Wall clock time and date at job start Tue Mar 31 2020 16:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.46494 * 119.99732 * 2 1 4 4 C 1.53003 * 109.47013 * 264.60364 * 3 2 1 5 5 H 1.08991 * 112.96519 * 290.00141 * 4 3 2 6 6 C 1.53943 * 113.76578 * 61.68502 * 4 3 2 7 7 C 1.53947 * 86.29139 * 137.90719 * 6 4 3 8 8 N 1.47583 * 86.11313 * 336.38626 * 7 6 4 9 9 C 1.36932 * 134.49230 * 204.63634 * 8 7 6 10 10 H 1.07999 * 120.00195 * 184.95467 * 9 8 7 11 11 C 1.38817 * 120.00262 * 4.95624 * 9 8 7 12 12 N 1.31628 * 119.99586 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00373 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47310 * 90.00422 * 13 11 9 15 15 H 1.48499 * 109.47395 * 210.00400 * 13 11 9 16 16 H 1.48503 * 109.47290 * 330.00189 * 13 11 9 17 17 C 1.34774 * 119.99600 * 179.72360 * 2 1 3 18 18 O 1.21512 * 119.99837 * 186.07805 * 17 2 1 19 19 C 1.48210 * 120.00596 * 6.07461 * 17 2 1 20 20 N 1.32983 * 120.60834 * 6.43746 * 19 17 2 21 21 C 1.31773 * 120.90252 * 180.02562 * 20 19 17 22 22 N 1.31191 * 122.65062 * 359.97386 * 21 20 19 23 23 C 1.34525 * 121.10296 * 0.02562 * 22 21 20 24 24 C 1.44799 * 130.27189 * 180.02562 * 23 22 21 25 25 C 1.32209 * 114.91151 * 180.02562 * 24 23 22 26 26 S 1.75375 * 111.45098 * 0.02562 * 25 24 23 27 27 C 1.40444 * 120.61521 * 186.15727 * 19 17 2 28 28 H 1.08996 * 109.46461 * 95.84857 * 1 2 3 29 29 H 1.09003 * 109.47099 * 215.84803 * 1 2 3 30 30 H 1.09000 * 109.46715 * 335.84887 * 1 2 3 31 31 H 1.08997 * 109.47388 * 24.60734 * 3 2 1 32 32 H 1.09000 * 109.46697 * 144.60619 * 3 2 1 33 33 H 1.09007 * 113.73576 * 252.24940 * 6 4 3 34 34 H 1.08996 * 113.74452 * 23.45085 * 6 4 3 35 35 H 1.08997 * 113.77268 * 90.69025 * 7 6 4 36 36 H 1.08999 * 113.76699 * 221.97772 * 7 6 4 37 37 H 0.96997 * 119.99846 * 179.97438 * 12 11 9 38 38 H 1.07997 * 118.67381 * 179.97438 * 21 20 19 39 39 H 1.07999 * 122.54229 * 0.02751 * 24 23 22 40 40 H 1.07996 * 124.27134 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5700 1.6426 -1.4361 5 1 3.3341 0.9914 -1.8605 6 6 1.3547 1.8554 -2.3569 7 6 2.1144 3.0741 -2.9114 8 7 2.8387 3.0813 -1.6255 9 6 3.4963 4.0384 -0.8998 10 1 4.0257 3.7644 0.0007 11 6 3.4823 5.3609 -1.3215 12 7 2.8365 5.6949 -2.4188 13 14 4.3786 6.6666 -0.3312 14 1 5.7760 6.7857 -0.8192 15 1 3.6861 7.9706 -0.4899 16 1 4.3863 6.2817 1.1031 17 6 2.1389 -1.1672 0.0056 18 8 3.3489 -1.1697 0.1171 19 6 1.4041 -2.4478 -0.1240 20 7 0.0980 -2.4568 -0.3738 21 6 -0.5611 -3.5919 -0.4897 22 7 0.0187 -4.7625 -0.3688 23 6 1.3361 -4.8627 -0.1159 24 6 2.1704 -6.0341 0.0532 25 6 3.4449 -5.7798 0.2956 26 16 3.7570 -4.0547 0.3427 27 6 2.0755 -3.6742 0.0089 28 1 -0.3632 -0.1047 -1.0223 29 1 -0.3633 -0.8330 0.6019 30 1 -0.3633 0.9377 0.4205 31 1 1.5701 2.0505 0.4279 32 1 3.1047 1.1645 0.5952 33 1 1.2120 1.0581 -3.0864 34 1 0.4396 2.1120 -1.8234 35 1 2.7456 2.8451 -3.7699 36 1 1.4850 3.9501 -3.0679 37 1 2.8264 6.6190 -2.7133 38 1 -1.6213 -3.5572 -0.6924 39 1 1.7809 -7.0392 -0.0136 40 1 4.1986 -6.5386 0.4457 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085634604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:11 Heat of formation + Delta-G solvation = 100.608529 kcal Electronic energy + Delta-G solvation = -25717.565064 eV Core-core repulsion = 22047.423961 eV Total energy + Delta-G solvation = -3670.141104 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.42501 -40.89957 -39.51612 -37.35379 -36.55952 -34.57348 -34.15689 -31.79433 -30.19390 -29.85934 -27.81944 -26.19144 -26.08236 -25.30401 -24.09928 -22.76655 -21.23492 -20.70617 -19.56283 -18.93279 -18.52152 -17.91471 -17.48548 -17.03715 -16.84644 -16.52753 -16.11162 -15.88403 -15.74613 -15.25942 -15.15096 -14.83325 -14.14248 -14.03931 -13.94973 -13.83308 -13.60050 -13.35373 -13.17768 -12.94027 -12.54338 -12.51451 -12.31138 -12.25993 -12.07388 -11.84854 -11.69955 -11.57317 -11.46333 -11.36502 -10.83856 -10.47836 -10.34846 -9.77302 -9.15847 -8.90923 -7.88538 -5.23936 -1.00352 -0.59858 0.23791 0.88089 0.90940 1.45242 1.47108 1.55167 1.57707 1.68172 2.46637 2.57561 2.63846 2.81303 3.10927 3.30312 3.42214 3.45732 3.80975 3.90366 4.07322 4.17436 4.25272 4.38782 4.51659 4.55669 4.67476 4.77450 4.83960 4.89478 4.92530 4.95013 5.02393 5.05584 5.19784 5.24614 5.40129 5.53700 5.56668 5.68326 5.95736 6.18108 6.70863 6.85557 6.93104 7.61452 8.57010 9.27073 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.022161 B = 0.002913 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.172026 B = 9609.001312 C =10329.067234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.575 5.575 3 C 0.132 3.868 4 C 0.130 3.870 5 H 0.029 0.971 6 C -0.121 4.121 7 C 0.147 3.853 8 N -0.625 5.625 9 C -0.232 4.232 10 H 0.079 0.921 11 C -0.064 4.064 12 N -0.951 5.951 13 Si 0.976 3.024 14 H -0.291 1.291 15 H -0.291 1.291 16 H -0.267 1.267 17 C 0.551 3.449 18 O -0.551 6.551 19 C 0.179 3.821 20 N -0.476 5.476 21 C 0.291 3.709 22 N -0.486 5.486 23 C 0.161 3.839 24 C -0.131 4.131 25 C -0.151 4.151 26 S 0.170 5.830 27 C -0.250 4.250 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.009 0.991 36 H 0.053 0.947 37 H 0.248 0.752 38 H 0.248 0.752 39 H 0.188 0.812 40 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.610 -25.950 6.173 27.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.305 5.305 3 C 0.009 3.991 4 C 0.023 3.977 5 H 0.046 0.954 6 C -0.159 4.159 7 C 0.022 3.978 8 N -0.352 5.352 9 C -0.361 4.361 10 H 0.097 0.903 11 C -0.257 4.257 12 N -0.600 5.600 13 Si 0.804 3.196 14 H -0.218 1.218 15 H -0.218 1.218 16 H -0.192 1.192 17 C 0.337 3.663 18 O -0.429 6.429 19 C 0.020 3.980 20 N -0.194 5.194 21 C 0.000 4.000 22 N -0.200 5.200 23 C 0.014 3.986 24 C -0.160 4.160 25 C -0.289 4.289 26 S 0.433 5.567 27 C -0.371 4.371 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.263 0.737 39 H 0.205 0.795 40 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -6.573 -24.792 6.382 26.431 hybrid contribution 0.433 0.444 -0.088 0.626 sum -6.141 -24.348 6.294 25.887 Atomic orbital electron populations 1.22357 0.75684 1.03556 1.03899 1.47709 1.09292 1.04293 1.69165 1.21546 0.96872 0.83710 0.97005 1.22571 0.94776 0.85589 0.94757 0.95354 1.23481 0.96951 0.97256 0.98204 1.22250 0.92056 0.96039 0.87472 1.46380 1.64250 1.03793 1.20759 1.19366 1.24905 0.87274 1.04511 0.90304 1.25586 1.02081 0.98903 0.99092 1.70008 1.47624 1.17111 1.25240 0.85119 0.77458 0.78425 0.78582 1.21817 1.21772 1.19151 1.18116 0.86430 0.83613 0.78132 1.90780 1.14279 1.86718 1.51133 1.20849 0.90727 0.91411 0.95032 1.68994 1.05653 1.32009 1.12705 1.25763 1.02461 0.80880 0.90846 1.68310 1.09126 1.30180 1.12401 1.20988 0.90386 0.91972 0.95255 1.20821 0.91612 0.98361 1.05217 1.26278 1.00701 1.00737 1.01189 1.85306 1.01122 0.99002 1.71316 1.24502 1.03011 0.98641 1.10976 0.90852 0.88561 0.90469 0.88864 0.92264 0.90959 0.88966 0.97335 0.92816 0.94257 0.73660 0.79531 0.76165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.91 8.45 127.77 1.08 2.99 16 2 N -0.57 -17.37 2.73 -849.76 -2.32 -19.68 16 3 C 0.13 4.86 5.39 86.38 0.47 5.33 16 4 C 0.13 5.53 4.57 45.09 0.21 5.74 16 5 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 6 C -0.12 -4.54 7.27 31.25 0.23 -4.31 16 7 C 0.15 7.20 7.64 86.48 0.66 7.86 16 8 N -0.63 -32.75 3.57 -694.18 -2.48 -35.23 16 9 C -0.23 -13.23 10.51 84.04 0.88 -12.34 16 10 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 11 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 12 N -0.95 -57.84 11.30 21.65 0.24 -57.59 16 13 Si 0.98 46.39 29.55 68.60 2.03 48.41 16 14 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 15 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 C 0.55 17.86 7.62 86.89 0.66 18.52 16 18 O -0.55 -21.10 14.87 -3.75 -0.06 -21.16 16 19 C 0.18 4.83 6.60 42.16 0.28 5.11 16 20 N -0.48 -10.28 6.40 -189.08 -1.21 -11.49 16 21 C 0.29 4.99 12.22 181.07 2.21 7.20 16 22 N -0.49 -9.73 10.49 -191.09 -2.00 -11.74 16 23 C 0.16 3.40 7.23 40.97 0.30 3.70 16 24 C -0.13 -1.84 10.39 22.92 0.24 -1.60 16 25 C -0.15 -1.85 11.03 66.79 0.74 -1.12 16 26 S 0.17 3.70 21.61 -56.49 -1.22 2.48 16 27 C -0.25 -6.28 6.34 23.36 0.15 -6.13 16 28 H 0.07 1.54 7.99 -2.39 -0.02 1.52 16 29 H 0.10 1.91 5.87 -2.39 -0.01 1.89 16 30 H 0.08 1.56 7.78 -2.39 -0.02 1.55 16 31 H 0.09 3.38 7.78 -2.39 -0.02 3.36 16 32 H 0.06 2.39 7.50 -2.39 -0.02 2.37 16 33 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 34 H 0.09 3.16 7.80 -2.39 -0.02 3.14 16 35 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.05 2.89 6.95 -2.39 -0.02 2.87 16 37 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 38 H 0.25 1.90 8.06 -2.91 -0.02 1.88 16 39 H 0.19 1.52 8.06 -2.91 -0.02 1.49 16 40 H 0.22 0.80 8.06 -2.91 -0.02 0.77 16 Total: -1.00 -75.14 349.02 2.62 -72.52 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 1.08 Total: 5.72 kcal Atomic # 6 Polarization: 19.19 SS G_CDS: 8.56 Total: 27.75 kcal Atomic # 7 Polarization: -127.97 SS G_CDS: -7.76 Total: -135.73 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.06 Total: -21.16 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.22 Total: 2.48 kcal Total: -75.14 2.62 -72.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085634604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.129 kcal (2) G-P(sol) polarization free energy of solvation -75.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds