Wall clock time and date at job start Tue Mar 31 2020 16:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.46494 * 119.99732 * 2 1 4 4 C 1.53003 * 109.47013 * 264.60364 * 3 2 1 5 5 H 1.08991 * 112.96519 * 290.00141 * 4 3 2 6 6 C 1.53943 * 113.76578 * 61.68502 * 4 3 2 7 7 C 1.53947 * 86.29139 * 137.90719 * 6 4 3 8 8 N 1.47583 * 86.11313 * 336.38626 * 7 6 4 9 9 C 1.36932 * 134.49230 * 204.63634 * 8 7 6 10 10 H 1.07999 * 120.00195 * 184.95467 * 9 8 7 11 11 C 1.38817 * 120.00262 * 4.95624 * 9 8 7 12 12 N 1.31628 * 119.99586 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00373 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47310 * 90.00422 * 13 11 9 15 15 H 1.48499 * 109.47395 * 210.00400 * 13 11 9 16 16 H 1.48503 * 109.47290 * 330.00189 * 13 11 9 17 17 C 1.34774 * 119.99600 * 179.72360 * 2 1 3 18 18 O 1.21512 * 119.99837 * 186.07805 * 17 2 1 19 19 C 1.48210 * 120.00596 * 6.07461 * 17 2 1 20 20 N 1.32983 * 120.60834 * 6.43746 * 19 17 2 21 21 C 1.31773 * 120.90252 * 180.02562 * 20 19 17 22 22 N 1.31191 * 122.65062 * 359.97386 * 21 20 19 23 23 C 1.34525 * 121.10296 * 0.02562 * 22 21 20 24 24 C 1.44799 * 130.27189 * 180.02562 * 23 22 21 25 25 C 1.32209 * 114.91151 * 180.02562 * 24 23 22 26 26 S 1.75375 * 111.45098 * 0.02562 * 25 24 23 27 27 C 1.40444 * 120.61521 * 186.15727 * 19 17 2 28 28 H 1.08996 * 109.46461 * 95.84857 * 1 2 3 29 29 H 1.09003 * 109.47099 * 215.84803 * 1 2 3 30 30 H 1.09000 * 109.46715 * 335.84887 * 1 2 3 31 31 H 1.08997 * 109.47388 * 24.60734 * 3 2 1 32 32 H 1.09000 * 109.46697 * 144.60619 * 3 2 1 33 33 H 1.09007 * 113.73576 * 252.24940 * 6 4 3 34 34 H 1.08996 * 113.74452 * 23.45085 * 6 4 3 35 35 H 1.08997 * 113.77268 * 90.69025 * 7 6 4 36 36 H 1.08999 * 113.76699 * 221.97772 * 7 6 4 37 37 H 0.96997 * 119.99846 * 179.97438 * 12 11 9 38 38 H 1.07997 * 118.67381 * 179.97438 * 21 20 19 39 39 H 1.07999 * 122.54229 * 0.02751 * 24 23 22 40 40 H 1.07996 * 124.27134 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5700 1.6426 -1.4361 5 1 3.3341 0.9914 -1.8605 6 6 1.3547 1.8554 -2.3569 7 6 2.1144 3.0741 -2.9114 8 7 2.8387 3.0813 -1.6255 9 6 3.4963 4.0384 -0.8998 10 1 4.0257 3.7644 0.0007 11 6 3.4823 5.3609 -1.3215 12 7 2.8365 5.6949 -2.4188 13 14 4.3786 6.6666 -0.3312 14 1 5.7760 6.7857 -0.8192 15 1 3.6861 7.9706 -0.4899 16 1 4.3863 6.2817 1.1031 17 6 2.1389 -1.1672 0.0056 18 8 3.3489 -1.1697 0.1171 19 6 1.4041 -2.4478 -0.1240 20 7 0.0980 -2.4568 -0.3738 21 6 -0.5611 -3.5919 -0.4897 22 7 0.0187 -4.7625 -0.3688 23 6 1.3361 -4.8627 -0.1159 24 6 2.1704 -6.0341 0.0532 25 6 3.4449 -5.7798 0.2956 26 16 3.7570 -4.0547 0.3427 27 6 2.0755 -3.6742 0.0089 28 1 -0.3632 -0.1047 -1.0223 29 1 -0.3633 -0.8330 0.6019 30 1 -0.3633 0.9377 0.4205 31 1 1.5701 2.0505 0.4279 32 1 3.1047 1.1645 0.5952 33 1 1.2120 1.0581 -3.0864 34 1 0.4396 2.1120 -1.8234 35 1 2.7456 2.8451 -3.7699 36 1 1.4850 3.9501 -3.0679 37 1 2.8264 6.6190 -2.7133 38 1 -1.6213 -3.5572 -0.6924 39 1 1.7809 -7.0392 -0.0136 40 1 4.1986 -6.5386 0.4457 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085634604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:12 Heat of formation + Delta-G solvation = 120.604608 kcal Electronic energy + Delta-G solvation = -25716.697969 eV Core-core repulsion = 22047.423961 eV Total energy + Delta-G solvation = -3669.274009 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51621 -39.64446 -37.81593 -36.55482 -35.29351 -33.61636 -32.11214 -30.98299 -28.75786 -27.83687 -26.75554 -25.28791 -25.04569 -23.31457 -22.71213 -21.86067 -19.96858 -19.02128 -18.70303 -17.75124 -17.06878 -16.69920 -16.25139 -15.76573 -15.65899 -15.14146 -14.90030 -14.68013 -14.48988 -14.11359 -13.62089 -13.48617 -13.16235 -12.88581 -12.74337 -12.45616 -12.31979 -12.14029 -11.57413 -11.42105 -11.14271 -11.03775 -10.87584 -10.77940 -10.67862 -10.47019 -10.35926 -9.81684 -9.71997 -9.71169 -9.58306 -9.40153 -8.75114 -8.47866 -8.27003 -6.84543 -5.73084 -3.06810 -0.11652 0.25175 1.04352 1.61319 1.63510 2.68433 2.84129 3.40946 3.43211 3.46042 3.47552 3.48223 3.66539 4.01491 4.32568 4.48606 4.65524 4.77172 5.11017 5.18477 5.37615 5.42473 5.46988 5.52451 5.59832 5.69998 5.81492 5.84384 5.96591 6.09630 6.19261 6.25747 6.35498 6.45481 6.61408 6.72727 6.79445 7.27866 7.37046 7.48826 7.59952 7.63230 8.01697 8.04688 9.07688 9.74002 10.63616 11.42829 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.022161 B = 0.002913 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.172026 B = 9609.001312 C =10329.067234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.575 5.575 3 C 0.115 3.885 4 C 0.129 3.871 5 H 0.047 0.953 6 C -0.155 4.155 7 C 0.155 3.845 8 N -0.600 5.600 9 C -0.222 4.222 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.920 5.920 13 Si 0.910 3.090 14 H -0.289 1.289 15 H -0.290 1.290 16 H -0.280 1.280 17 C 0.556 3.444 18 O -0.519 6.519 19 C 0.197 3.803 20 N -0.476 5.476 21 C 0.290 3.710 22 N -0.480 5.480 23 C 0.167 3.833 24 C -0.124 4.124 25 C -0.183 4.183 26 S 0.219 5.781 27 C -0.230 4.230 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.022 0.978 36 H 0.079 0.921 37 H 0.253 0.747 38 H 0.208 0.792 39 H 0.158 0.842 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.274 -23.456 5.356 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.305 5.305 3 C -0.008 4.008 4 C 0.021 3.979 5 H 0.064 0.936 6 C -0.194 4.194 7 C 0.030 3.970 8 N -0.326 5.326 9 C -0.350 4.350 10 H 0.096 0.904 11 C -0.203 4.203 12 N -0.567 5.567 13 Si 0.741 3.259 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.206 1.206 17 C 0.340 3.660 18 O -0.394 6.394 19 C 0.037 3.963 20 N -0.194 5.194 21 C -0.002 4.002 22 N -0.194 5.194 23 C 0.020 3.980 24 C -0.155 4.155 25 C -0.321 4.321 26 S 0.482 5.518 27 C -0.352 4.352 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.040 0.960 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.224 0.776 39 H 0.175 0.825 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.201 -22.256 5.552 23.520 hybrid contribution 0.016 -0.171 0.191 0.257 sum -5.185 -22.427 5.743 23.724 Atomic orbital electron populations 1.22169 0.77982 1.02382 1.03043 1.47705 1.08093 1.05523 1.69215 1.22005 0.97134 0.82174 0.99472 1.22529 0.94532 0.88224 0.92589 0.93569 1.23734 0.97601 0.99182 0.98834 1.22275 0.91864 0.94835 0.88019 1.46008 1.64367 1.02111 1.20159 1.19027 1.25254 0.86374 1.04353 0.90388 1.24775 1.00817 0.96886 0.97867 1.69826 1.46071 1.17142 1.23670 0.86145 0.79086 0.81333 0.79352 1.21678 1.21674 1.20586 1.17718 0.86598 0.82712 0.79001 1.90804 1.12714 1.86000 1.49905 1.21221 0.89776 0.92325 0.92978 1.69023 1.06634 1.31037 1.12706 1.24937 1.01098 0.81783 0.92349 1.68208 1.09265 1.29676 1.12278 1.20415 0.90089 0.91424 0.96036 1.20488 0.91755 0.98039 1.05176 1.25937 1.00148 1.02753 1.03281 1.85152 1.00952 0.95237 1.70430 1.24345 1.02344 0.98407 1.10109 0.91616 0.89887 0.91470 0.89090 0.90370 0.93566 0.90769 0.96025 0.90325 0.93719 0.77617 0.82479 0.80173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.05 8.45 59.85 0.51 1.56 16 2 N -0.57 -8.86 2.73 -182.55 -0.50 -9.36 16 3 C 0.11 2.10 5.39 -4.04 -0.02 2.08 16 4 C 0.13 2.72 4.57 -66.86 -0.31 2.42 16 5 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 6 C -0.16 -2.99 7.27 -25.81 -0.19 -3.18 16 7 C 0.16 3.72 7.64 -2.97 -0.02 3.70 16 8 N -0.60 -15.41 3.57 -170.76 -0.61 -16.02 16 9 C -0.22 -6.22 10.51 -15.06 -0.16 -6.38 16 10 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 11 C -0.01 -0.20 5.50 -17.42 -0.10 -0.29 16 12 N -0.92 -27.32 11.30 55.49 0.63 -26.69 16 13 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.56 8.95 7.62 -12.16 -0.09 8.86 16 18 O -0.52 -9.59 14.87 5.36 0.08 -9.51 16 19 C 0.20 2.73 6.60 -82.44 -0.54 2.18 16 20 N -0.48 -5.61 6.40 -11.12 -0.07 -5.68 16 21 C 0.29 2.88 12.22 -92.69 -1.13 1.75 16 22 N -0.48 -5.42 10.49 -11.75 -0.12 -5.54 16 23 C 0.17 1.93 7.23 -83.23 -0.60 1.32 16 24 C -0.12 -1.06 10.39 -38.92 -0.40 -1.46 16 25 C -0.18 -1.38 11.03 28.81 0.32 -1.06 16 26 S 0.22 2.43 21.61 -107.50 -2.32 0.10 16 27 C -0.23 -2.98 6.34 -37.89 -0.24 -3.22 16 28 H 0.07 0.78 7.99 -51.93 -0.41 0.36 16 29 H 0.08 0.91 5.87 -51.93 -0.30 0.61 16 30 H 0.07 0.76 7.78 -51.93 -0.40 0.35 16 31 H 0.09 1.67 7.78 -51.93 -0.40 1.26 16 32 H 0.08 1.53 7.50 -51.93 -0.39 1.14 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.35 7.80 -51.93 -0.41 0.94 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 2.06 6.95 -51.93 -0.36 1.70 16 37 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.21 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 40 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 349.02 15.07 5.26 5.26 Total: -1.00 -33.45 349.02 -10.43 -43.88 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -4.77 Total: -1.94 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -2.98 Total: 8.27 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -0.67 Total: -63.29 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.32 Total: 0.10 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.45 -10.43 -43.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085634604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.486 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds