Wall clock time and date at job start Tue Mar 31 2020 16:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 119.99625 * 2 1 4 4 S 1.71193 * 120.00301 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99838 * 179.97438 * 3 2 1 6 6 C 1.46498 * 119.99946 * 359.97438 * 5 3 2 7 7 N 1.40101 * 120.00116 * 180.02562 * 5 3 2 8 8 C 1.34777 * 119.99627 * 255.00186 * 7 5 3 9 9 O 1.21669 * 120.00030 * 4.69617 * 8 7 5 10 10 C 1.46884 * 119.99613 * 184.69876 * 8 7 5 11 11 C 1.36128 * 125.43447 * 173.58907 * 10 8 7 12 12 C 1.41700 * 107.74668 * 180.23522 * 11 10 8 13 13 C 1.40023 * 133.35262 * 179.77678 * 12 11 10 14 14 C 1.36573 * 119.83632 * 180.02562 * 13 12 11 15 15 C 1.38864 * 120.59588 * 359.96039 * 14 13 12 16 16 C 1.37839 * 120.63247 * 0.02562 * 15 14 13 17 17 C 1.39087 * 119.81567 * 0.02562 * 16 15 14 18 18 N 1.37837 * 133.16033 * 179.97438 * 17 16 15 19 19 C 1.36892 * 125.62262 * 359.97201 * 18 17 16 20 20 H 1.08006 * 119.99782 * 137.93737 * 19 18 17 21 21 C 1.39011 * 120.00072 * 317.93675 * 19 18 17 22 22 N 1.31346 * 119.99840 * 341.77705 * 21 19 18 23 23 Si 1.86801 * 119.99790 * 161.50040 * 21 19 18 24 24 H 1.48500 * 109.46681 * 240.27502 * 23 21 19 25 25 H 1.48496 * 109.47369 * 0.27250 * 23 21 19 26 26 H 1.48503 * 109.46838 * 120.27663 * 23 21 19 27 27 H 1.08994 * 109.47636 * 299.99757 * 1 2 3 28 28 H 1.09003 * 109.47334 * 60.00371 * 1 2 3 29 29 H 1.09001 * 109.46978 * 179.97438 * 1 2 3 30 30 H 0.96997 * 120.00204 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47571 * 270.00424 * 6 5 3 32 32 H 1.09004 * 109.47004 * 30.00239 * 6 5 3 33 33 H 1.08994 * 109.47310 * 149.99738 * 6 5 3 34 34 H 0.96991 * 119.99899 * 74.99960 * 7 5 3 35 35 H 1.07996 * 126.12972 * 359.97438 * 11 10 8 36 36 H 1.08006 * 120.08139 * 0.02562 * 13 12 11 37 37 H 1.07994 * 119.70411 * 179.97438 * 14 13 12 38 38 H 1.08001 * 119.68312 * 180.02562 * 15 14 13 39 39 H 1.08010 * 120.09115 * 179.97438 * 16 15 14 40 40 H 0.97002 * 120.00105 * 353.66602 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 16 1.2828 2.6498 -0.0007 5 7 3.4866 1.1673 0.0005 6 6 4.2191 -0.1014 0.0017 7 7 4.1871 2.3806 0.0011 8 6 4.7860 2.8134 -1.1261 9 8 4.6474 2.1949 -2.1647 10 6 5.6062 4.0317 -1.1006 11 6 6.3572 4.4993 -2.1352 12 6 6.9949 5.6886 -1.7031 13 6 7.8737 6.5870 -2.3205 14 6 8.3319 7.6725 -1.6299 15 6 7.9335 7.8955 -0.3184 16 6 7.0690 7.0255 0.3106 17 6 6.5899 5.9124 -0.3721 18 7 5.7371 4.8873 -0.0231 19 6 5.1242 4.7387 1.1919 20 1 4.0890 4.4347 1.2409 21 6 5.8342 4.9792 2.3626 22 7 7.1474 4.9950 2.3427 23 14 4.9204 5.2874 3.9625 24 1 5.2709 6.6341 4.4810 25 1 3.4574 5.2164 3.7185 26 1 5.3068 4.2570 4.9596 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9500 -0.8400 0.0004 31 1 4.4004 -0.4154 1.0296 32 1 3.6303 -0.8614 -0.5120 33 1 5.1717 0.0286 -0.5119 34 1 4.2410 2.9091 0.8126 35 1 6.4534 4.0431 -3.1094 36 1 8.1885 6.4219 -3.3404 37 1 9.0099 8.3638 -2.1080 38 1 8.3046 8.7589 0.2138 39 1 6.7652 7.2072 1.3310 40 1 7.6232 4.7490 1.5340 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141838126.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:19 Heat of formation + Delta-G solvation = 73.807289 kcal Electronic energy + Delta-G solvation = -26371.972148 eV Core-core repulsion = 22700.668856 eV Total energy + Delta-G solvation = -3671.303293 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.54810 -41.22235 -39.60259 -37.81433 -37.01511 -35.65786 -33.45811 -32.39357 -30.75691 -29.87832 -29.53966 -27.41260 -26.67657 -25.09347 -23.41180 -22.82532 -22.06399 -21.44710 -20.65836 -19.89674 -19.17240 -18.47885 -17.52396 -16.94062 -16.83605 -16.50518 -16.22310 -16.07755 -15.80461 -15.72915 -15.26489 -14.91460 -14.80013 -14.73226 -14.38681 -13.93625 -13.86203 -13.55927 -13.22094 -12.87253 -12.78087 -12.50301 -12.38467 -12.24191 -12.16896 -11.99308 -11.64511 -11.58203 -11.05651 -11.00333 -10.60191 -10.17303 -9.43346 -9.19446 -8.91599 -8.84113 -8.57038 -6.64770 -0.11103 0.05678 0.28674 0.82800 0.93963 1.15534 1.46791 1.50800 1.75857 2.09061 2.13024 2.27579 2.51339 2.70389 2.88770 3.17530 3.68307 3.91464 4.06583 4.13513 4.24986 4.32283 4.38296 4.45042 4.55650 4.59847 4.66294 4.81648 4.82715 4.99386 5.02306 5.13806 5.15929 5.25595 5.38081 5.63223 5.66007 5.72729 5.81851 5.92442 6.01488 6.10816 6.16967 6.39274 6.77397 6.99617 7.19185 8.09843 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.004656 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.813457 B = 6011.756598 C = 7295.023815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.652 5.652 3 C 0.575 3.425 4 S -0.735 6.735 5 N -0.373 5.373 6 C 0.062 3.938 7 N -0.497 5.497 8 C 0.606 3.394 9 O -0.560 6.560 10 C -0.043 4.043 11 C -0.161 4.161 12 C -0.146 4.146 13 C -0.081 4.081 14 C -0.150 4.150 15 C -0.117 4.117 16 C -0.114 4.114 17 C 0.049 3.951 18 N -0.279 5.279 19 C -0.459 4.459 20 H 0.100 0.900 21 C 0.008 3.992 22 N -0.833 5.833 23 Si 1.116 2.884 24 H -0.265 1.265 25 H -0.272 1.272 26 H -0.262 1.262 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.135 0.865 30 H 0.422 0.578 31 H 0.108 0.892 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.435 0.565 35 H 0.150 0.850 36 H 0.141 0.859 37 H 0.153 0.847 38 H 0.142 0.858 39 H 0.101 0.899 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.926 -10.983 -0.174 11.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.284 5.284 3 C 0.212 3.788 4 S -0.609 6.609 5 N -0.172 5.172 6 C -0.081 4.081 7 N -0.254 5.254 8 C 0.396 3.604 9 O -0.439 6.439 10 C -0.159 4.159 11 C -0.189 4.189 12 C -0.151 4.151 13 C -0.099 4.099 14 C -0.169 4.169 15 C -0.137 4.137 16 C -0.134 4.134 17 C -0.065 4.065 18 N 0.056 4.944 19 C -0.586 4.586 20 H 0.117 0.883 21 C -0.204 4.204 22 N -0.459 5.459 23 Si 0.934 3.066 24 H -0.189 1.189 25 H -0.197 1.197 26 H -0.187 1.187 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.153 0.847 30 H 0.264 0.736 31 H 0.126 0.874 32 H 0.139 0.861 33 H 0.100 0.900 34 H 0.290 0.710 35 H 0.168 0.832 36 H 0.159 0.841 37 H 0.171 0.829 38 H 0.160 0.840 39 H 0.119 0.881 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.529 -10.308 1.074 10.948 hybrid contribution 0.320 -1.100 -1.325 1.752 sum -3.209 -11.408 -0.251 11.854 Atomic orbital electron populations 1.22149 0.74056 1.05571 1.03582 1.44889 1.09853 1.04274 1.69406 1.22027 0.83583 0.92686 0.80481 1.93732 1.68566 1.21173 1.77469 1.45773 1.00879 1.00388 1.70183 1.22748 0.98932 0.80675 1.05747 1.46220 1.49214 1.14780 1.15203 1.17527 0.77611 0.82862 0.82371 1.90702 1.63838 1.58204 1.31113 1.20151 1.08057 0.94943 0.92736 1.20655 1.01586 0.98017 0.98657 1.18351 1.04200 0.98639 0.93913 1.20570 0.95828 0.93482 1.00058 1.20843 1.02716 0.98769 0.94548 1.21101 0.97521 0.99227 0.95891 1.20280 1.00224 0.93822 0.99064 1.18861 0.99980 0.92450 0.95173 1.40265 1.31202 1.13839 1.09129 1.20732 0.97974 1.56977 0.82892 0.88320 1.27987 0.95715 0.91839 1.04862 1.70660 1.07884 1.35259 1.32113 0.82901 0.74466 0.78891 0.70338 1.18940 1.19660 1.18673 0.91238 0.91972 0.84677 0.73602 0.87379 0.86056 0.90005 0.70990 0.83241 0.84082 0.82914 0.83978 0.88065 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.37 10.16 127.77 1.30 2.66 16 2 N -0.65 -12.15 5.58 -371.70 -2.07 -14.22 16 3 C 0.58 18.33 7.78 179.05 1.39 19.72 16 4 S -0.74 -32.48 28.45 -56.49 -1.61 -34.08 16 5 N -0.37 -11.98 3.14 -371.70 -1.17 -13.14 16 6 C 0.06 1.20 10.37 127.77 1.32 2.52 16 7 N -0.50 -20.77 4.93 -176.25 -0.87 -21.64 16 8 C 0.61 28.43 7.74 86.51 0.67 29.10 16 9 O -0.56 -27.05 17.14 -4.25 -0.07 -27.12 16 10 C -0.04 -2.16 6.77 39.91 0.27 -1.89 16 11 C -0.16 -7.48 10.55 22.63 0.24 -7.24 16 12 C -0.15 -6.65 6.16 -21.34 -0.13 -6.78 16 13 C -0.08 -2.97 10.06 22.31 0.22 -2.74 16 14 C -0.15 -4.98 9.97 22.03 0.22 -4.76 16 15 C -0.12 -4.34 10.02 22.32 0.22 -4.12 16 16 C -0.11 -5.22 8.57 22.38 0.19 -5.03 16 17 C 0.05 2.46 5.42 39.06 0.21 2.67 16 18 N -0.28 -14.39 2.57 -331.34 -0.85 -15.24 16 19 C -0.46 -23.32 7.79 84.09 0.65 -22.66 16 20 H 0.10 5.17 6.28 -2.91 -0.02 5.15 16 21 C 0.01 0.40 4.40 84.95 0.37 0.77 16 22 N -0.83 -42.75 12.00 21.67 0.26 -42.49 16 23 Si 1.12 43.00 29.96 68.60 2.06 45.05 16 24 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 25 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 26 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 27 H 0.07 1.30 7.99 -2.39 -0.02 1.28 16 28 H 0.06 1.24 7.99 -2.39 -0.02 1.22 16 29 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.42 4.05 6.56 -92.71 -0.61 3.44 16 31 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.12 1.31 6.36 -2.38 -0.02 1.29 16 33 H 0.08 1.90 8.09 -2.39 -0.02 1.88 16 34 H 0.43 19.44 4.60 -213.33 -0.98 18.46 16 35 H 0.15 6.28 8.06 -2.91 -0.02 6.26 16 36 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 37 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 38 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 39 H 0.10 4.93 6.77 -2.91 -0.02 4.91 16 40 H 0.27 14.99 6.92 -92.71 -0.64 14.35 16 Total: -1.00 -78.28 350.94 2.48 -75.80 By element: Atomic # 1 Polarization: 45.21 SS G_CDS: -0.35 Total: 44.86 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 7.16 Total: 2.23 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -4.70 Total: -106.73 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.07 Total: -27.12 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.06 Total: 45.05 kcal Atomic # 16 Polarization: -32.48 SS G_CDS: -1.61 Total: -34.08 kcal Total: -78.28 2.48 -75.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141838126.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.607 kcal (2) G-P(sol) polarization free energy of solvation -78.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds