Wall clock time and date at job start Tue Mar 31 2020 16:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35960 * 116.99915 * 2 1 4 4 C 1.39411 * 119.82553 * 359.97438 * 3 2 1 5 5 C 1.38092 * 120.56979 * 180.02562 * 4 3 2 6 6 C 1.38718 * 120.20513 * 0.02562 * 5 4 3 7 7 N 1.38852 * 120.18103 * 179.97438 * 6 5 4 8 8 C 1.46497 * 120.00165 * 359.97438 * 7 6 5 9 9 C 1.53002 * 109.47333 * 179.97438 * 8 7 6 10 10 N 1.46497 * 109.47333 * 180.02562 * 9 8 7 11 11 C 1.34774 * 119.99910 * 179.97438 * 10 9 8 12 12 O 1.21279 * 120.00286 * 0.02562 * 11 10 9 13 13 C 1.50702 * 120.00097 * 180.02562 * 11 10 9 14 14 F 1.39898 * 109.47263 * 179.97438 * 13 11 10 15 15 F 1.39899 * 109.46876 * 299.99753 * 13 11 10 16 16 F 1.39899 * 109.47406 * 59.99656 * 13 11 10 17 17 C 1.41538 * 119.63433 * 359.97438 * 6 5 4 18 18 C 1.41023 * 120.27822 * 180.02562 * 17 6 5 19 19 H 1.08004 * 120.00032 * 333.59022 * 18 17 6 20 20 C 1.39901 * 120.00245 * 153.86775 * 18 17 6 21 21 N 1.30889 * 120.00021 * 343.82680 * 20 18 17 22 22 Si 1.86803 * 119.99831 * 163.82807 * 20 18 17 23 23 H 1.48502 * 109.47374 * 60.00306 * 22 20 18 24 24 H 1.48502 * 109.46964 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47293 * 299.99987 * 22 20 18 26 26 C 1.37847 * 119.81398 * 180.30271 * 3 2 1 27 27 H 1.08992 * 109.47485 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47386 * 300.00378 * 1 2 3 29 29 H 1.09002 * 109.47179 * 59.99810 * 1 2 3 30 30 H 1.08000 * 119.71401 * 0.02562 * 4 3 2 31 31 H 1.08009 * 119.89720 * 180.02562 * 5 4 3 32 32 H 0.96999 * 119.99686 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.47257 * 300.00168 * 8 7 6 34 34 H 1.09004 * 109.47360 * 60.00083 * 8 7 6 35 35 H 1.09000 * 109.47124 * 300.00295 * 9 8 7 36 36 H 1.09004 * 109.46791 * 59.99782 * 9 8 7 37 37 H 0.96999 * 120.00149 * 0.02562 * 10 9 8 38 38 H 0.96999 * 119.99915 * 179.97438 * 21 20 18 39 39 H 1.07993 * 120.10902 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2834 2.3783 -0.0005 5 6 1.8943 3.6167 -0.0011 6 6 3.2781 3.7123 -0.0016 7 7 3.8919 4.9578 -0.0027 8 6 3.0776 6.1757 -0.0038 9 6 3.9932 7.4015 -0.0042 10 7 3.1790 8.6193 -0.0048 11 6 3.7747 9.8282 -0.0046 12 8 4.9849 9.9079 -0.0046 13 6 2.9371 11.0810 -0.0046 14 9 3.7744 12.2018 -0.0039 15 9 2.1298 11.1022 -1.1469 16 9 2.1295 11.1021 1.1376 17 6 4.0611 2.5332 -0.0011 18 6 5.4690 2.6145 -0.0011 19 1 5.9598 3.4818 -0.4175 20 6 6.2301 1.5692 0.5330 21 7 5.6651 0.6770 1.3063 22 14 8.0528 1.4469 0.1426 23 1 8.7440 2.6726 0.6170 24 1 8.6264 0.2591 0.8248 25 1 8.2367 1.3112 -1.3247 26 6 3.4230 1.2791 -0.0063 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 0.2054 2.3131 -0.0005 31 1 1.2927 4.5138 -0.0011 32 1 4.8597 5.0215 -0.0027 33 1 2.4485 6.1913 -0.8938 34 1 2.4484 6.1929 0.8861 35 1 4.6220 7.3856 0.8860 36 1 4.6227 7.3844 -0.8940 37 1 2.2111 8.5556 -0.0044 38 1 6.1927 -0.0480 1.6763 39 1 4.0100 0.3726 -0.0108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164246239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:19 Heat of formation + Delta-G solvation = -196.327008 kcal Electronic energy + Delta-G solvation = -27558.031476 eV Core-core repulsion = 22858.111919 eV Total energy + Delta-G solvation = -4699.919557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.69261 -48.22137 -48.17449 -40.22030 -38.75455 -37.27629 -35.92208 -34.07194 -33.18634 -30.23366 -29.65359 -28.22665 -27.03052 -25.54635 -24.97943 -23.12855 -21.85748 -20.82467 -20.09020 -19.44007 -19.14658 -18.97450 -17.67316 -16.72138 -16.39144 -16.02892 -15.95409 -15.35404 -15.07053 -14.92374 -14.87604 -14.75096 -14.68054 -14.58491 -14.40577 -14.30008 -14.28494 -14.07811 -13.63071 -13.22160 -12.67793 -12.46869 -12.15214 -11.74148 -11.62455 -11.48706 -11.31047 -11.13551 -11.05354 -10.80860 -10.57814 -10.27512 -10.04071 -9.73859 -9.43619 -9.14835 -8.49194 -7.46251 -6.76708 -6.08800 -4.26111 1.41208 1.49163 2.67027 2.76862 3.08020 3.09276 3.11279 3.21252 3.26790 3.67644 3.73767 3.93746 4.36090 4.47233 4.64358 4.73694 4.98991 5.35433 5.54946 5.59768 5.71506 5.77982 5.88112 5.91741 5.94172 6.09817 6.31787 6.55500 6.80221 6.91068 7.11922 7.16587 7.37052 7.47611 7.55927 7.83981 7.99874 8.18082 8.51249 8.68947 8.80447 8.89106 9.03478 10.22724 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.011806 B = 0.002744 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.090095 B =10201.826857 C =12309.946508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.331 6.331 3 C 0.096 3.904 4 C -0.279 4.279 5 C -0.145 4.145 6 C 0.089 3.911 7 N -0.746 5.746 8 C 0.128 3.872 9 C 0.105 3.895 10 N -0.693 5.693 11 C 0.482 3.518 12 O -0.476 6.476 13 C 0.452 3.548 14 F -0.154 7.154 15 F -0.167 7.167 16 F -0.167 7.167 17 C 0.103 3.897 18 C -0.464 4.464 19 H 0.075 0.925 20 C 0.078 3.922 21 N -0.790 5.790 22 Si 0.905 3.095 23 H -0.267 1.267 24 H -0.279 1.279 25 H -0.265 1.265 26 C -0.172 4.172 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.398 0.602 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.412 0.588 38 H 0.281 0.719 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.821 13.412 -1.813 15.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.246 6.246 3 C 0.052 3.948 4 C -0.300 4.300 5 C -0.168 4.168 6 C -0.009 4.009 7 N -0.384 5.384 8 C 0.002 3.998 9 C -0.018 4.018 10 N -0.345 5.345 11 C 0.259 3.741 12 O -0.348 6.348 13 C 0.394 3.606 14 F -0.135 7.135 15 F -0.149 7.149 16 F -0.149 7.149 17 C 0.098 3.902 18 C -0.494 4.494 19 H 0.093 0.907 20 C -0.140 4.140 21 N -0.416 5.416 22 Si 0.730 3.270 23 H -0.191 1.191 24 H -0.204 1.204 25 H -0.189 1.189 26 C -0.193 4.193 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.234 0.766 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.248 0.752 38 H 0.092 0.908 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.942 13.170 -1.658 14.543 hybrid contribution 0.148 0.344 -0.017 0.375 sum -5.794 13.513 -1.675 14.798 Atomic orbital electron populations 1.22707 0.81169 1.01622 1.00272 1.86005 1.19112 1.29127 1.90321 1.18827 0.92407 0.82423 1.01136 1.20174 0.96996 0.92145 1.20687 1.19750 0.92119 0.95712 1.09259 1.17755 0.91007 0.84692 1.07461 1.43568 1.07319 1.00885 1.86618 1.21043 0.93602 0.84141 1.01039 1.21774 0.94127 0.81630 1.04226 1.45715 1.11666 1.04941 1.72204 1.20183 0.88817 0.84486 0.80567 1.90905 1.12150 1.85177 1.46527 1.20262 0.79086 0.86523 0.74758 1.93271 1.71025 1.53169 1.96011 1.93274 1.74268 1.96801 1.50526 1.93275 1.74252 1.96798 1.50529 1.16925 0.92737 0.88448 0.92097 1.19104 0.90780 1.03806 1.35706 0.90693 1.25803 1.00768 0.94696 0.92766 1.69842 1.38358 1.11461 1.21905 0.86425 0.82262 0.78542 0.79813 1.19149 1.20399 1.18924 1.20321 0.89273 0.98601 1.11090 0.90139 0.93902 0.93945 0.88871 0.89198 0.76636 0.92786 0.92787 0.89648 0.89706 0.75211 0.90842 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.81 101.05 0.99 1.61 16 2 O -0.33 -7.30 10.49 -19.61 -0.21 -7.51 16 3 C 0.10 2.31 6.67 -39.29 -0.26 2.05 16 4 C -0.28 -6.08 9.03 -39.20 -0.35 -6.43 16 5 C -0.14 -3.04 9.28 -39.46 -0.37 -3.41 16 6 C 0.09 1.96 6.68 -83.25 -0.56 1.41 16 7 N -0.75 -13.33 5.63 -58.18 -0.33 -13.66 16 8 C 0.13 1.66 5.02 -4.04 -0.02 1.64 16 9 C 0.11 1.15 5.79 -4.04 -0.02 1.13 16 10 N -0.69 -6.28 5.56 -60.29 -0.33 -6.61 16 11 C 0.48 5.18 7.36 -10.99 -0.08 5.10 16 12 O -0.48 -6.78 16.61 5.56 0.09 -6.68 16 13 C 0.45 4.18 3.43 36.01 0.12 4.31 16 14 F -0.15 -1.63 16.92 2.25 0.04 -1.59 16 15 F -0.17 -1.44 17.30 2.25 0.04 -1.40 16 16 F -0.17 -1.45 17.30 2.25 0.04 -1.42 16 17 C 0.10 2.58 5.57 -106.65 -0.59 1.99 16 18 C -0.46 -11.47 8.48 -37.90 -0.32 -11.79 16 19 H 0.08 1.72 6.71 -52.48 -0.35 1.37 16 20 C 0.08 1.89 5.16 -17.33 -0.09 1.80 16 21 N -0.79 -20.22 10.98 55.55 0.61 -19.61 16 22 Si 0.90 18.23 29.59 -169.99 -5.03 13.20 16 23 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 26 C -0.17 -4.47 8.59 -38.79 -0.33 -4.81 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.04 0.66 7.65 -51.93 -0.40 0.26 16 29 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 30 H 0.09 1.79 6.26 -52.49 -0.33 1.46 16 31 H 0.09 1.61 6.71 -52.48 -0.35 1.26 16 32 H 0.40 7.10 6.70 -40.82 -0.27 6.82 16 33 H 0.05 0.67 7.94 -51.93 -0.41 0.26 16 34 H 0.05 0.69 7.94 -51.93 -0.41 0.27 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.41 2.66 8.47 -40.82 -0.35 2.31 16 38 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 39 H 0.13 3.48 6.24 -52.49 -0.33 3.15 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -29.26 347.56 -5.73 -34.99 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -4.00 Total: 10.47 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -1.89 Total: -5.41 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: -0.05 Total: -39.88 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.11 Total: -14.19 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.12 Total: -4.41 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.26 -5.73 -34.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164246239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.341 kcal (2) G-P(sol) polarization free energy of solvation -29.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds