Wall clock time and date at job start Tue Mar 31 2020 16:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46507 * 119.99952 * 2 1 4 4 C 1.53004 * 109.46800 * 263.56452 * 3 2 1 5 5 H 1.09005 * 112.96428 * 308.94216 * 4 3 2 6 6 C 1.53947 * 113.76641 * 177.26977 * 4 3 2 7 7 C 1.53945 * 86.28743 * 222.08710 * 6 4 3 8 8 N 1.47575 * 113.77147 * 80.77399 * 4 3 2 9 9 C 1.36935 * 134.49583 * 318.93902 * 8 4 3 10 10 H 1.08002 * 119.99598 * 333.16002 * 9 8 4 11 11 C 1.38809 * 120.00278 * 153.15380 * 9 8 4 12 12 N 1.31621 * 120.00209 * 166.84801 * 11 9 8 13 13 Si 1.86797 * 119.99951 * 346.85230 * 11 9 8 14 14 H 1.48498 * 109.47350 * 86.35818 * 13 11 9 15 15 H 1.48507 * 109.47263 * 206.35874 * 13 11 9 16 16 H 1.48502 * 109.47109 * 326.35505 * 13 11 9 17 17 C 1.34773 * 120.00482 * 179.97438 * 2 1 3 18 18 O 1.21547 * 120.00381 * 185.33354 * 17 2 1 19 19 C 1.47819 * 119.99854 * 5.33869 * 17 2 1 20 20 N 1.28943 * 124.85389 * 174.43147 * 19 17 2 21 21 C 1.33217 * 118.15630 * 179.97438 * 20 19 17 22 22 C 1.41661 * 129.11520 * 179.97438 * 21 20 19 23 23 C 1.36492 * 118.87817 * 180.02562 * 22 21 20 24 24 C 1.38792 * 119.89918 * 359.97438 * 23 22 21 25 25 N 1.31392 * 120.95881 * 0.28269 * 24 23 22 26 26 C 1.33044 * 121.81440 * 359.42840 * 25 24 23 27 27 S 1.75853 * 124.85233 * 354.39823 * 19 17 2 28 28 H 1.09003 * 109.46776 * 237.32042 * 1 2 3 29 29 H 1.08998 * 109.47250 * 357.32351 * 1 2 3 30 30 H 1.09005 * 109.46985 * 117.32572 * 1 2 3 31 31 H 1.09003 * 109.46957 * 23.55589 * 3 2 1 32 32 H 1.08998 * 109.47441 * 143.56022 * 3 2 1 33 33 H 1.08992 * 113.74218 * 336.43306 * 6 4 3 34 34 H 1.09007 * 113.73716 * 107.64100 * 6 4 3 35 35 H 1.09002 * 113.77103 * 137.90743 * 7 6 4 36 36 H 1.09002 * 113.77505 * 269.19067 * 7 6 4 37 37 H 0.96998 * 120.00532 * 179.97438 * 12 11 9 38 38 H 1.08000 * 120.55369 * 0.03888 * 22 21 20 39 39 H 1.07996 * 120.04998 * 179.97438 * 23 22 21 40 40 H 1.08002 * 119.51943 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5925 1.6296 -1.4335 5 1 3.0971 0.8151 -1.9533 6 6 3.3128 2.9846 -1.5562 7 6 2.4462 3.2187 -2.8068 8 7 1.5038 2.2513 -2.2119 9 6 0.1591 2.0225 -2.3335 10 1 -0.2388 1.0345 -2.1550 11 6 -0.6925 3.0605 -2.6861 12 7 -1.9290 2.8008 -3.0548 13 14 -0.0835 4.8257 -2.6372 14 1 0.5763 5.1576 -3.9255 15 1 -1.2333 5.7402 -2.4200 16 1 0.8904 4.9829 -1.5273 17 6 2.1389 -1.1671 0.0005 18 8 3.3504 -1.1693 0.0984 19 6 1.4047 -2.4446 -0.1180 20 7 1.9571 -3.6043 -0.2301 21 6 1.1650 -4.6710 -0.3279 22 6 1.5175 -6.0368 -0.4592 23 6 0.5239 -6.9688 -0.5438 24 6 -0.8047 -6.5696 -0.5000 25 7 -1.1257 -5.3008 -0.3831 26 6 -0.2008 -4.3489 -0.2908 27 16 -0.3469 -2.6000 -0.1255 28 1 -0.3633 -0.5549 0.8650 29 1 -0.3633 1.0265 0.0480 30 1 -0.3633 -0.4718 -0.9130 31 1 1.5633 2.0545 0.4107 32 1 3.0951 1.1701 0.6104 33 1 3.0973 3.6718 -0.7381 34 1 4.3784 2.8974 -1.7686 35 1 2.0479 4.2306 -2.8822 36 1 2.9075 2.8734 -3.7321 37 1 -2.5242 3.5261 -3.3008 38 1 2.5549 -6.3354 -0.4915 39 1 0.7711 -8.0152 -0.6448 40 1 -1.5860 -7.3121 -0.5679 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085643349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:33 Heat of formation + Delta-G solvation = 92.295289 kcal Electronic energy + Delta-G solvation = -25873.257762 eV Core-core repulsion = 22202.756169 eV Total energy + Delta-G solvation = -3670.501593 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.01014 -41.23897 -39.78807 -38.49355 -36.69944 -34.39365 -33.58526 -31.81973 -30.69443 -29.84454 -28.20709 -26.88758 -25.43719 -25.07127 -24.45826 -23.07121 -21.05916 -20.70951 -19.73057 -19.03964 -18.57745 -18.29634 -17.46581 -17.36207 -17.03237 -16.78856 -16.36910 -16.03486 -15.76168 -15.30150 -14.90125 -14.86764 -14.43822 -14.38393 -14.30285 -14.10960 -13.74492 -13.69248 -13.14542 -13.02139 -12.79066 -12.67247 -12.56785 -12.17267 -12.06890 -11.71147 -11.64151 -11.52684 -11.29307 -11.11056 -10.68707 -10.36579 -10.16087 -9.92561 -9.59027 -8.91779 -8.08368 -5.42641 -1.27229 -0.24213 -0.08369 0.37979 0.71862 1.36444 1.42354 1.44145 1.53715 1.80798 2.49806 2.56033 2.70318 2.95144 3.19462 3.26721 3.39953 3.55008 3.79354 3.85464 4.01282 4.14745 4.27016 4.29501 4.36845 4.46600 4.47538 4.61604 4.62867 4.74378 4.77302 4.86086 4.87158 4.95980 5.01280 5.26995 5.39358 5.46673 5.60360 5.95896 6.20078 6.26623 6.54588 6.62773 6.73690 7.54621 8.39857 9.11133 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.018737 B = 0.003539 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.019890 B = 7909.272226 C = 8903.672609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.581 5.581 3 C 0.124 3.876 4 C 0.128 3.872 5 H 0.044 0.956 6 C -0.120 4.120 7 C 0.085 3.915 8 N -0.639 5.639 9 C -0.213 4.213 10 H 0.074 0.926 11 C -0.029 4.029 12 N -0.958 5.958 13 Si 0.944 3.056 14 H -0.293 1.293 15 H -0.315 1.315 16 H -0.248 1.248 17 C 0.588 3.412 18 O -0.533 6.533 19 C 0.039 3.961 20 N -0.421 5.421 21 C -0.004 4.004 22 C -0.019 4.019 23 C -0.146 4.146 24 C 0.151 3.849 25 N -0.478 5.478 26 C -0.021 4.021 27 S 0.194 5.806 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.037 0.963 36 H 0.047 0.953 37 H 0.259 0.741 38 H 0.168 0.832 39 H 0.201 0.799 40 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.473 -15.991 8.869 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.312 5.312 3 C 0.002 3.998 4 C 0.022 3.978 5 H 0.061 0.939 6 C -0.159 4.159 7 C -0.039 4.039 8 N -0.368 5.368 9 C -0.341 4.341 10 H 0.091 0.909 11 C -0.224 4.224 12 N -0.606 5.606 13 Si 0.775 3.225 14 H -0.220 1.220 15 H -0.244 1.244 16 H -0.172 1.172 17 C 0.371 3.629 18 O -0.410 6.410 19 C -0.244 4.244 20 N -0.137 5.137 21 C -0.131 4.131 22 C -0.047 4.047 23 C -0.168 4.168 24 C -0.021 4.021 25 N -0.189 5.189 26 C -0.266 4.266 27 S 0.450 5.550 28 H 0.104 0.896 29 H 0.130 0.870 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.186 0.814 39 H 0.218 0.782 40 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 4.648 -14.839 8.979 17.956 hybrid contribution 0.724 -0.056 -0.855 1.122 sum 5.372 -14.895 8.124 17.796 Atomic orbital electron populations 1.22104 0.78163 1.05708 1.01670 1.47576 1.07869 1.05339 1.70383 1.22044 0.97694 0.82863 0.97219 1.22797 0.87921 0.95528 0.91597 0.93861 1.23452 0.99030 0.95769 0.97612 1.23022 0.90472 0.93720 0.96687 1.46554 1.02102 1.39386 1.48758 1.18720 0.80055 0.94691 1.40667 0.90900 1.25596 0.95050 1.01082 1.00626 1.69884 1.07627 1.32650 1.50395 0.85876 0.76063 0.81886 0.78692 1.22034 1.24404 1.17222 1.16974 0.86136 0.81817 0.77969 1.90764 1.13368 1.86477 1.50436 1.26903 0.94352 0.96022 1.07156 1.65593 1.39066 0.97747 1.11292 1.20392 0.88689 0.95505 1.08481 1.21497 1.03279 0.87154 0.92767 1.22304 0.92194 1.02965 0.99382 1.24001 0.97884 0.91019 0.89209 1.67317 1.35647 1.01942 1.14033 1.25959 0.93497 1.02202 1.04939 1.85908 1.04196 0.94743 1.70148 0.89613 0.87047 0.92004 0.88078 0.88104 0.88539 0.88673 0.94472 0.93496 0.93188 0.81411 0.78171 0.76851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.19 6.99 127.77 0.89 3.08 16 2 N -0.58 -19.63 2.89 -850.22 -2.46 -22.09 16 3 C 0.12 3.97 5.26 86.38 0.45 4.42 16 4 C 0.13 4.64 4.49 45.10 0.20 4.84 16 5 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 6 C -0.12 -3.66 7.86 31.25 0.25 -3.42 16 7 C 0.09 3.32 7.56 86.48 0.65 3.97 16 8 N -0.64 -28.36 3.19 -694.12 -2.21 -30.57 16 9 C -0.21 -11.09 9.62 84.03 0.81 -10.28 16 10 H 0.07 4.00 5.61 -2.91 -0.02 3.98 16 11 C -0.03 -1.60 5.50 84.86 0.47 -1.13 16 12 N -0.96 -57.33 13.97 21.65 0.30 -57.03 16 13 Si 0.94 44.76 24.77 68.60 1.70 46.46 16 14 H -0.29 -13.91 7.03 99.48 0.70 -13.21 16 15 H -0.31 -15.39 7.11 99.48 0.71 -14.68 16 16 H -0.25 -10.68 6.81 99.48 0.68 -10.01 16 17 C 0.59 21.49 7.63 86.78 0.66 22.16 16 18 O -0.53 -21.80 16.71 -3.86 -0.06 -21.87 16 19 C 0.04 1.37 7.29 87.65 0.64 2.01 16 20 N -0.42 -14.64 10.46 -180.88 -1.89 -16.53 16 21 C 0.00 -0.13 6.95 40.30 0.28 0.15 16 22 C -0.02 -0.35 10.18 22.71 0.23 -0.12 16 23 C -0.15 -1.69 10.00 21.99 0.22 -1.47 16 24 C 0.15 2.23 11.18 84.89 0.95 3.18 16 25 N -0.48 -12.13 10.39 -190.60 -1.98 -14.11 16 26 C -0.02 -0.62 7.72 85.03 0.66 0.03 16 27 S 0.19 5.91 17.81 -56.49 -1.01 4.90 16 28 H 0.09 2.27 6.42 -8.12 -0.05 2.22 16 29 H 0.11 3.84 6.87 -2.39 -0.02 3.82 16 30 H 0.06 2.23 5.45 -8.31 -0.05 2.18 16 31 H 0.10 3.10 7.77 -2.39 -0.02 3.08 16 32 H 0.10 2.89 7.55 -2.39 -0.02 2.88 16 33 H 0.10 2.69 8.10 -2.39 -0.02 2.67 16 34 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.04 1.52 3.77 -2.39 -0.01 1.51 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 38 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.20 0.27 8.06 -2.91 -0.02 0.25 16 40 H 0.22 1.13 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -75.91 337.81 0.74 -75.17 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 0.99 Total: 8.22 kcal Atomic # 6 Polarization: 20.08 SS G_CDS: 7.36 Total: 27.44 kcal Atomic # 7 Polarization: -132.08 SS G_CDS: -8.24 Total: -140.32 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.06 Total: -21.87 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.70 Total: 46.46 kcal Atomic # 16 Polarization: 5.91 SS G_CDS: -1.01 Total: 4.90 kcal Total: -75.91 0.74 -75.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085643349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.465 kcal (2) G-P(sol) polarization free energy of solvation -75.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds