Wall clock time and date at job start Tue Mar 31 2020 16:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99607 * 2 1 4 4 C 1.50701 * 109.47437 * 293.94893 * 3 2 1 5 5 C 1.31162 * 119.99706 * 124.99576 * 4 3 2 6 6 Cl 1.73600 * 120.00136 * 0.02562 * 5 4 3 7 7 C 1.46898 * 111.00113 * 123.95054 * 2 1 3 8 8 H 1.08995 * 109.52354 * 295.96989 * 7 2 1 9 9 C 1.53046 * 109.49596 * 56.04498 * 7 2 1 10 10 C 1.53036 * 109.53712 * 181.31277 * 9 7 2 11 11 C 1.53189 * 109.31608 * 298.64183 * 10 9 7 12 12 N 1.46918 * 108.77865 * 54.63440 * 11 10 9 13 13 C 1.34775 * 120.63470 * 126.37231 * 12 11 10 14 14 O 1.21275 * 120.00279 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.99776 * 359.97438 * 13 12 11 16 16 S 1.81000 * 109.47042 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99871 * 180.02562 * 16 15 13 18 18 H 1.08009 * 120.00150 * 359.72084 * 17 16 15 19 19 C 1.38795 * 120.00161 * 180.02562 * 17 16 15 20 20 N 1.31634 * 120.00230 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00277 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47086 * 59.99722 * 21 19 17 23 23 H 1.48503 * 109.47155 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47243 * 299.99660 * 21 19 17 25 25 C 1.46927 * 118.73745 * 306.64494 * 12 11 10 26 26 H 1.08998 * 109.47257 * 296.04533 * 1 2 3 27 27 H 1.09002 * 109.47012 * 56.04687 * 1 2 3 28 28 H 1.08998 * 109.47193 * 176.04603 * 1 2 3 29 29 H 1.09000 * 109.47458 * 53.95639 * 3 2 1 30 30 H 1.09003 * 109.46704 * 173.95340 * 3 2 1 31 31 H 1.08002 * 120.00171 * 305.00932 * 4 3 2 32 32 H 1.07998 * 119.99568 * 179.97438 * 5 4 3 33 33 H 1.09007 * 109.45553 * 61.29762 * 9 7 2 34 34 H 1.08996 * 109.45060 * 301.33785 * 9 7 2 35 35 H 1.09002 * 109.49944 * 178.68519 * 10 9 7 36 36 H 1.09008 * 109.52399 * 58.61045 * 10 9 7 37 37 H 1.09005 * 109.58353 * 294.84344 * 11 10 9 38 38 H 1.09005 * 109.70207 * 174.49420 * 11 10 9 39 39 H 1.09000 * 109.46904 * 60.00309 * 15 13 12 40 40 H 1.09005 * 109.47194 * 300.00350 * 15 13 12 41 41 H 0.96991 * 120.00676 * 180.02562 * 20 19 17 42 42 H 1.08994 * 109.58817 * 173.14483 * 25 12 11 43 43 H 1.09004 * 109.58821 * 293.56766 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2985 5 6 0.9894 3.1877 -1.2873 6 17 0.5458 3.9193 0.2233 7 6 1.9955 -0.7659 1.1376 8 1 1.7060 -0.2797 2.0692 9 6 1.4262 -2.1862 1.1044 10 6 1.9483 -2.9750 2.3073 11 6 3.4757 -3.0643 2.2305 12 7 4.0237 -1.7059 2.1160 13 6 4.9670 -1.2712 2.9748 14 8 5.4110 -0.1476 2.8700 15 6 5.4692 -2.1811 4.0661 16 16 6.7206 -1.3148 5.0457 17 6 7.1219 -2.5735 6.2115 18 1 6.6225 -3.5302 6.1668 19 6 8.0752 -2.3335 7.1914 20 7 8.6798 -1.1657 7.2495 21 14 8.5011 -3.6682 8.4270 22 1 9.0173 -4.8611 7.7088 23 1 9.5405 -3.1649 9.3607 24 1 7.2846 -4.0397 9.1934 25 6 3.5193 -0.8282 1.0510 26 1 -0.3634 0.4512 0.9233 27 1 -0.3633 0.5740 -0.8525 28 1 -0.3633 -1.0252 -0.0709 29 1 1.5610 1.9274 0.8309 30 1 3.0797 1.3444 0.1083 31 1 1.9131 1.5922 -2.2382 32 1 0.7329 3.6722 -2.2178 33 1 1.7366 -2.6803 0.1837 34 1 0.3379 -2.1420 1.1436 35 1 1.5242 -3.9791 2.2959 36 1 1.6593 -2.4686 3.2284 37 1 3.7640 -3.6496 1.3573 38 1 3.8619 -3.5392 3.1325 39 1 5.9093 -3.0736 3.6212 40 1 4.6385 -2.4684 4.7107 41 1 9.3463 -0.9981 7.9339 42 1 3.9323 0.1726 1.1762 43 1 3.8113 -1.2273 0.0796 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267099410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:27 Heat of formation + Delta-G solvation = -14.937914 kcal Electronic energy + Delta-G solvation = -24007.156073 eV Core-core repulsion = 20433.111993 eV Total energy + Delta-G solvation = -3574.044080 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.23083 -38.49169 -37.12628 -36.15747 -33.62696 -32.43035 -32.16593 -30.87687 -28.67958 -27.77392 -25.52929 -25.01493 -24.23007 -22.26281 -20.46681 -20.14640 -19.10094 -17.73388 -16.89308 -16.58369 -15.89172 -15.79416 -15.26626 -15.02463 -14.82818 -14.80109 -14.27949 -13.97908 -13.70382 -13.58622 -13.29895 -13.16769 -12.69849 -12.65279 -12.53192 -12.21155 -12.05743 -11.92661 -11.73240 -11.45091 -11.12225 -11.06562 -11.03857 -11.02503 -10.89275 -10.76648 -10.58569 -9.81102 -9.42524 -9.35261 -9.05904 -8.63111 -8.50920 -8.22706 -6.50109 -6.21283 -3.92103 1.51653 2.04401 2.87886 3.04965 3.23356 3.24760 3.28832 3.52706 3.74529 4.20339 4.40953 4.48588 4.66602 4.73819 4.84810 4.92020 4.96916 5.07789 5.13632 5.15657 5.21349 5.27773 5.40667 5.42267 5.46122 5.58166 5.60691 5.68163 5.68636 5.79211 5.80645 5.82954 5.86137 5.89217 5.96148 6.09869 6.11637 6.52613 6.74181 6.82244 7.55783 7.59413 8.34994 8.55668 9.23709 10.86100 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.018107 B = 0.002472 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.962368 B =11324.616760 C =12371.634744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.530 5.530 3 C 0.058 3.942 4 C -0.123 4.123 5 C -0.116 4.116 6 Cl -0.094 7.094 7 C 0.071 3.929 8 H 0.047 0.953 9 C -0.112 4.112 10 C -0.135 4.135 11 C 0.107 3.893 12 N -0.619 5.619 13 C 0.535 3.465 14 O -0.517 6.517 15 C -0.150 4.150 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.120 3.880 26 H 0.026 0.974 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.140 0.860 32 H 0.148 0.852 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.092 0.908 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.578 0.561 -18.294 26.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.254 5.254 3 C -0.069 4.069 4 C -0.143 4.143 5 C -0.161 4.161 6 Cl -0.066 7.066 7 C -0.038 4.038 8 H 0.065 0.935 9 C -0.150 4.150 10 C -0.174 4.174 11 C -0.017 4.017 12 N -0.355 5.355 13 C 0.323 3.677 14 O -0.391 6.391 15 C -0.300 4.300 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.003 4.003 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.158 0.842 32 H 0.166 0.834 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.110 0.890 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.638 2.182 -18.643 26.452 hybrid contribution -0.631 -1.738 1.640 2.471 sum -19.270 0.444 -17.003 25.703 Atomic orbital electron populations 1.22434 0.87170 1.02279 1.00663 1.61958 1.07973 1.12571 1.42877 1.21521 1.01832 0.88613 0.94908 1.23135 0.96237 0.94477 1.00408 1.24549 1.03476 0.97830 0.90223 1.98369 1.91737 1.82841 1.33657 1.21913 0.95435 0.94531 0.91933 0.93484 1.21629 1.00211 0.94165 0.98959 1.21935 0.95627 1.00939 0.98869 1.21743 0.93379 0.83454 1.03095 1.48055 1.40889 1.14412 1.32156 1.20346 0.78078 0.87789 0.81440 1.90687 1.56571 1.20081 1.71791 1.23550 1.04815 1.02483 0.99184 1.85411 1.44518 1.20259 1.33250 1.22815 1.27351 1.01191 1.16994 0.90998 1.24990 0.95107 0.96265 0.97207 1.70006 1.25015 1.21664 1.33610 0.86230 0.78237 0.80928 0.80134 1.19920 1.20813 1.19950 1.21415 0.91892 0.96460 0.90580 0.95493 0.91378 0.90898 0.92448 0.88617 0.84202 0.83440 0.90775 0.91513 0.90311 0.91353 0.91336 0.89119 0.89214 0.89284 0.92123 0.89000 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.93 60.06 0.54 0.71 16 2 N -0.53 -4.87 4.62 -236.45 -1.09 -5.97 16 3 C 0.06 0.56 5.08 -4.97 -0.03 0.53 16 4 C -0.12 -0.92 8.57 -36.07 -0.31 -1.23 16 5 C -0.12 -0.83 10.82 28.97 0.31 -0.51 16 6 Cl -0.09 -0.87 26.96 -51.86 -1.40 -2.27 16 7 C 0.07 0.74 2.08 -67.81 -0.14 0.60 16 8 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 9 C -0.11 -0.95 4.85 -26.69 -0.13 -1.08 16 10 C -0.13 -1.19 6.08 -26.61 -0.16 -1.35 16 11 C 0.11 1.15 6.34 -3.72 -0.02 1.13 16 12 N -0.62 -8.86 2.98 -173.04 -0.52 -9.37 16 13 C 0.54 10.27 7.72 -10.98 -0.08 10.19 16 14 O -0.52 -11.90 15.27 5.56 0.08 -11.81 16 15 C -0.15 -3.05 4.50 36.01 0.16 -2.89 16 16 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 17 C -0.54 -15.23 9.50 30.94 0.29 -14.93 16 18 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 21 Si 0.92 21.38 29.55 -169.99 -5.02 16.35 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 25 C 0.12 1.51 5.31 -3.93 -0.02 1.49 16 26 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 0.49 7.17 -51.93 -0.37 0.12 16 28 H 0.07 0.50 6.21 -51.93 -0.32 0.18 16 29 H 0.06 0.62 5.98 -51.93 -0.31 0.31 16 30 H 0.10 1.01 5.96 -51.93 -0.31 0.71 16 31 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.50 6.27 -51.93 -0.33 0.18 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.00 5.93 -51.93 -0.31 0.69 16 39 H 0.09 1.69 7.94 -51.92 -0.41 1.27 16 40 H 0.09 1.68 7.70 -51.91 -0.40 1.28 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.09 1.35 5.38 -51.93 -0.28 1.07 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 367.54 15.07 5.54 5.54 Total: -1.00 -33.52 367.54 -9.96 -43.48 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -6.39 Total: -1.25 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 0.31 Total: -5.33 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: -0.87 Total: -40.84 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.40 Total: -2.27 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.52 -9.96 -43.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267099410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.543 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds