Wall clock time and date at job start Tue Mar 31 2020 16:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46507 * 119.99952 * 2 1 4 4 C 1.53004 * 109.46800 * 263.56452 * 3 2 1 5 5 H 1.09005 * 112.96428 * 308.94216 * 4 3 2 6 6 C 1.53947 * 113.76641 * 177.26977 * 4 3 2 7 7 C 1.53945 * 86.28743 * 222.08710 * 6 4 3 8 8 N 1.47575 * 113.77147 * 80.77399 * 4 3 2 9 9 C 1.36935 * 134.49583 * 318.93902 * 8 4 3 10 10 H 1.08002 * 119.99598 * 333.16002 * 9 8 4 11 11 C 1.38809 * 120.00278 * 153.15380 * 9 8 4 12 12 N 1.31621 * 120.00209 * 166.84801 * 11 9 8 13 13 Si 1.86797 * 119.99951 * 346.85230 * 11 9 8 14 14 H 1.48498 * 109.47350 * 86.35818 * 13 11 9 15 15 H 1.48507 * 109.47263 * 206.35874 * 13 11 9 16 16 H 1.48502 * 109.47109 * 326.35505 * 13 11 9 17 17 C 1.34773 * 120.00482 * 179.97438 * 2 1 3 18 18 O 1.21547 * 120.00381 * 185.33354 * 17 2 1 19 19 C 1.47819 * 119.99854 * 5.33869 * 17 2 1 20 20 N 1.28943 * 124.85389 * 174.43147 * 19 17 2 21 21 C 1.33217 * 118.15630 * 179.97438 * 20 19 17 22 22 C 1.41661 * 129.11520 * 179.97438 * 21 20 19 23 23 C 1.36492 * 118.87817 * 180.02562 * 22 21 20 24 24 C 1.38792 * 119.89918 * 359.97438 * 23 22 21 25 25 N 1.31392 * 120.95881 * 0.28269 * 24 23 22 26 26 C 1.33044 * 121.81440 * 359.42840 * 25 24 23 27 27 S 1.75853 * 124.85233 * 354.39823 * 19 17 2 28 28 H 1.09003 * 109.46776 * 237.32042 * 1 2 3 29 29 H 1.08998 * 109.47250 * 357.32351 * 1 2 3 30 30 H 1.09005 * 109.46985 * 117.32572 * 1 2 3 31 31 H 1.09003 * 109.46957 * 23.55589 * 3 2 1 32 32 H 1.08998 * 109.47441 * 143.56022 * 3 2 1 33 33 H 1.08992 * 113.74218 * 336.43306 * 6 4 3 34 34 H 1.09007 * 113.73716 * 107.64100 * 6 4 3 35 35 H 1.09002 * 113.77103 * 137.90743 * 7 6 4 36 36 H 1.09002 * 113.77505 * 269.19067 * 7 6 4 37 37 H 0.96998 * 120.00532 * 179.97438 * 12 11 9 38 38 H 1.08000 * 120.55369 * 0.03888 * 22 21 20 39 39 H 1.07996 * 120.04998 * 179.97438 * 23 22 21 40 40 H 1.08002 * 119.51943 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5925 1.6296 -1.4335 5 1 3.0971 0.8151 -1.9533 6 6 3.3128 2.9846 -1.5562 7 6 2.4462 3.2187 -2.8068 8 7 1.5038 2.2513 -2.2119 9 6 0.1591 2.0225 -2.3335 10 1 -0.2388 1.0345 -2.1550 11 6 -0.6925 3.0605 -2.6861 12 7 -1.9290 2.8008 -3.0548 13 14 -0.0835 4.8257 -2.6372 14 1 0.5763 5.1576 -3.9255 15 1 -1.2333 5.7402 -2.4200 16 1 0.8904 4.9829 -1.5273 17 6 2.1389 -1.1671 0.0005 18 8 3.3504 -1.1693 0.0984 19 6 1.4047 -2.4446 -0.1180 20 7 1.9571 -3.6043 -0.2301 21 6 1.1650 -4.6710 -0.3279 22 6 1.5175 -6.0368 -0.4592 23 6 0.5239 -6.9688 -0.5438 24 6 -0.8047 -6.5696 -0.5000 25 7 -1.1257 -5.3008 -0.3831 26 6 -0.2008 -4.3489 -0.2908 27 16 -0.3469 -2.6000 -0.1255 28 1 -0.3633 -0.5549 0.8650 29 1 -0.3633 1.0265 0.0480 30 1 -0.3633 -0.4718 -0.9130 31 1 1.5633 2.0545 0.4107 32 1 3.0951 1.1701 0.6104 33 1 3.0973 3.6718 -0.7381 34 1 4.3784 2.8974 -1.7686 35 1 2.0479 4.2306 -2.8822 36 1 2.9075 2.8734 -3.7321 37 1 -2.5242 3.5261 -3.3008 38 1 2.5549 -6.3354 -0.4915 39 1 0.7711 -8.0152 -0.6448 40 1 -1.5860 -7.3121 -0.5679 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085643349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:34 Heat of formation + Delta-G solvation = 116.606561 kcal Electronic energy + Delta-G solvation = -25872.203546 eV Core-core repulsion = 22202.756169 eV Total energy + Delta-G solvation = -3669.447377 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.99819 -39.90968 -38.29420 -37.38744 -35.31290 -32.73186 -32.41054 -30.69735 -29.21778 -28.25029 -26.92755 -25.63466 -24.41860 -23.44996 -23.10760 -21.91189 -19.80002 -19.19486 -18.56076 -17.53652 -17.33358 -17.00009 -16.37316 -15.94977 -15.72902 -15.34233 -15.14030 -14.93646 -14.39143 -13.67610 -13.61031 -13.43821 -13.15941 -13.08738 -13.01543 -12.81144 -12.61197 -12.44193 -11.66891 -11.56182 -11.32366 -11.16496 -10.90940 -10.78104 -10.62692 -10.43707 -10.28511 -9.92122 -9.81644 -9.49489 -9.32476 -9.08317 -8.77598 -8.70798 -8.35519 -7.05822 -6.02454 -3.40678 -0.21561 0.76927 0.86532 1.48023 1.80431 2.68235 3.05231 3.29804 3.40448 3.43975 3.48468 3.83623 4.15461 4.33756 4.47434 4.53280 4.58838 4.61035 4.91611 5.17940 5.27255 5.28791 5.32550 5.50884 5.55679 5.67567 5.69705 5.74035 5.85462 6.00552 6.08587 6.11273 6.17663 6.29968 6.34121 6.39531 6.64208 6.99761 7.16606 7.30627 7.41126 7.46437 8.08624 8.26308 8.61286 9.56886 10.30853 11.13425 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.018737 B = 0.003539 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.019890 B = 7909.272226 C = 8903.672609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.581 5.581 3 C 0.123 3.877 4 C 0.130 3.870 5 H 0.059 0.941 6 C -0.146 4.146 7 C 0.098 3.902 8 N -0.617 5.617 9 C -0.237 4.237 10 H 0.092 0.908 11 C 0.028 3.972 12 N -0.911 5.911 13 Si 0.892 3.108 14 H -0.288 1.288 15 H -0.303 1.303 16 H -0.270 1.270 17 C 0.586 3.414 18 O -0.503 6.503 19 C 0.070 3.930 20 N -0.405 5.405 21 C 0.027 3.973 22 C -0.010 4.010 23 C -0.171 4.171 24 C 0.140 3.860 25 N -0.445 5.445 26 C -0.006 4.006 27 S 0.190 5.810 28 H 0.060 0.940 29 H 0.123 0.877 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.045 0.955 36 H 0.043 0.957 37 H 0.264 0.736 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.246 -13.922 7.999 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.313 5.313 3 C 0.000 4.000 4 C 0.022 3.978 5 H 0.076 0.924 6 C -0.184 4.184 7 C -0.026 4.026 8 N -0.346 5.346 9 C -0.364 4.364 10 H 0.109 0.891 11 C -0.171 4.171 12 N -0.555 5.555 13 Si 0.724 3.276 14 H -0.216 1.216 15 H -0.232 1.232 16 H -0.196 1.196 17 C 0.368 3.632 18 O -0.377 6.377 19 C -0.215 4.215 20 N -0.121 5.121 21 C -0.100 4.100 22 C -0.039 4.039 23 C -0.194 4.194 24 C -0.033 4.033 25 N -0.155 5.155 26 C -0.252 4.252 27 S 0.447 5.553 28 H 0.078 0.922 29 H 0.142 0.858 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.166 0.834 39 H 0.166 0.834 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.376 -12.782 8.088 15.498 hybrid contribution 1.123 -0.314 -0.533 1.282 sum 4.499 -13.096 7.555 15.774 Atomic orbital electron populations 1.22188 0.78665 1.06295 1.01270 1.47523 1.07560 1.05347 1.70875 1.22043 0.96772 0.82774 0.98413 1.22730 0.89199 0.94763 0.91081 0.92395 1.23589 0.97865 0.97632 0.99347 1.22812 0.90237 0.94842 0.94728 1.46266 1.02474 1.38624 1.47192 1.18698 0.78338 0.95598 1.43776 0.89074 1.25062 0.94828 0.97837 0.99418 1.69758 1.06196 1.32128 1.47387 0.86711 0.76684 0.85896 0.78342 1.21571 1.23153 1.19592 1.16820 0.86393 0.81246 0.78711 1.90808 1.12261 1.85877 1.48791 1.27224 0.93408 0.96363 1.04475 1.65617 1.37758 0.97082 1.11595 1.19938 0.88833 0.94424 1.06793 1.21024 1.01233 0.88554 0.93057 1.21729 0.93639 1.01106 1.02968 1.23062 0.95761 0.91830 0.92624 1.67260 1.35565 1.00515 1.12135 1.25968 0.92978 1.02201 1.04050 1.86199 1.05683 0.93364 1.70099 0.92193 0.85834 0.90291 0.88779 0.89903 0.90110 0.91987 0.93701 0.93974 0.92597 0.83447 0.83357 0.81258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.94 6.99 59.84 0.42 1.36 16 2 N -0.58 -9.67 2.89 -182.70 -0.53 -10.20 16 3 C 0.12 2.01 5.26 -4.04 -0.02 1.99 16 4 C 0.13 2.42 4.49 -66.86 -0.30 2.12 16 5 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 6 C -0.15 -2.44 7.86 -25.80 -0.20 -2.64 16 7 C 0.10 2.00 7.56 -2.98 -0.02 1.98 16 8 N -0.62 -13.83 3.19 -170.75 -0.54 -14.37 16 9 C -0.24 -6.06 9.62 -15.06 -0.14 -6.20 16 10 H 0.09 2.40 5.61 -52.49 -0.29 2.10 16 11 C 0.03 0.75 5.50 -17.43 -0.10 0.66 16 12 N -0.91 -26.31 13.97 55.49 0.78 -25.53 16 13 Si 0.89 21.54 24.77 -169.99 -4.21 17.33 16 14 H -0.29 -7.01 7.03 56.52 0.40 -6.62 16 15 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 16 H -0.27 -6.21 6.81 56.52 0.38 -5.83 16 17 C 0.59 10.43 7.63 -12.34 -0.09 10.34 16 18 O -0.50 -10.08 16.71 5.32 0.09 -10.00 16 19 C 0.07 1.18 7.29 -14.85 -0.11 1.07 16 20 N -0.41 -6.89 10.46 -8.52 -0.09 -6.98 16 21 C 0.03 0.39 6.95 -85.15 -0.59 -0.20 16 22 C -0.01 -0.11 10.18 -38.91 -0.40 -0.51 16 23 C -0.17 -1.38 10.00 -40.01 -0.40 -1.78 16 24 C 0.14 1.31 11.18 -17.53 -0.20 1.11 16 25 N -0.44 -6.00 10.39 -11.59 -0.12 -6.12 16 26 C -0.01 -0.09 7.72 -16.22 -0.13 -0.22 16 27 S 0.19 2.78 17.81 -107.50 -1.91 0.87 16 28 H 0.06 0.77 6.42 -42.90 -0.28 0.49 16 29 H 0.12 2.05 6.87 -51.93 -0.36 1.69 16 30 H 0.08 1.34 5.45 -42.61 -0.23 1.11 16 31 H 0.09 1.50 7.77 -51.93 -0.40 1.10 16 32 H 0.08 1.25 7.55 -51.93 -0.39 0.86 16 33 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.96 3.77 -51.93 -0.20 0.77 16 36 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 337.81 15.07 5.09 5.09 Total: -1.00 -33.21 337.81 -8.00 -41.21 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -4.26 Total: -0.39 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: -2.28 Total: 9.08 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: -0.51 Total: -63.20 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.21 Total: 17.33 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -1.91 Total: 0.87 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.21 -8.00 -41.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085643349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.817 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds