Wall clock time and date at job start Tue Mar 31 2020 16:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35960 * 116.99915 * 2 1 4 4 C 1.39411 * 119.82553 * 359.97438 * 3 2 1 5 5 C 1.38092 * 120.56979 * 180.02562 * 4 3 2 6 6 C 1.38718 * 120.20513 * 0.02562 * 5 4 3 7 7 N 1.38852 * 120.18103 * 179.97438 * 6 5 4 8 8 C 1.46497 * 120.00165 * 359.97438 * 7 6 5 9 9 C 1.53002 * 109.47333 * 179.97438 * 8 7 6 10 10 N 1.46497 * 109.47333 * 180.02562 * 9 8 7 11 11 C 1.34774 * 119.99910 * 179.97438 * 10 9 8 12 12 O 1.21279 * 120.00286 * 0.02562 * 11 10 9 13 13 C 1.50702 * 120.00097 * 180.02562 * 11 10 9 14 14 F 1.39898 * 109.47263 * 179.97438 * 13 11 10 15 15 F 1.39899 * 109.46876 * 299.99753 * 13 11 10 16 16 F 1.39899 * 109.47406 * 59.99656 * 13 11 10 17 17 C 1.41538 * 119.63433 * 359.97438 * 6 5 4 18 18 C 1.41023 * 120.27822 * 180.02562 * 17 6 5 19 19 H 1.08004 * 120.00032 * 333.59022 * 18 17 6 20 20 C 1.39901 * 120.00245 * 153.86775 * 18 17 6 21 21 N 1.30889 * 120.00021 * 343.82680 * 20 18 17 22 22 Si 1.86803 * 119.99831 * 163.82807 * 20 18 17 23 23 H 1.48502 * 109.47374 * 60.00306 * 22 20 18 24 24 H 1.48502 * 109.46964 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47293 * 299.99987 * 22 20 18 26 26 C 1.37847 * 119.81398 * 180.30271 * 3 2 1 27 27 H 1.08992 * 109.47485 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47386 * 300.00378 * 1 2 3 29 29 H 1.09002 * 109.47179 * 59.99810 * 1 2 3 30 30 H 1.08000 * 119.71401 * 0.02562 * 4 3 2 31 31 H 1.08009 * 119.89720 * 180.02562 * 5 4 3 32 32 H 0.96999 * 119.99686 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.47257 * 300.00168 * 8 7 6 34 34 H 1.09004 * 109.47360 * 60.00083 * 8 7 6 35 35 H 1.09000 * 109.47124 * 300.00295 * 9 8 7 36 36 H 1.09004 * 109.46791 * 59.99782 * 9 8 7 37 37 H 0.96999 * 120.00149 * 0.02562 * 10 9 8 38 38 H 0.96999 * 119.99915 * 179.97438 * 21 20 18 39 39 H 1.07993 * 120.10902 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2834 2.3783 -0.0005 5 6 1.8943 3.6167 -0.0011 6 6 3.2781 3.7123 -0.0016 7 7 3.8919 4.9578 -0.0027 8 6 3.0776 6.1757 -0.0038 9 6 3.9932 7.4015 -0.0042 10 7 3.1790 8.6193 -0.0048 11 6 3.7747 9.8282 -0.0046 12 8 4.9849 9.9079 -0.0046 13 6 2.9371 11.0810 -0.0046 14 9 3.7744 12.2018 -0.0039 15 9 2.1298 11.1022 -1.1469 16 9 2.1295 11.1021 1.1376 17 6 4.0611 2.5332 -0.0011 18 6 5.4690 2.6145 -0.0011 19 1 5.9598 3.4818 -0.4175 20 6 6.2301 1.5692 0.5330 21 7 5.6651 0.6770 1.3063 22 14 8.0528 1.4469 0.1426 23 1 8.7440 2.6726 0.6170 24 1 8.6264 0.2591 0.8248 25 1 8.2367 1.3112 -1.3247 26 6 3.4230 1.2791 -0.0063 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 0.2054 2.3131 -0.0005 31 1 1.2927 4.5138 -0.0011 32 1 4.8597 5.0215 -0.0027 33 1 2.4485 6.1913 -0.8938 34 1 2.4484 6.1929 0.8861 35 1 4.6220 7.3856 0.8860 36 1 4.6227 7.3844 -0.8940 37 1 2.2111 8.5556 -0.0044 38 1 6.1927 -0.0480 1.6763 39 1 4.0100 0.3726 -0.0108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164246239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:18 Heat of formation + Delta-G solvation = -216.257338 kcal Electronic energy + Delta-G solvation = -27558.895720 eV Core-core repulsion = 22858.111919 eV Total energy + Delta-G solvation = -4700.783801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.44293 -48.95104 -48.93944 -41.13301 -40.40808 -38.76754 -37.09569 -35.57045 -34.75129 -31.67543 -31.16899 -29.49967 -28.19137 -27.02874 -26.63749 -24.30508 -22.73294 -22.40728 -21.67361 -20.34099 -19.88778 -19.77008 -19.39123 -18.06289 -17.68015 -17.39845 -16.94018 -16.76230 -16.34558 -16.22596 -16.03654 -15.85452 -15.69221 -15.48258 -15.37702 -15.32359 -15.04401 -15.03355 -14.86919 -14.49714 -14.31426 -13.79649 -13.74025 -13.26341 -13.09439 -12.83118 -12.73364 -12.72554 -12.58558 -12.18687 -11.82661 -11.75247 -11.68541 -11.13408 -10.93194 -10.62191 -10.01102 -9.28207 -8.56583 -7.75198 -6.09125 0.55881 0.66071 1.03086 1.35165 1.42008 1.51631 1.56868 1.88668 2.24943 2.45385 2.80308 2.87593 2.94442 2.99304 3.24759 3.68257 3.80855 4.05929 4.35556 4.45050 4.52999 4.57359 4.62052 4.65940 4.79147 4.90210 4.91172 5.11366 5.17800 5.33168 5.61862 5.75079 5.77040 5.85478 6.04538 6.24268 6.38957 6.41950 6.81545 6.99488 7.06969 7.24048 7.33683 8.45139 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.011806 B = 0.002744 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.090095 B =10201.826857 C =12309.946508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.079 3.921 4 C -0.272 4.272 5 C -0.150 4.150 6 C 0.092 3.908 7 N -0.747 5.747 8 C 0.130 3.870 9 C 0.116 3.884 10 N -0.677 5.677 11 C 0.485 3.515 12 O -0.515 6.515 13 C 0.465 3.535 14 F -0.161 7.161 15 F -0.160 7.160 16 F -0.160 7.160 17 C 0.069 3.931 18 C -0.488 4.488 19 H 0.084 0.916 20 C 0.034 3.966 21 N -0.831 5.831 22 Si 0.974 3.026 23 H -0.257 1.257 24 H -0.277 1.277 25 H -0.264 1.264 26 C -0.205 4.205 27 H 0.111 0.889 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.123 0.877 31 H 0.128 0.872 32 H 0.396 0.604 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.427 0.573 38 H 0.282 0.718 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.334 15.188 -2.164 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.034 3.966 4 C -0.292 4.292 5 C -0.174 4.174 6 C -0.008 4.008 7 N -0.383 5.383 8 C 0.004 3.996 9 C -0.007 4.007 10 N -0.330 5.330 11 C 0.263 3.737 12 O -0.389 6.389 13 C 0.407 3.593 14 F -0.142 7.142 15 F -0.141 7.141 16 F -0.142 7.142 17 C 0.064 3.936 18 C -0.518 4.518 19 H 0.102 0.898 20 C -0.179 4.179 21 N -0.458 5.458 22 Si 0.795 3.205 23 H -0.181 1.181 24 H -0.202 1.202 25 H -0.188 1.188 26 C -0.227 4.227 27 H 0.129 0.871 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.141 0.859 31 H 0.146 0.854 32 H 0.231 0.769 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.266 0.734 38 H 0.092 0.908 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.511 14.979 -2.012 16.877 hybrid contribution 0.415 -0.182 0.081 0.461 sum -7.096 14.796 -1.932 16.523 Atomic orbital electron populations 1.23066 0.78093 1.04133 1.01258 1.85957 1.22353 1.28681 1.90296 1.18950 0.92125 0.83921 1.01620 1.20552 0.98433 0.91592 1.18635 1.20147 0.91938 0.96918 1.08360 1.17884 0.91601 0.85408 1.05927 1.43678 1.07731 1.01126 1.85744 1.21197 0.93498 0.82667 1.02196 1.21521 0.93781 0.81525 1.03917 1.45536 1.12376 1.03961 1.71093 1.20360 0.88428 0.85096 0.79827 1.90896 1.13834 1.85793 1.48413 1.19868 0.78830 0.85496 0.75112 1.93260 1.71428 1.53480 1.96078 1.93295 1.73932 1.96708 1.50182 1.93295 1.73936 1.96709 1.50232 1.17264 0.93555 0.89470 0.93316 1.19402 0.91276 1.04696 1.36448 0.89817 1.26627 1.04988 0.94132 0.92202 1.69949 1.40012 1.12383 1.23447 0.85378 0.76995 0.78738 0.79340 1.18081 1.20186 1.18843 1.20275 0.90532 0.98130 1.13750 0.87112 0.93009 0.92598 0.85893 0.85416 0.76929 0.91168 0.91622 0.90276 0.89954 0.73366 0.90777 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 9.81 113.37 1.11 2.00 16 2 O -0.36 -15.87 10.49 -93.09 -0.98 -16.84 16 3 C 0.08 3.81 6.67 22.46 0.15 3.96 16 4 C -0.27 -11.33 9.03 22.52 0.20 -11.13 16 5 C -0.15 -5.93 9.28 22.35 0.21 -5.72 16 6 C 0.09 3.98 6.68 38.96 0.26 4.24 16 7 N -0.75 -25.61 5.63 -337.98 -1.90 -27.51 16 8 C 0.13 2.97 5.02 86.38 0.43 3.40 16 9 C 0.12 2.29 5.79 86.38 0.50 2.79 16 10 N -0.68 -10.45 5.56 -463.06 -2.57 -13.02 16 11 C 0.48 9.49 7.36 87.66 0.64 10.14 16 12 O -0.51 -14.14 16.61 -3.03 -0.05 -14.19 16 13 C 0.47 7.63 3.43 71.24 0.24 7.88 16 14 F -0.16 -3.19 16.92 44.97 0.76 -2.43 16 15 F -0.16 -2.35 17.30 44.97 0.78 -1.57 16 16 F -0.16 -2.39 17.30 44.97 0.78 -1.61 16 17 C 0.07 3.54 5.57 -21.18 -0.12 3.42 16 18 C -0.49 -24.84 8.48 23.36 0.20 -24.64 16 19 H 0.08 3.92 6.71 -2.91 -0.02 3.91 16 20 C 0.03 1.72 5.16 85.24 0.44 2.16 16 21 N -0.83 -44.67 10.98 21.82 0.24 -44.43 16 22 Si 0.97 38.32 29.59 68.60 2.03 40.35 16 23 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 24 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 25 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 26 C -0.21 -11.19 8.59 22.78 0.20 -10.99 16 27 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.05 1.47 7.65 -2.38 -0.02 1.45 16 29 H 0.06 1.53 7.65 -2.39 -0.02 1.52 16 30 H 0.12 4.29 6.26 -2.91 -0.02 4.28 16 31 H 0.13 4.01 6.71 -2.91 -0.02 3.99 16 32 H 0.40 13.86 6.70 -92.71 -0.62 13.24 16 33 H 0.07 1.45 7.94 -2.39 -0.02 1.43 16 34 H 0.07 1.41 7.94 -2.38 -0.02 1.39 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.43 3.99 8.47 -92.71 -0.79 3.21 16 38 H 0.28 14.01 8.30 -92.71 -0.77 13.24 16 39 H 0.09 5.60 6.24 -2.91 -0.02 5.58 16 Total: -1.00 -66.16 347.56 3.29 -62.87 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: -0.26 Total: 30.89 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 4.47 Total: -12.50 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -4.24 Total: -84.96 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -1.03 Total: -31.03 kcal Atomic # 9 Polarization: -7.94 SS G_CDS: 2.32 Total: -5.62 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -66.16 3.29 -62.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164246239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.386 kcal (2) G-P(sol) polarization free energy of solvation -66.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds