724 * 9 8 4 12 12 N 1.31620 * 119.99954 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00109 * 179.97438 * 11 9 8 14 14 H 1.48492 * 109.47173 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46870 * 120.00546 * 13 11 9 16 16 H 1.48503 * 109.47033 * 240.00200 * 13 11 9 17 17 C 1.34775 * 119.99821 * 179.97438 * 2 1 3 18 18 O 1.21611 * 120.00117 * 185.64675 * 17 2 1 19 19 C 1.47381 * 120.00066 * 5.64026 * 17 2 1 20 20 C 1.47021 * 127.19222 * 6.27329 * 19 17 2 21 21 C 1.34173 * 105.95297 * 179.97438 * 20 19 17 22 22 O 1.34211 * 109.13003 * 359.97438 * 21 20 19 23 23 C 1.33660 * 110.90596 * 359.72577 * 22 21 20 24 24 C 1.50691 * 125.80407 * 180.28767 * 23 22 21 25 25 F 1.39901 * 109.47240 * 270.18802 * 24 23 22 26 26 F 1.39902 * 109.47155 * 30.19024 * 24 23 22 27 27 F 1.39903 * 109.47370 * 150.18757 * 24 23 22 28 28 H 1.08997 * 109.46750 * 95.35958 * 1 2 3 29 29 H 1.09002 * 109.46843 * 215.35602 * 1 2 3 30 30 H 1.08998 * 109.46915 * 335.35826 * 1 2 3 31 31 H 1.08997 * 109.47334 * 326.50734 * 3 2 1 32 32 H 1.09002 * 109.46784 * 206.50583 * 3 2 1 33 33 H 1.08992 * 113.74415 * 252.25831 * 6 4 3 34 34 H 1.08998 * 113.73905 * 23.46055 * 6 4 3 35 35 H 1.09003 * 113.76778 * 90.69856 * 7 6 4 36 36 H 1.08999 * 113.77090 * 221.98127 * 7 6 4 37 37 H 0.97002 * 120.00105 * 179.97438 * 12 11 9 38 38 H 1.07995 * 127.02368 * 359.97438 * 20 19 17 39 39 H 1.08004 * 125.43870 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3766 1.7543 1.4398 5 1 1.4336 2.0118 1.9221 6 6 3.2822 0.8473 2.2925 7 6 3.8957 2.1471 2.8438 8 7 3.4243 2.7820 1.5950 9 6 3.8054 3.8806 0.8720 10 1 3.2330 4.1836 0.0077 11 6 4.9277 4.6050 1.2497 12 7 5.6258 4.2356 2.3027 13 14 5.4481 6.1033 0.2629 14 1 4.5039 6.3054 -0.8652 15 1 5.4355 7.3021 1.1394 16 1 6.8185 5.8938 -0.2695 17 6 2.1389 -1.1672 0.0005 18 8 3.3506 -1.1698 0.1042 19 6 1.4073 -2.4405 -0.1244 20 6 -0.0287 -2.6186 -0.3845 21 6 -0.2365 -3.9438 -0.4143 22 8 0.9275 -4.5765 -0.1994 23 6 1.9225 -3.7002 -0.0301 24 6 3.3669 -4.0451 0.2259 25 9 3.5847 -4.1477 1.6040 26 9 3.6705 -5.2658 -0.3864 27 9 4.1866 -3.0419 -0.3023 28 1 -0.3633 -0.0960 -1.0232 29 1 -0.3633 -0.8382 0.5947 30 1 -0.3633 0.9341 0.4285 31 1 1.6370 2.0119 -0.5671 32 1 3.1757 1.1235 -0.4587 33 1 2.7423 0.2656 3.0395 34 1 3.9774 0.2459 1.7067 35 1 3.3998 2.5216 3.7394 36 1 4.9808 2.1141 2.9408 37 1 6.4102 4.7415 2.5664 38 1 -0.7657 -1.8415 -0.5232 39 1 -1.1885 -4.4248 -0.5842 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085619706.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:29 Heat of formation + Delta-G solvation = -75.318632 kcal Electronic energy + Delta-G solvation = -29725.834159 eV Core-core repulsion = 25031.161919 eV Total energy + Delta-G solvation = -4694.672240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.20571 -47.79615 -47.59440 -43.14770 -39.73907 -37.58909 -35.46849 -33.50101 -32.06246 -31.34944 -28.73681 -27.75748 -27.08805 -25.89166 -23.67362 -23.15503 -22.45879 -21.39007 -20.04017 -18.92582 -18.69311 -18.40512 -18.15439 -17.32806 -16.71088 -16.55789 -16.06468 -15.74166 -15.39629 -14.66907 -14.58818 -14.56314 -14.18718 -14.13337 -13.98496 -13.90482 -13.76566 -13.49795 -13.45780 -13.11688 -12.99993 -12.50584 -12.31890 -12.21362 -11.58851 -11.38253 -10.98422 -10.83978 -10.61588 -10.39702 -10.28600 -9.82849 -9.71791 -9.61430 -9.50804 -9.45698 -8.70618 -8.37006 -6.78441 -5.68057 -3.01710 0.59857 1.57750 1.61723 2.79599 2.95779 3.19498 3.42943 3.47208 3.50509 3.51869 4.07606 4.18362 4.23520 4.30874 4.51966 4.81487 4.92018 5.00392 5.15948 5.22736 5.31349 5.50079 5.55338 5.62741 5.68834 5.91700 5.98684 6.14833 6.30941 6.44005 6.59773 6.71264 6.80147 6.90624 7.35747 7.43772 7.61773 7.72173 8.07620 8.23836 9.11106 9.78626 10.69657 11.48047 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.018767 B = 0.003425 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.611045 B = 8172.417208 C = 8885.287632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.595 5.595 3 C 0.118 3.882 4 C 0.128 3.872 5 H 0.040 0.960 6 C -0.157 4.157 7 C 0.155 3.845 8 N -0.600 5.600 9 C -0.223 4.223 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.917 5.917 13 Si 0.909 3.091 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.290 1.290 17 C 0.567 3.433 18 O -0.501 6.501 19 C -0.146 4.146 20 C -0.208 4.208 21 C -0.001 4.001 22 O -0.150 6.150 23 C -0.050 4.050 24 C 0.554 3.446 25 F -0.163 7.163 26 F -0.174 7.174 27 F -0.121 7.121 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.039 0.961 34 H 0.091 0.909 35 H 0.020 0.980 36 H 0.077 0.923 37 H 0.252 0.748 38 H 0.185 0.815 39 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.492 -18.863 -5.553 25.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.328 5.328 3 C -0.005 4.005 4 C 0.020 3.980 5 H 0.057 0.943 6 C -0.195 4.195 7 C 0.030 3.970 8 N -0.326 5.326 9 C -0.350 4.350 10 H 0.095 0.905 11 C -0.203 4.203 12 N -0.564 5.564 13 Si 0.740 3.260 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.217 1.217 17 C 0.354 3.646 18 O -0.377 6.377 19 C -0.151 4.151 20 C -0.227 4.227 21 C -0.069 4.069 22 O -0.046 6.046 23 C -0.104 4.104 24 C 0.499 3.501 25 F -0.144 7.144 26 F -0.156 7.156 27 F -0.102 7.102 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.058 0.942 34 H 0.110 0.890 35 H 0.038 0.962 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.202 0.798 39 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -14.535 -18.855 -5.559 24.447 hybrid contribution -0.015 1.101 -0.384 1.167 sum -14.550 -17.753 -5.943 23.711 Atomic orbital electron populations 1.22381 0.80361 1.03902 1.01294 1.47563 1.06631 1.06094 1.72517 1.21931 0.97585 0.81773 0.99194 1.22516 0.93052 0.89539 0.92873 0.94267 1.23842 0.99438 0.97388 0.98870 1.22311 1.00089 0.86488 0.88150 1.45947 1.33953 1.28397 1.24299 1.19007 1.07237 1.01861 1.06919 0.90466 1.24776 0.97685 0.99637 0.98222 1.69843 1.19175 1.40836 1.26579 0.86093 0.78345 0.82506 0.79068 1.20538 1.21869 1.21697 1.17180 0.86828 0.82420 0.78201 1.90948 1.12609 1.86212 1.47938 1.21571 0.94551 0.93275 1.05697 1.23738 0.94695 0.97251 1.06993 1.24329 0.88095 0.92279 1.02153 1.83751 1.15483 1.36436 1.68891 1.22211 0.89473 0.88559 1.10165 1.16771 0.83064 0.75102 0.75201 1.93277 1.95169 1.95789 1.30190 1.93234 1.94095 1.45207 1.83015 1.93495 1.72254 1.58645 1.85805 0.92410 0.90280 0.90429 0.91124 0.88723 0.94233 0.89015 0.96179 0.90495 0.93776 0.79819 0.76265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.58 8.68 59.85 0.52 1.10 16 2 N -0.59 -8.53 2.81 -182.86 -0.51 -9.05 16 3 C 0.12 2.11 5.35 -4.04 -0.02 2.09 16 4 C 0.13 2.66 4.57 -66.87 -0.31 2.36 16 5 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 6 C -0.16 -3.36 7.13 -25.80 -0.18 -3.55 16 7 C 0.15 3.90 7.65 -2.85 -0.02 3.88 16 8 N -0.60 -15.69 3.58 -169.73 -0.61 -16.30 16 9 C -0.22 -6.28 10.51 -15.06 -0.16 -6.44 16 10 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 11 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 12 N -0.92 -27.98 11.32 55.49 0.63 -27.35 16 13 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 17 C 0.57 8.94 7.27 -12.54 -0.09 8.85 16 18 O -0.50 -9.75 10.53 5.27 0.06 -9.70 16 19 C -0.15 -1.82 6.04 -103.27 -0.62 -2.44 16 20 C -0.21 -1.62 8.88 -37.46 -0.33 -1.95 16 21 C 0.00 -0.01 12.03 29.30 0.35 0.34 16 22 O -0.15 -1.49 10.51 7.64 0.08 -1.41 16 23 C -0.05 -0.63 6.70 -34.97 -0.23 -0.86 16 24 C 0.55 7.65 3.39 36.00 0.12 7.77 16 25 F -0.16 -2.33 17.30 2.25 0.04 -2.29 16 26 F -0.17 -2.21 17.29 2.25 0.04 -2.17 16 27 F -0.12 -2.00 13.35 2.25 0.03 -1.97 16 28 H 0.06 0.40 7.47 -51.93 -0.39 0.02 16 29 H 0.08 0.59 5.17 -51.93 -0.27 0.32 16 30 H 0.08 0.68 8.03 -51.93 -0.42 0.27 16 31 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 32 H 0.09 2.00 7.40 -51.93 -0.38 1.61 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 2.12 6.20 -51.93 -0.32 1.80 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 2.15 6.97 -51.93 -0.36 1.79 16 37 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.18 0.90 4.84 -52.49 -0.25 0.65 16 39 H 0.22 0.29 8.06 -52.48 -0.42 -0.13 16 LS Contribution 334.06 15.07 5.03 5.03 Total: -1.00 -34.82 334.06 -5.37 -40.19 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -4.05 Total: -3.32 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -1.07 Total: 10.87 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.49 Total: -52.71 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.14 Total: -11.11 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 0.11 Total: -6.43 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.82 -5.37 -40.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085619706.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.132 kcal (2) G-P(sol) polarization free energy of solvation -34.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds