Wall clock time and date at job start Tue Mar 31 2020 16:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 120.00047 * 2 1 4 4 C 1.53000 * 109.47379 * 275.53112 * 3 2 1 5 5 H 1.08995 * 112.96626 * 65.73015 * 4 3 2 6 6 C 1.53946 * 113.76477 * 294.05844 * 4 3 2 7 7 C 1.53954 * 86.29100 * 222.08937 * 6 4 3 8 8 N 1.47580 * 113.77015 * 197.56167 * 4 3 2 9 9 C 1.36931 * 134.49295 * 318.93582 * 8 4 3 10 10 H 1.07999 * 120.00052 * 6.01504 * 9 8 4 11 11 C 1.38817 * 120.00054 * 186.00900 * 9 8 4 12 12 N 1.31624 * 120.00069 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00155 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.46868 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47066 * 120.00155 * 13 11 9 16 16 H 1.48502 * 109.47331 * 240.00288 * 13 11 9 17 17 C 1.34775 * 119.99846 * 180.02562 * 2 1 3 18 18 O 1.21621 * 119.99713 * 184.79244 * 17 2 1 19 19 C 1.47308 * 120.00046 * 4.80003 * 17 2 1 20 20 C 1.38361 * 120.57224 * 312.43454 * 19 17 2 21 21 C 1.38867 * 121.16007 * 180.02562 * 20 19 17 22 22 C 1.35577 * 122.42852 * 359.97438 * 21 20 19 23 23 C 1.41633 * 120.90213 * 0.02562 * 22 21 20 24 24 N 1.32404 * 131.03417 * 180.02562 * 23 22 21 25 25 S 1.55547 * 109.37410 * 179.97438 * 24 23 22 26 26 N 1.55550 * 100.17795 * 0.02562 * 25 24 23 27 27 C 1.31849 * 109.44760 * 0.02562 * 26 25 24 28 28 H 1.09007 * 109.46953 * 265.15826 * 1 2 3 29 29 H 1.08999 * 109.47444 * 25.15567 * 1 2 3 30 30 H 1.08998 * 109.47746 * 145.15960 * 1 2 3 31 31 H 1.09004 * 109.47192 * 35.52654 * 3 2 1 32 32 H 1.09000 * 109.47430 * 155.52747 * 3 2 1 33 33 H 1.08998 * 113.74318 * 336.42978 * 6 4 3 34 34 H 1.08998 * 113.74458 * 107.64107 * 6 4 3 35 35 H 1.08991 * 113.77030 * 137.90556 * 7 6 4 36 36 H 1.09001 * 113.76626 * 269.19792 * 7 6 4 37 37 H 0.96990 * 119.99942 * 179.97438 * 12 11 9 38 38 H 1.08004 * 119.42162 * 0.04611 * 20 19 17 39 39 H 1.08003 * 118.78393 * 179.97438 * 21 20 19 40 40 H 1.07997 * 119.54242 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3321 1.7799 -1.4358 5 1 1.3750 2.0472 -1.8835 6 6 3.2089 0.8872 -2.3325 7 6 3.8072 2.1960 -2.8795 8 7 3.3786 2.8065 -1.6060 9 6 3.7876 3.8903 -0.8757 10 1 3.3607 4.0771 0.0986 11 6 4.7509 4.7487 -1.3876 12 7 5.2709 4.5212 -2.5752 13 14 5.3094 6.2266 -0.3911 14 1 4.5775 6.2578 0.9007 15 1 6.7680 6.1256 -0.1309 16 1 5.0271 7.4711 -1.1506 17 6 2.1388 -1.1672 -0.0005 18 8 3.3519 -1.1691 0.0875 19 6 1.4061 -2.4406 -0.1078 20 6 0.2975 -2.6835 0.6836 21 6 -0.4019 -3.8798 0.5928 22 6 -0.0454 -4.8671 -0.2651 23 6 1.0744 -4.7191 -1.1196 24 7 1.5949 -5.5383 -2.0202 25 16 2.8334 -4.8638 -2.6766 26 7 2.8433 -3.5074 -1.9152 27 6 1.8422 -3.4779 -1.0578 28 1 -0.3633 -0.0867 1.0241 29 1 -0.3634 0.9302 -0.4368 30 1 -0.3634 -0.8434 -0.5871 31 1 1.6548 2.0016 0.5972 32 1 3.1892 1.1157 0.4257 33 1 3.9224 0.2760 -1.7798 34 1 2.6446 0.3183 -3.0714 35 1 4.8889 2.1641 -3.0093 36 1 3.2853 2.5861 -3.7533 37 1 5.9437 5.1212 -2.9330 38 1 -0.0299 -1.9294 1.3840 39 1 -1.2616 -4.0291 1.2293 40 1 -0.6232 -5.7790 -0.2974 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085901401.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:21 Heat of formation + Delta-G solvation = 119.007395 kcal Electronic energy + Delta-G solvation = -25957.744167 eV Core-core repulsion = 22288.400898 eV Total energy + Delta-G solvation = -3669.343269 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.14785 -39.61094 -37.63972 -36.57481 -35.13367 -33.96672 -32.10849 -30.90344 -28.29572 -27.90223 -27.74237 -26.41968 -23.62931 -23.15911 -22.73650 -21.83973 -19.98351 -19.05180 -18.85272 -18.07569 -16.79796 -16.61363 -16.41776 -15.94995 -15.61798 -15.44758 -15.15113 -14.58392 -13.96976 -13.69576 -13.49591 -13.21953 -12.94026 -12.64478 -12.35447 -12.23061 -12.13601 -11.99931 -11.83094 -11.63865 -11.32572 -11.18130 -10.97845 -10.95220 -10.80848 -10.63721 -10.34965 -9.83274 -9.70026 -9.59318 -9.40375 -9.02029 -8.73013 -8.65353 -8.30944 -6.77982 -5.69282 -3.00909 -0.47458 1.10525 1.20409 1.30133 1.52081 2.72009 2.99793 3.37868 3.43399 3.48021 3.50976 3.86214 4.39785 4.48303 4.51484 4.56975 4.75678 4.83135 5.10073 5.28018 5.34611 5.38295 5.51021 5.52777 5.65726 5.66119 5.82294 5.91471 5.92972 5.96373 6.02405 6.17966 6.45546 6.53044 6.61591 6.75680 6.83874 6.88807 7.35819 7.50186 7.62018 7.68974 8.06451 8.34505 9.12073 9.78769 10.70408 11.48552 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.020161 B = 0.003121 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.467509 B = 8970.160932 C = 9898.301486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.603 5.603 3 C 0.116 3.884 4 C 0.128 3.872 5 H 0.041 0.959 6 C -0.156 4.156 7 C 0.166 3.834 8 N -0.599 5.599 9 C -0.222 4.222 10 H 0.079 0.921 11 C -0.008 4.008 12 N -0.919 5.919 13 Si 0.909 3.091 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.558 3.442 18 O -0.507 6.507 19 C -0.059 4.059 20 C -0.068 4.068 21 C -0.099 4.099 22 C -0.050 4.050 23 C 0.075 3.925 24 N -0.597 5.597 25 S 0.796 5.204 26 N -0.563 5.563 27 C 0.106 3.894 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.252 0.748 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.937 -21.031 3.986 26.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.336 5.336 3 C -0.007 4.007 4 C 0.020 3.980 5 H 0.058 0.942 6 C -0.195 4.195 7 C 0.040 3.960 8 N -0.326 5.326 9 C -0.349 4.349 10 H 0.097 0.903 11 C -0.204 4.204 12 N -0.566 5.566 13 Si 0.740 3.260 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.219 1.219 17 C 0.345 3.655 18 O -0.381 6.381 19 C -0.069 4.069 20 C -0.093 4.093 21 C -0.124 4.124 22 C -0.075 4.075 23 C -0.085 4.085 24 N -0.448 5.448 25 S 0.844 5.156 26 N -0.412 5.412 27 C -0.056 4.056 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.165 0.835 39 H 0.161 0.839 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.614 -21.504 2.420 25.048 hybrid contribution -0.967 1.612 1.604 2.471 sum -13.581 -19.892 4.025 24.420 Atomic orbital electron populations 1.21999 0.80084 1.03711 1.01296 1.47696 1.06719 1.06151 1.73077 1.21862 0.97913 0.81987 0.98904 1.22509 0.93024 0.89593 0.92896 0.94213 1.23788 0.99462 0.97469 0.98735 1.22090 0.99313 0.86263 0.88287 1.45964 1.34405 1.29861 1.22330 1.19033 1.17943 1.00092 0.97870 0.90326 1.24804 0.99986 0.98918 0.96742 1.69855 1.31055 1.38625 1.17079 0.86089 0.78308 0.82647 0.78968 1.20474 1.21762 1.21852 1.17818 0.87176 0.82918 0.77619 1.90859 1.13042 1.86594 1.47617 1.20283 0.96513 0.93267 0.96883 1.21447 0.92299 0.97973 0.97545 1.20562 1.00460 0.92638 0.98704 1.20273 0.93352 1.00211 0.93636 1.21220 0.99741 0.89875 0.97683 1.72234 1.18519 1.36478 1.17524 1.78748 1.14767 0.92938 1.29191 1.72106 1.25826 1.27732 1.15525 1.21960 0.91477 0.95441 0.96677 0.92467 0.90472 0.91207 0.91174 0.88668 0.89769 0.94154 0.91698 0.95700 0.93781 0.83484 0.83913 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 9.05 59.85 0.54 1.25 16 2 N -0.60 -8.97 2.80 -182.89 -0.51 -9.48 16 3 C 0.12 2.14 5.41 -4.04 -0.02 2.12 16 4 C 0.13 2.72 4.58 -66.86 -0.31 2.42 16 5 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.16 -3.43 7.31 -25.80 -0.19 -3.62 16 7 C 0.17 4.25 7.38 -2.96 -0.02 4.23 16 8 N -0.60 -15.94 3.57 -170.72 -0.61 -16.54 16 9 C -0.22 -6.33 10.51 -15.06 -0.16 -6.49 16 10 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 11 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 12 N -0.92 -28.26 11.55 55.49 0.64 -27.62 16 13 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 16 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 17 C 0.56 9.25 6.84 -12.57 -0.09 9.16 16 18 O -0.51 -10.71 15.31 5.26 0.08 -10.63 16 19 C -0.06 -0.77 5.14 -102.50 -0.53 -1.30 16 20 C -0.07 -0.58 7.68 -39.30 -0.30 -0.88 16 21 C -0.10 -0.62 9.82 -40.30 -0.40 -1.02 16 22 C -0.05 -0.40 10.03 -39.24 -0.39 -0.80 16 23 C 0.07 0.87 7.17 -83.18 -0.60 0.27 16 24 N -0.60 -6.89 11.45 25.61 0.29 -6.60 16 25 S 0.80 8.41 23.60 -107.50 -2.54 5.87 16 26 N -0.56 -8.47 11.42 26.55 0.30 -8.16 16 27 C 0.11 1.50 7.12 -81.05 -0.58 0.92 16 28 H 0.06 0.40 7.06 -51.93 -0.37 0.03 16 29 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 30 H 0.07 0.59 6.19 -51.93 -0.32 0.27 16 31 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 32 H 0.09 2.07 7.21 -51.93 -0.37 1.69 16 33 H 0.08 2.01 6.86 -51.93 -0.36 1.65 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.83 7.44 -51.93 -0.39 1.44 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.15 0.89 6.13 -52.48 -0.32 0.57 16 39 H 0.14 0.38 8.06 -52.48 -0.42 -0.05 16 40 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 347.80 15.07 5.24 5.24 Total: -1.00 -37.60 347.80 -9.88 -47.47 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -4.62 Total: -3.13 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -3.13 Total: 5.94 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: 0.12 Total: -68.40 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.63 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Atomic # 16 Polarization: 8.41 SS G_CDS: -2.54 Total: 5.87 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.60 -9.88 -47.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085901401.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.478 kcal (2) G-P(sol) polarization free energy of solvation -37.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds