Wall clock time and date at job start Tue Mar 31 2020 16:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 119.99625 * 2 1 4 4 S 1.71193 * 120.00301 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99838 * 179.97438 * 3 2 1 6 6 C 1.46498 * 119.99946 * 359.97438 * 5 3 2 7 7 N 1.40101 * 120.00116 * 180.02562 * 5 3 2 8 8 C 1.34777 * 119.99627 * 255.00186 * 7 5 3 9 9 O 1.21669 * 120.00030 * 4.69617 * 8 7 5 10 10 C 1.46884 * 119.99613 * 184.69876 * 8 7 5 11 11 C 1.36128 * 125.43447 * 173.58907 * 10 8 7 12 12 C 1.41700 * 107.74668 * 180.23522 * 11 10 8 13 13 C 1.40023 * 133.35262 * 179.77678 * 12 11 10 14 14 C 1.36573 * 119.83632 * 180.02562 * 13 12 11 15 15 C 1.38864 * 120.59588 * 359.96039 * 14 13 12 16 16 C 1.37839 * 120.63247 * 0.02562 * 15 14 13 17 17 C 1.39087 * 119.81567 * 0.02562 * 16 15 14 18 18 N 1.37837 * 133.16033 * 179.97438 * 17 16 15 19 19 C 1.36892 * 125.62262 * 359.97201 * 18 17 16 20 20 H 1.08006 * 119.99782 * 137.93737 * 19 18 17 21 21 C 1.39011 * 120.00072 * 317.93675 * 19 18 17 22 22 N 1.31346 * 119.99840 * 341.77705 * 21 19 18 23 23 Si 1.86801 * 119.99790 * 161.50040 * 21 19 18 24 24 H 1.48500 * 109.46681 * 240.27502 * 23 21 19 25 25 H 1.48496 * 109.47369 * 0.27250 * 23 21 19 26 26 H 1.48503 * 109.46838 * 120.27663 * 23 21 19 27 27 H 1.08994 * 109.47636 * 299.99757 * 1 2 3 28 28 H 1.09003 * 109.47334 * 60.00371 * 1 2 3 29 29 H 1.09001 * 109.46978 * 179.97438 * 1 2 3 30 30 H 0.96997 * 120.00204 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47571 * 270.00424 * 6 5 3 32 32 H 1.09004 * 109.47004 * 30.00239 * 6 5 3 33 33 H 1.08994 * 109.47310 * 149.99738 * 6 5 3 34 34 H 0.96991 * 119.99899 * 74.99960 * 7 5 3 35 35 H 1.07996 * 126.12972 * 359.97438 * 11 10 8 36 36 H 1.08006 * 120.08139 * 0.02562 * 13 12 11 37 37 H 1.07994 * 119.70411 * 179.97438 * 14 13 12 38 38 H 1.08001 * 119.68312 * 180.02562 * 15 14 13 39 39 H 1.08010 * 120.09115 * 179.97438 * 16 15 14 40 40 H 0.97002 * 120.00105 * 353.66602 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 16 1.2828 2.6498 -0.0007 5 7 3.4866 1.1673 0.0005 6 6 4.2191 -0.1014 0.0017 7 7 4.1871 2.3806 0.0011 8 6 4.7860 2.8134 -1.1261 9 8 4.6474 2.1949 -2.1647 10 6 5.6062 4.0317 -1.1006 11 6 6.3572 4.4993 -2.1352 12 6 6.9949 5.6886 -1.7031 13 6 7.8737 6.5870 -2.3205 14 6 8.3319 7.6725 -1.6299 15 6 7.9335 7.8955 -0.3184 16 6 7.0690 7.0255 0.3106 17 6 6.5899 5.9124 -0.3721 18 7 5.7371 4.8873 -0.0231 19 6 5.1242 4.7387 1.1919 20 1 4.0890 4.4347 1.2409 21 6 5.8342 4.9792 2.3626 22 7 7.1474 4.9950 2.3427 23 14 4.9204 5.2874 3.9625 24 1 5.2709 6.6341 4.4810 25 1 3.4574 5.2164 3.7185 26 1 5.3068 4.2570 4.9596 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9500 -0.8400 0.0004 31 1 4.4004 -0.4154 1.0296 32 1 3.6303 -0.8614 -0.5120 33 1 5.1717 0.0286 -0.5119 34 1 4.2410 2.9091 0.8126 35 1 6.4534 4.0431 -3.1094 36 1 8.1885 6.4219 -3.3404 37 1 9.0099 8.3638 -2.1080 38 1 8.3046 8.7589 0.2138 39 1 6.7652 7.2072 1.3310 40 1 7.6232 4.7490 1.5340 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141838126.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:19 Heat of formation + Delta-G solvation = 93.480757 kcal Electronic energy + Delta-G solvation = -26371.119043 eV Core-core repulsion = 22700.668856 eV Total energy + Delta-G solvation = -3670.450187 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.85274 -39.77009 -38.12695 -36.17837 -35.69296 -33.91082 -32.01777 -30.68511 -29.13002 -28.53758 -28.19959 -26.32841 -24.89101 -23.59950 -22.08658 -21.14744 -20.46957 -19.73548 -19.13433 -18.41435 -17.87254 -16.83885 -15.77817 -15.65061 -15.26722 -15.12233 -14.86004 -14.62608 -14.31682 -14.13282 -13.87705 -13.55508 -13.25958 -13.12626 -13.02748 -12.67408 -12.44661 -12.22559 -11.91432 -11.77658 -11.22288 -10.96490 -10.90628 -10.61925 -10.50094 -10.41567 -9.97896 -9.95320 -9.49430 -9.27162 -8.96050 -8.88638 -7.63572 -7.63103 -7.24106 -7.13459 -6.84881 -4.79432 1.38973 1.53958 1.64146 2.28509 2.55415 2.84804 3.06586 3.08704 3.10898 3.28683 3.76053 4.01384 4.13887 4.26528 4.59174 4.71169 4.82627 4.85257 4.99612 5.29429 5.34537 5.48318 5.62129 5.66886 5.79069 5.96234 6.04267 6.19281 6.22208 6.33526 6.45947 6.65772 6.82219 6.90505 7.04289 7.15740 7.21155 7.31624 7.41665 7.49788 7.63420 7.70874 7.82955 8.08309 8.53654 8.69689 8.97608 9.98143 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.004656 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.813457 B = 6011.756598 C = 7295.023815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.689 5.689 3 C 0.558 3.442 4 S -0.623 6.623 5 N -0.374 5.374 6 C 0.072 3.928 7 N -0.494 5.494 8 C 0.607 3.393 9 O -0.542 6.542 10 C -0.015 4.015 11 C -0.157 4.157 12 C -0.127 4.127 13 C -0.080 4.080 14 C -0.158 4.158 15 C -0.133 4.133 16 C -0.079 4.079 17 C 0.072 3.928 18 N -0.262 5.262 19 C -0.449 4.449 20 H 0.113 0.887 21 C 0.032 3.968 22 N -0.818 5.818 23 Si 1.075 2.925 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.277 1.277 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.397 0.603 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.439 0.561 35 H 0.136 0.864 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.685 -9.651 0.036 10.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.323 5.323 3 C 0.201 3.799 4 S -0.496 6.496 5 N -0.172 5.172 6 C -0.073 4.073 7 N -0.255 5.255 8 C 0.397 3.603 9 O -0.418 6.418 10 C -0.131 4.131 11 C -0.185 4.185 12 C -0.132 4.132 13 C -0.099 4.099 14 C -0.177 4.177 15 C -0.153 4.153 16 C -0.099 4.099 17 C -0.042 4.042 18 N 0.074 4.926 19 C -0.576 4.576 20 H 0.130 0.870 21 C -0.185 4.185 22 N -0.443 5.443 23 Si 0.897 3.103 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.203 1.203 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.234 0.766 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.296 0.704 35 H 0.153 0.847 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.138 0.862 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.292 -8.895 1.281 9.959 hybrid contribution 0.513 -1.421 -1.277 1.978 sum -3.779 -10.317 0.004 10.987 Atomic orbital electron populations 1.21874 0.75744 1.02412 1.04856 1.44847 1.08940 1.05249 1.73220 1.22539 0.83874 0.92734 0.80740 1.93515 1.66988 1.16530 1.72537 1.45458 1.00697 1.00517 1.70517 1.22286 0.99181 0.82674 1.03150 1.46509 1.49642 1.13017 1.16313 1.17628 0.77497 0.83116 0.82072 1.90745 1.62799 1.57628 1.30617 1.19763 1.07038 0.94026 0.92312 1.20370 1.01927 0.97836 0.98359 1.17966 1.03170 0.97946 0.94139 1.20123 0.97147 0.94104 0.98522 1.20350 1.03209 0.98818 0.95326 1.20629 0.99845 0.99643 0.95229 1.20220 0.97749 0.92628 0.99322 1.18395 0.99788 0.91978 0.94051 1.40159 1.30313 1.13179 1.08927 1.20741 0.98461 1.56170 0.82275 0.87012 1.26885 0.95817 0.93009 1.02805 1.70568 1.07315 1.33232 1.33212 0.83405 0.75566 0.78394 0.72893 1.19569 1.19508 1.20265 0.90246 0.90350 0.90226 0.76582 0.90579 0.90234 0.88741 0.70352 0.84652 0.87360 0.87463 0.87123 0.86217 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.84 10.16 59.85 0.61 1.45 16 2 N -0.69 -7.39 5.58 -68.84 -0.38 -7.78 16 3 C 0.56 9.07 7.78 -86.91 -0.68 8.40 16 4 S -0.62 -13.15 28.45 -107.50 -3.06 -16.21 16 5 N -0.37 -6.11 3.14 -68.84 -0.22 -6.32 16 6 C 0.07 0.80 10.37 59.85 0.62 1.42 16 7 N -0.49 -9.98 4.93 30.31 0.15 -9.83 16 8 C 0.61 13.69 7.74 -12.76 -0.10 13.59 16 9 O -0.54 -12.78 17.14 5.22 0.09 -12.69 16 10 C -0.02 -0.36 6.77 -82.25 -0.56 -0.92 16 11 C -0.16 -3.56 10.55 -39.02 -0.41 -3.97 16 12 C -0.13 -2.88 6.16 -106.89 -0.66 -3.54 16 13 C -0.08 -1.56 10.06 -39.51 -0.40 -1.96 16 14 C -0.16 -2.89 9.97 -39.95 -0.40 -3.28 16 15 C -0.13 -2.59 10.02 -39.50 -0.40 -2.98 16 16 C -0.08 -1.79 8.57 -39.41 -0.34 -2.13 16 17 C 0.07 1.75 5.42 -83.84 -0.45 1.29 16 18 N -0.26 -6.42 2.57 -56.08 -0.14 -6.56 16 19 C -0.45 -10.82 7.79 -15.01 -0.12 -10.93 16 20 H 0.11 2.73 6.28 -52.48 -0.33 2.40 16 21 C 0.03 0.75 4.40 -17.47 -0.08 0.67 16 22 N -0.82 -20.27 12.00 55.50 0.67 -19.61 16 23 Si 1.08 20.79 29.96 -169.99 -5.09 15.70 16 24 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 25 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 26 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 27 H 0.08 0.79 7.99 -51.93 -0.42 0.37 16 28 H 0.08 0.82 7.99 -51.93 -0.41 0.41 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.40 2.84 6.56 -40.82 -0.27 2.57 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.60 6.36 -51.93 -0.33 0.27 16 33 H 0.09 1.16 8.09 -51.93 -0.42 0.74 16 34 H 0.44 9.33 4.60 -182.60 -0.84 8.49 16 35 H 0.14 2.81 8.06 -52.49 -0.42 2.38 16 36 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 37 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 38 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.12 2.80 6.77 -52.48 -0.36 2.44 16 40 H 0.29 7.62 6.92 -40.82 -0.28 7.34 16 LS Contribution 350.94 15.07 5.29 5.29 Total: -1.00 -32.61 350.94 -11.04 -43.65 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -4.99 Total: 17.26 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -3.35 Total: -2.90 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.07 Total: -50.10 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.09 Total: 15.70 kcal Atomic # 16 Polarization: -13.15 SS G_CDS: -3.06 Total: -16.21 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.61 -11.04 -43.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141838126.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.131 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds