Wall clock time and date at job start Tue Mar 31 2020 16:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46497 * 119.99943 * 2 1 4 4 C 1.53001 * 109.47353 * 86.51429 * 3 2 1 5 5 H 1.09002 * 112.95910 * 294.35608 * 4 3 2 6 6 C 1.53944 * 113.77309 * 66.03054 * 4 3 2 7 7 C 1.53941 * 86.29025 * 137.90952 * 6 4 3 8 8 N 1.47577 * 113.77165 * 162.67771 * 4 3 2 9 9 C 1.36933 * 134.49176 * 41.06690 * 8 4 3 10 10 H 1.08002 * 120.00290 * 4.86728 * 9 8 4 11 11 C 1.38813 * 120.00171 * 184.86724 * 9 8 4 12 12 N 1.31620 * 119.99954 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00109 * 179.97438 * 11 9 8 14 14 H 1.48492 * 109.47173 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46870 * 120.00546 * 13 11 9 16 16 H 1.48503 * 109.47033 * 240.00200 * 13 11 9 17 17 C 1.34775 * 119.99821 * 179.97438 * 2 1 3 18 18 O 1.21611 * 120.00117 * 185.64675 * 17 2 1 19 19 C 1.47381 * 120.00066 * 5.64026 * 17 2 1 20 20 C 1.47021 * 127.19222 * 6.27329 * 19 17 2 21 21 C 1.34173 * 105.95297 * 179.97438 * 20 19 17 22 22 O 1.34211 * 109.13003 * 359.97438 * 21 20 19 23 23 C 1.33660 * 110.90596 * 359.72577 * 22 21 20 24 24 C 1.50691 * 125.80407 * 180.28767 * 23 22 21 25 25 F 1.39901 * 109.47240 * 270.18802 * 24 23 22 26 26 F 1.39902 * 109.47155 * 30.19024 * 24 23 22 27 27 F 1.39903 * 109.47370 * 150.18757 * 24 23 22 28 28 H 1.08997 * 109.46750 * 95.35958 * 1 2 3 29 29 H 1.09002 * 109.46843 * 215.35602 * 1 2 3 30 30 H 1.08998 * 109.46915 * 335.35826 * 1 2 3 31 31 H 1.08997 * 109.47334 * 326.50734 * 3 2 1 32 32 H 1.09002 * 109.46784 * 206.50583 * 3 2 1 33 33 H 1.08992 * 113.74415 * 252.25831 * 6 4 3 34 34 H 1.08998 * 113.73905 * 23.46055 * 6 4 3 35 35 H 1.09003 * 113.76778 * 90.69856 * 7 6 4 36 36 H 1.08999 * 113.77090 * 221.98127 * 7 6 4 37 37 H 0.97002 * 120.00105 * 179.97438 * 12 11 9 38 38 H 1.07995 * 127.02368 * 359.97438 * 20 19 17 39 39 H 1.08004 * 125.43870 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3766 1.7543 1.4398 5 1 1.4336 2.0118 1.9221 6 6 3.2822 0.8473 2.2925 7 6 3.8957 2.1471 2.8438 8 7 3.4243 2.7820 1.5950 9 6 3.8054 3.8806 0.8720 10 1 3.2330 4.1836 0.0077 11 6 4.9277 4.6050 1.2497 12 7 5.6258 4.2356 2.3027 13 14 5.4481 6.1033 0.2629 14 1 4.5039 6.3054 -0.8652 15 1 5.4355 7.3021 1.1394 16 1 6.8185 5.8938 -0.2695 17 6 2.1389 -1.1672 0.0005 18 8 3.3506 -1.1698 0.1042 19 6 1.4073 -2.4405 -0.1244 20 6 -0.0287 -2.6186 -0.3845 21 6 -0.2365 -3.9438 -0.4143 22 8 0.9275 -4.5765 -0.1994 23 6 1.9225 -3.7002 -0.0301 24 6 3.3669 -4.0451 0.2259 25 9 3.5847 -4.1477 1.6040 26 9 3.6705 -5.2658 -0.3864 27 9 4.1866 -3.0419 -0.3023 28 1 -0.3633 -0.0960 -1.0232 29 1 -0.3633 -0.8382 0.5947 30 1 -0.3633 0.9341 0.4285 31 1 1.6370 2.0119 -0.5671 32 1 3.1757 1.1235 -0.4587 33 1 2.7423 0.2656 3.0395 34 1 3.9774 0.2459 1.7067 35 1 3.3998 2.5216 3.7394 36 1 4.9808 2.1141 2.9408 37 1 6.4102 4.7415 2.5664 38 1 -0.7657 -1.8415 -0.5232 39 1 -1.1885 -4.4248 -0.5842 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085619706.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:28 Heat of formation + Delta-G solvation = -98.532770 kcal Electronic energy + Delta-G solvation = -29726.840800 eV Core-core repulsion = 25031.161919 eV Total energy + Delta-G solvation = -4695.678881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.28732 -48.85543 -48.73594 -43.87276 -40.99832 -39.33400 -36.65440 -34.47733 -34.04760 -32.11742 -30.09233 -29.83549 -28.01430 -26.88584 -25.33276 -24.86130 -23.45595 -22.48922 -21.06293 -20.74906 -19.75366 -19.44676 -19.16589 -18.72349 -18.14784 -17.43891 -17.29641 -16.95210 -16.53481 -16.38005 -15.83705 -15.66574 -15.63062 -15.24346 -15.21250 -15.07521 -14.98419 -14.89055 -14.54693 -14.11396 -13.95065 -13.93485 -13.78058 -13.37812 -13.34536 -12.95122 -12.58396 -12.51962 -12.32311 -12.23830 -11.78347 -11.57431 -11.31262 -11.09502 -10.94317 -10.81058 -10.17500 -9.62726 -8.87018 -7.86107 -5.21044 -0.29453 0.77639 0.99945 1.44806 1.47382 1.56783 1.80234 1.92686 2.11513 2.49745 2.61058 3.12351 3.17753 3.30162 3.37519 3.46260 3.60655 3.92680 4.07978 4.17778 4.28832 4.33233 4.36611 4.49389 4.66550 4.67290 4.79899 4.85083 4.94122 5.04666 5.08861 5.17606 5.26865 5.47490 5.55289 5.65458 5.78737 5.96743 6.35732 6.92611 7.09672 7.64136 8.60762 9.30801 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.018767 B = 0.003425 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.611045 B = 8172.417208 C = 8885.287632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.592 5.592 3 C 0.133 3.867 4 C 0.138 3.862 5 H 0.064 0.936 6 C -0.135 4.135 7 C 0.148 3.852 8 N -0.628 5.628 9 C -0.225 4.225 10 H 0.090 0.910 11 C -0.073 4.073 12 N -0.957 5.957 13 Si 0.978 3.022 14 H -0.259 1.259 15 H -0.293 1.293 16 H -0.297 1.297 17 C 0.558 3.442 18 O -0.552 6.552 19 C -0.159 4.159 20 C -0.208 4.208 21 C 0.027 3.973 22 O -0.154 6.154 23 C -0.072 4.072 24 C 0.548 3.452 25 F -0.172 7.172 26 F -0.171 7.171 27 F -0.143 7.143 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.020 0.980 36 H 0.038 0.962 37 H 0.245 0.755 38 H 0.218 0.782 39 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.893 -19.678 -6.993 28.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.324 5.324 3 C 0.009 3.991 4 C 0.031 3.969 5 H 0.082 0.918 6 C -0.173 4.173 7 C 0.023 3.977 8 N -0.354 5.354 9 C -0.353 4.353 10 H 0.108 0.892 11 C -0.265 4.265 12 N -0.607 5.607 13 Si 0.806 3.194 14 H -0.183 1.183 15 H -0.220 1.220 16 H -0.225 1.225 17 C 0.346 3.654 18 O -0.431 6.431 19 C -0.165 4.165 20 C -0.226 4.226 21 C -0.039 4.039 22 O -0.049 6.049 23 C -0.126 4.126 24 C 0.493 3.507 25 F -0.153 7.153 26 F -0.152 7.152 27 F -0.124 7.124 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.038 0.962 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.234 0.766 39 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -19.022 -19.700 -7.022 28.271 hybrid contribution 1.242 1.238 0.065 1.755 sum -17.781 -18.462 -6.957 26.559 Atomic orbital electron populations 1.22807 0.76651 1.05455 1.03896 1.47575 1.08739 1.04240 1.71820 1.21453 0.96794 0.84002 0.96896 1.22668 0.92475 0.87043 0.94710 0.91826 1.23544 0.99024 0.95808 0.98928 1.22232 0.98016 0.88965 0.88500 1.46275 1.35746 1.28884 1.24520 1.19472 1.06990 1.01891 1.06981 0.89229 1.25675 0.98209 1.03030 0.99629 1.70059 1.19698 1.42271 1.28637 0.85011 0.77658 0.78642 0.78047 1.18308 1.22024 1.22460 1.17746 0.86558 0.83797 0.77303 1.90932 1.15014 1.87071 1.50104 1.21470 0.96975 0.91353 1.06668 1.24058 0.92421 0.98870 1.07203 1.25497 0.88153 0.92017 0.98252 1.83778 1.16085 1.36375 1.68645 1.21796 0.89094 0.89157 1.12529 1.16972 0.84223 0.74717 0.74753 1.93246 1.95391 1.95810 1.30876 1.93228 1.94249 1.44855 1.82877 1.93446 1.73258 1.59658 1.86064 0.89324 0.87968 0.89617 0.89102 0.92766 0.91644 0.91180 0.96176 0.94393 0.94556 0.76561 0.70752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.72 8.68 127.77 1.11 1.83 16 2 N -0.59 -15.75 2.81 -850.71 -2.39 -18.15 16 3 C 0.13 4.64 5.35 86.38 0.46 5.10 16 4 C 0.14 5.60 4.57 45.09 0.21 5.80 16 5 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 6 C -0.13 -5.86 7.13 31.25 0.22 -5.64 16 7 C 0.15 7.76 7.65 86.43 0.66 8.43 16 8 N -0.63 -33.34 3.58 -690.92 -2.48 -35.81 16 9 C -0.23 -12.81 10.51 84.03 0.88 -11.93 16 10 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 11 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 12 N -0.96 -60.78 11.32 21.65 0.25 -60.54 16 13 Si 0.98 47.07 29.55 68.60 2.03 49.10 16 14 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 15 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 16 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 17 C 0.56 17.27 7.27 86.65 0.63 17.90 16 18 O -0.55 -22.45 10.53 -4.07 -0.04 -22.49 16 19 C -0.16 -3.66 6.04 -18.99 -0.11 -3.78 16 20 C -0.21 -2.19 8.88 23.65 0.21 -1.98 16 21 C 0.03 0.19 12.03 66.89 0.80 1.00 16 22 O -0.15 -2.58 10.51 4.43 0.05 -2.54 16 23 C -0.07 -1.72 6.70 25.26 0.17 -1.55 16 24 C 0.55 15.65 3.39 71.23 0.24 15.90 16 25 F -0.17 -5.14 17.30 44.97 0.78 -4.36 16 26 F -0.17 -4.42 17.29 44.97 0.78 -3.65 16 27 F -0.14 -5.04 13.35 44.97 0.60 -4.44 16 28 H 0.09 0.73 7.47 -2.39 -0.02 0.71 16 29 H 0.10 0.96 5.17 -2.39 -0.01 0.95 16 30 H 0.09 1.09 8.03 -2.39 -0.02 1.07 16 31 H 0.09 2.80 8.10 -2.39 -0.02 2.78 16 32 H 0.05 2.35 7.40 -2.39 -0.02 2.34 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.07 3.40 6.20 -2.39 -0.01 3.38 16 35 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.04 2.26 6.97 -2.39 -0.02 2.24 16 37 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 38 H 0.22 0.69 4.84 -2.91 -0.01 0.67 16 39 H 0.28 -1.40 8.06 -2.91 -0.02 -1.42 16 Total: -1.00 -82.51 334.06 6.63 -75.88 By element: Atomic # 1 Polarization: -1.35 SS G_CDS: 1.11 Total: -0.24 kcal Atomic # 6 Polarization: 21.28 SS G_CDS: 5.95 Total: 27.23 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -4.62 Total: -114.50 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: 0.00 Total: -25.03 kcal Atomic # 9 Polarization: -14.61 SS G_CDS: 2.16 Total: -12.45 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -82.51 6.63 -75.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085619706.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.651 kcal (2) G-P(sol) polarization free energy of solvation -82.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds