Wall clock time and date at job start Tue Mar 31 2020 16:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 120.00047 * 2 1 4 4 C 1.53000 * 109.47379 * 275.53112 * 3 2 1 5 5 H 1.08995 * 112.96626 * 65.73015 * 4 3 2 6 6 C 1.53946 * 113.76477 * 294.05844 * 4 3 2 7 7 C 1.53954 * 86.29100 * 222.08937 * 6 4 3 8 8 N 1.47580 * 113.77015 * 197.56167 * 4 3 2 9 9 C 1.36931 * 134.49295 * 318.93582 * 8 4 3 10 10 H 1.07999 * 120.00052 * 6.01504 * 9 8 4 11 11 C 1.38817 * 120.00054 * 186.00900 * 9 8 4 12 12 N 1.31624 * 120.00069 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00155 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.46868 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47066 * 120.00155 * 13 11 9 16 16 H 1.48502 * 109.47331 * 240.00288 * 13 11 9 17 17 C 1.34775 * 119.99846 * 180.02562 * 2 1 3 18 18 O 1.21621 * 119.99713 * 184.79244 * 17 2 1 19 19 C 1.47308 * 120.00046 * 4.80003 * 17 2 1 20 20 C 1.38361 * 120.57224 * 312.43454 * 19 17 2 21 21 C 1.38867 * 121.16007 * 180.02562 * 20 19 17 22 22 C 1.35577 * 122.42852 * 359.97438 * 21 20 19 23 23 C 1.41633 * 120.90213 * 0.02562 * 22 21 20 24 24 N 1.32404 * 131.03417 * 180.02562 * 23 22 21 25 25 S 1.55547 * 109.37410 * 179.97438 * 24 23 22 26 26 N 1.55550 * 100.17795 * 0.02562 * 25 24 23 27 27 C 1.31849 * 109.44760 * 0.02562 * 26 25 24 28 28 H 1.09007 * 109.46953 * 265.15826 * 1 2 3 29 29 H 1.08999 * 109.47444 * 25.15567 * 1 2 3 30 30 H 1.08998 * 109.47746 * 145.15960 * 1 2 3 31 31 H 1.09004 * 109.47192 * 35.52654 * 3 2 1 32 32 H 1.09000 * 109.47430 * 155.52747 * 3 2 1 33 33 H 1.08998 * 113.74318 * 336.42978 * 6 4 3 34 34 H 1.08998 * 113.74458 * 107.64107 * 6 4 3 35 35 H 1.08991 * 113.77030 * 137.90556 * 7 6 4 36 36 H 1.09001 * 113.76626 * 269.19792 * 7 6 4 37 37 H 0.96990 * 119.99942 * 179.97438 * 12 11 9 38 38 H 1.08004 * 119.42162 * 0.04611 * 20 19 17 39 39 H 1.08003 * 118.78393 * 179.97438 * 21 20 19 40 40 H 1.07997 * 119.54242 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3321 1.7799 -1.4358 5 1 1.3750 2.0472 -1.8835 6 6 3.2089 0.8872 -2.3325 7 6 3.8072 2.1960 -2.8795 8 7 3.3786 2.8065 -1.6060 9 6 3.7876 3.8903 -0.8757 10 1 3.3607 4.0771 0.0986 11 6 4.7509 4.7487 -1.3876 12 7 5.2709 4.5212 -2.5752 13 14 5.3094 6.2266 -0.3911 14 1 4.5775 6.2578 0.9007 15 1 6.7680 6.1256 -0.1309 16 1 5.0271 7.4711 -1.1506 17 6 2.1388 -1.1672 -0.0005 18 8 3.3519 -1.1691 0.0875 19 6 1.4061 -2.4406 -0.1078 20 6 0.2975 -2.6835 0.6836 21 6 -0.4019 -3.8798 0.5928 22 6 -0.0454 -4.8671 -0.2651 23 6 1.0744 -4.7191 -1.1196 24 7 1.5949 -5.5383 -2.0202 25 16 2.8334 -4.8638 -2.6766 26 7 2.8433 -3.5074 -1.9152 27 6 1.8422 -3.4779 -1.0578 28 1 -0.3633 -0.0867 1.0241 29 1 -0.3634 0.9302 -0.4368 30 1 -0.3634 -0.8434 -0.5871 31 1 1.6548 2.0016 0.5972 32 1 3.1892 1.1157 0.4257 33 1 3.9224 0.2760 -1.7798 34 1 2.6446 0.3183 -3.0714 35 1 4.8889 2.1641 -3.0093 36 1 3.2853 2.5861 -3.7533 37 1 5.9437 5.1212 -2.9330 38 1 -0.0299 -1.9294 1.3840 39 1 -1.2616 -4.0291 1.2293 40 1 -0.6232 -5.7790 -0.2974 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085901401.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:21 Heat of formation + Delta-G solvation = 91.893263 kcal Electronic energy + Delta-G solvation = -25958.919924 eV Core-core repulsion = 22288.400898 eV Total energy + Delta-G solvation = -3670.519026 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.01014 -40.85807 -39.41470 -37.37258 -36.36727 -34.84213 -34.23567 -31.84376 -29.88060 -29.59047 -28.68105 -27.41725 -25.36297 -24.87030 -23.49512 -23.16319 -21.01068 -20.77315 -19.95652 -18.97017 -18.59962 -17.68844 -17.58101 -17.04359 -16.82517 -16.69324 -16.24162 -15.92883 -15.83077 -15.22764 -14.89668 -14.18479 -14.01518 -13.95837 -13.66880 -13.37866 -13.25864 -13.00399 -12.96995 -12.79323 -12.69287 -12.60033 -12.54579 -12.45645 -12.26222 -12.03308 -11.85359 -11.83712 -11.61646 -11.29077 -10.88178 -10.84862 -9.78376 -9.66190 -9.40727 -8.90428 -7.90231 -5.23823 -1.24460 0.36783 0.39634 0.45379 0.71218 1.43814 1.46561 1.56200 1.62459 1.99400 2.48094 2.53607 3.00965 3.29879 3.39758 3.57160 3.79279 3.87898 3.94676 4.02215 4.18600 4.23029 4.29594 4.37156 4.43497 4.63132 4.71008 4.77445 4.82915 4.88345 4.97011 4.98649 5.06998 5.19424 5.21748 5.27324 5.34178 5.47396 5.53237 5.69012 5.82773 5.91766 6.41467 6.90238 7.17939 7.60925 8.57480 9.28493 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.020161 B = 0.003121 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.467509 B = 8970.160932 C = 9898.301486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.600 5.600 3 C 0.131 3.869 4 C 0.137 3.863 5 H 0.063 0.937 6 C -0.131 4.131 7 C 0.163 3.837 8 N -0.626 5.626 9 C -0.227 4.227 10 H 0.091 0.909 11 C -0.074 4.074 12 N -0.959 5.959 13 Si 0.980 3.020 14 H -0.259 1.259 15 H -0.297 1.297 16 H -0.291 1.291 17 C 0.556 3.444 18 O -0.572 6.572 19 C -0.111 4.111 20 C -0.026 4.026 21 C -0.084 4.084 22 C -0.045 4.045 23 C 0.063 3.937 24 N -0.604 5.604 25 S 0.830 5.170 26 N -0.628 5.628 27 C 0.086 3.914 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.027 0.973 36 H 0.022 0.978 37 H 0.247 0.753 38 H 0.179 0.821 39 H 0.197 0.803 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.340 -22.243 6.365 30.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.332 5.332 3 C 0.006 3.994 4 C 0.031 3.969 5 H 0.080 0.920 6 C -0.170 4.170 7 C 0.037 3.963 8 N -0.353 5.353 9 C -0.355 4.355 10 H 0.109 0.891 11 C -0.267 4.267 12 N -0.608 5.608 13 Si 0.809 3.191 14 H -0.183 1.183 15 H -0.225 1.225 16 H -0.218 1.218 17 C 0.345 3.655 18 O -0.451 6.451 19 C -0.121 4.121 20 C -0.051 4.051 21 C -0.108 4.108 22 C -0.070 4.070 23 C -0.097 4.097 24 N -0.455 5.455 25 S 0.879 5.121 26 N -0.477 5.477 27 C -0.075 4.075 28 H 0.114 0.886 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.040 0.960 37 H 0.055 0.945 38 H 0.196 0.804 39 H 0.214 0.786 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -17.100 -22.747 4.816 28.862 hybrid contribution 0.285 1.842 0.880 2.061 sum -16.814 -20.904 5.696 27.425 Atomic orbital electron populations 1.22399 0.76427 1.04802 1.04220 1.47725 1.08771 1.04315 1.72379 1.21393 0.97094 0.84268 0.96612 1.22651 0.92408 0.87095 0.94768 0.92011 1.23452 0.98982 0.95785 0.98751 1.21985 0.97207 0.88567 0.88556 1.46269 1.36310 1.30307 1.22411 1.19499 1.17487 1.00060 0.98473 0.89098 1.25729 1.00654 1.02202 0.98069 1.70060 1.31947 1.39765 1.19058 0.84976 0.77286 0.78662 0.78221 1.18251 1.22457 1.21815 1.18431 0.86657 0.84349 0.76059 1.90817 1.16057 1.87639 1.50548 1.20090 0.99412 0.92095 1.00495 1.21957 0.89289 0.99095 0.94734 1.21106 1.00993 0.90638 0.98099 1.20823 0.91862 1.01853 0.92416 1.21668 1.00698 0.88955 0.98406 1.72234 1.18840 1.36631 1.17840 1.78385 1.14212 0.91370 1.28158 1.71967 1.27745 1.30450 1.17554 1.22378 0.91622 0.96686 0.96825 0.88553 0.89967 0.89566 0.88968 0.92719 0.92191 0.92059 0.95453 0.96046 0.94456 0.80403 0.78583 0.81204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.95 9.05 127.77 1.16 2.11 16 2 N -0.60 -16.95 2.80 -850.80 -2.38 -19.33 16 3 C 0.13 4.77 5.41 86.38 0.47 5.24 16 4 C 0.14 5.85 4.58 45.09 0.21 6.06 16 5 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 6 C -0.13 -5.99 7.31 31.26 0.23 -5.76 16 7 C 0.16 8.76 7.38 86.48 0.64 9.39 16 8 N -0.63 -34.15 3.57 -694.03 -2.48 -36.62 16 9 C -0.23 -13.15 10.51 84.04 0.88 -12.26 16 10 H 0.09 4.90 7.83 -2.91 -0.02 4.88 16 11 C -0.07 -4.43 5.50 84.86 0.47 -3.96 16 12 N -0.96 -61.38 11.55 21.65 0.25 -61.13 16 13 Si 0.98 47.45 29.55 68.60 2.03 49.48 16 14 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 15 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 16 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 17 C 0.56 18.46 6.84 86.63 0.59 19.05 16 18 O -0.57 -25.66 15.31 -4.10 -0.06 -25.72 16 19 C -0.11 -2.75 5.14 -18.49 -0.09 -2.84 16 20 C -0.03 -0.32 7.68 22.45 0.17 -0.15 16 21 C -0.08 -0.55 9.82 21.80 0.21 -0.33 16 22 C -0.05 -0.52 10.03 22.49 0.23 -0.30 16 23 C 0.06 1.34 7.17 41.93 0.30 1.64 16 24 N -0.60 -13.41 11.45 -72.90 -0.83 -14.24 16 25 S 0.83 18.13 23.60 -56.49 -1.33 16.80 16 26 N -0.63 -19.81 11.42 -69.92 -0.80 -20.60 16 27 C 0.09 2.41 7.12 43.55 0.31 2.72 16 28 H 0.10 0.76 7.06 -2.38 -0.02 0.74 16 29 H 0.08 1.22 8.04 -2.39 -0.02 1.20 16 30 H 0.09 1.07 6.19 -2.39 -0.01 1.06 16 31 H 0.09 2.93 8.11 -2.38 -0.02 2.92 16 32 H 0.05 2.46 7.21 -2.39 -0.02 2.45 16 33 H 0.06 3.06 6.86 -2.39 -0.02 3.04 16 34 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.03 1.65 7.44 -2.39 -0.02 1.63 16 36 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.25 15.28 8.31 -92.72 -0.77 14.51 16 38 H 0.18 1.01 6.13 -2.91 -0.02 0.99 16 39 H 0.20 -0.67 8.06 -2.91 -0.02 -0.69 16 40 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -90.19 347.80 1.24 -88.95 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: 1.08 Total: 1.81 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: 5.77 Total: 20.61 kcal Atomic # 7 Polarization: -145.69 SS G_CDS: -6.24 Total: -151.93 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.06 Total: -25.72 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Atomic # 16 Polarization: 18.13 SS G_CDS: -1.33 Total: 16.80 kcal Total: -90.19 1.24 -88.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085901401.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.847 kcal (2) G-P(sol) polarization free energy of solvation -90.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds