Wall clock time and date at job start Tue Mar 31 2020 16:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46900 * 111.00024 * 2 1 4 4 C 1.50706 * 109.47274 * 66.04736 * 3 2 1 5 5 C 1.31155 * 120.00368 * 124.99836 * 4 3 2 6 6 Cl 1.73599 * 120.00322 * 180.02562 * 5 4 3 7 7 C 1.46898 * 110.99946 * 236.04469 * 2 1 3 8 8 H 1.08999 * 109.49718 * 179.02355 * 7 2 1 9 9 C 1.53040 * 109.49843 * 299.11853 * 7 2 1 10 10 C 1.53039 * 109.53970 * 181.31977 * 9 7 2 11 11 C 1.53197 * 109.30913 * 298.63272 * 10 9 7 12 12 N 1.46924 * 108.77285 * 54.63700 * 11 10 9 13 13 C 1.34782 * 120.62935 * 126.41734 * 12 11 10 14 14 O 1.21281 * 119.99862 * 179.97438 * 13 12 11 15 15 C 1.50690 * 120.00044 * 359.96926 * 13 12 11 16 16 S 1.81000 * 109.47270 * 180.02562 * 15 13 12 17 17 C 1.76203 * 100.00079 * 180.02562 * 16 15 13 18 18 H 1.07994 * 119.99978 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99855 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99978 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99901 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47033 * 60.00054 * 21 19 17 23 23 H 1.48502 * 109.47047 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47163 * 299.99741 * 21 19 17 25 25 C 1.46925 * 118.73983 * 306.38851 * 12 11 10 26 26 H 1.08998 * 109.46977 * 59.99778 * 1 2 3 27 27 H 1.08993 * 109.47123 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46925 * 300.00084 * 1 2 3 29 29 H 1.08989 * 109.47367 * 306.04296 * 3 2 1 30 30 H 1.09001 * 109.46711 * 186.04311 * 3 2 1 31 31 H 1.07998 * 119.99501 * 304.99721 * 4 3 2 32 32 H 1.08005 * 119.99816 * 359.72317 * 5 4 3 33 33 H 1.09006 * 109.45875 * 301.34128 * 9 7 2 34 34 H 1.08999 * 109.46189 * 61.29369 * 9 7 2 35 35 H 1.08999 * 109.49789 * 178.68595 * 10 9 7 36 36 H 1.08994 * 109.52697 * 58.59978 * 10 9 7 37 37 H 1.08997 * 109.58612 * 294.84513 * 11 10 9 38 38 H 1.08997 * 109.70154 * 174.49251 * 11 10 9 39 39 H 1.09001 * 109.47516 * 300.00317 * 15 13 12 40 40 H 1.09003 * 109.47201 * 60.00550 * 15 13 12 41 41 H 0.96995 * 119.99909 * 180.02562 * 20 19 17 42 42 H 1.09005 * 109.58508 * 293.82020 * 25 12 11 43 43 H 1.08999 * 109.70276 * 173.47107 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2985 5 6 2.5772 2.5783 2.0428 6 17 2.1643 3.3561 3.5389 7 6 1.9955 -0.7660 -1.1376 8 1 3.0849 -0.7355 -1.1237 9 6 1.5231 -2.2183 -1.0379 10 6 2.0980 -3.0247 -2.2046 11 6 1.5871 -2.4397 -3.5251 12 7 1.9109 -1.0071 -3.5642 13 6 2.5865 -0.4840 -4.6066 14 8 2.8473 0.7002 -4.6273 15 6 3.0180 -1.3707 -5.7461 16 16 3.8971 -0.3814 -6.9808 17 6 4.2741 -1.6323 -8.1632 18 1 3.9640 -2.6518 -7.9881 19 6 4.9706 -1.3074 -9.3190 20 7 5.3490 -0.0648 -9.5321 21 14 5.3708 -2.6336 -10.5722 22 1 4.1103 -3.2397 -11.0712 23 1 6.1143 -2.0327 -11.7086 24 1 6.2055 -3.6826 -9.9333 25 6 1.4835 -0.1554 -2.4459 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.5613 1.9273 -0.8308 30 1 3.0798 1.3443 -0.1082 31 1 0.6058 2.0940 1.6160 32 1 3.6089 2.5275 1.7274 33 1 1.8654 -2.6476 -0.0962 34 1 0.4343 -2.2495 -1.0764 35 1 1.7802 -4.0639 -2.1200 36 1 3.1865 -2.9740 -2.1812 37 1 0.5072 -2.5723 -3.5899 38 1 2.0682 -2.9461 -4.3619 39 1 3.6787 -2.1513 -5.3691 40 1 2.1403 -1.8272 -6.2037 41 1 5.8353 0.1623 -10.3400 42 1 0.3951 -0.1016 -2.4227 43 1 1.8963 0.8459 -2.5680 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267099419.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:35 Heat of formation + Delta-G solvation = -17.560650 kcal Electronic energy + Delta-G solvation = -23840.982124 eV Core-core repulsion = 20266.824314 eV Total energy + Delta-G solvation = -3574.157810 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.40378 -38.54111 -37.06342 -36.28148 -33.73700 -32.45672 -32.30437 -30.57332 -28.72232 -27.57991 -25.61647 -25.08425 -24.84301 -22.30575 -20.38371 -20.23984 -19.06112 -17.74867 -16.85063 -16.60755 -16.15704 -15.79552 -15.33442 -15.06440 -14.82560 -14.63046 -14.20292 -14.04793 -13.92857 -13.76239 -13.33211 -13.06594 -12.84941 -12.68369 -12.52379 -12.40191 -12.08127 -11.86820 -11.80321 -11.41139 -11.14823 -11.10101 -11.06691 -11.05856 -11.04666 -10.79115 -10.69411 -9.84067 -9.57761 -9.39416 -9.08368 -8.97883 -8.27869 -8.25705 -6.53159 -6.23766 -3.94850 1.53277 1.98905 2.85742 2.99239 3.21636 3.23098 3.27183 3.51282 3.69431 4.17932 4.41107 4.46956 4.58236 4.70862 4.75536 4.83523 4.88403 4.96801 5.01448 5.04906 5.11261 5.23411 5.27374 5.31698 5.35857 5.51769 5.57187 5.60694 5.64736 5.72652 5.78480 5.83287 5.85369 5.93019 5.96471 6.06069 6.08140 6.43195 6.64218 6.75110 7.49425 7.56964 8.32582 8.50033 9.21297 10.83588 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.020216 B = 0.002200 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.736305 B =12726.235317 C =13721.786158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.526 5.526 3 C 0.080 3.920 4 C -0.129 4.129 5 C -0.101 4.101 6 Cl -0.098 7.098 7 C 0.071 3.929 8 H 0.090 0.910 9 C -0.110 4.110 10 C -0.135 4.135 11 C 0.106 3.894 12 N -0.616 5.616 13 C 0.535 3.465 14 O -0.518 6.518 15 C -0.150 4.150 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.081 3.919 26 H 0.033 0.967 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.147 0.853 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.064 0.936 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.341 -2.620 23.049 25.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.248 5.248 3 C -0.047 4.047 4 C -0.149 4.149 5 C -0.146 4.146 6 Cl -0.070 7.070 7 C -0.038 4.038 8 H 0.108 0.892 9 C -0.147 4.147 10 C -0.173 4.173 11 C -0.017 4.017 12 N -0.353 5.353 13 C 0.323 3.677 14 O -0.392 6.392 15 C -0.300 4.300 16 S 0.165 5.835 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.043 4.043 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.139 0.861 32 H 0.165 0.835 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.727 -0.884 23.445 25.398 hybrid contribution -0.417 -1.800 -1.411 2.325 sum -10.144 -2.684 22.034 24.405 Atomic orbital electron populations 1.22577 0.87513 1.02675 1.00990 1.62338 1.08230 1.12575 1.41697 1.21171 1.01128 0.88472 0.93970 1.23033 0.99557 0.96559 0.95741 1.24395 1.00602 1.00933 0.88642 1.98368 1.94082 1.80231 1.34323 1.22158 1.00510 0.93821 0.87346 0.89225 1.21583 1.00719 0.93545 0.98897 1.21925 1.01761 0.99457 0.94193 1.21757 1.00458 0.80704 0.98805 1.48024 1.57913 1.08851 1.20521 1.20373 0.76406 0.88579 0.82328 1.90685 1.54152 1.16249 1.78135 1.23548 1.04444 1.03009 0.99043 1.85407 1.69583 1.12645 1.15818 1.22811 1.42657 0.95943 1.06988 0.90979 1.24996 0.94928 0.96189 0.97465 1.70006 1.36266 1.17278 1.26709 0.86223 0.78608 0.80793 0.79876 1.19933 1.20800 1.19913 1.22225 0.99450 0.96388 0.86271 0.94819 0.90702 0.91224 0.92346 0.89585 0.86059 0.83546 0.90731 0.91599 0.90288 0.91055 0.91588 0.89029 0.89203 0.89270 0.92107 0.91746 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 8.57 60.07 0.51 0.59 16 2 N -0.53 -4.44 4.74 -236.19 -1.12 -5.56 16 3 C 0.08 0.67 4.85 -4.97 -0.02 0.64 16 4 C -0.13 -0.98 8.91 -36.06 -0.32 -1.31 16 5 C -0.10 -0.77 10.43 28.97 0.30 -0.47 16 6 Cl -0.10 -0.82 29.10 -51.86 -1.51 -2.33 16 7 C 0.07 0.67 2.38 -67.60 -0.16 0.51 16 8 H 0.09 0.97 8.04 -51.93 -0.42 0.56 16 9 C -0.11 -0.87 4.93 -26.69 -0.13 -1.00 16 10 C -0.13 -1.11 6.08 -26.61 -0.16 -1.27 16 11 C 0.11 1.09 6.34 -3.71 -0.02 1.07 16 12 N -0.62 -8.45 2.97 -172.78 -0.51 -8.96 16 13 C 0.54 10.00 7.72 -10.99 -0.08 9.91 16 14 O -0.52 -11.66 15.28 5.56 0.08 -11.57 16 15 C -0.15 -2.99 4.50 36.00 0.16 -2.83 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.54 -15.10 9.50 30.94 0.29 -14.80 16 18 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 19 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 21 Si 0.92 21.20 29.55 -169.99 -5.02 16.17 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 C 0.08 0.95 5.01 -3.71 -0.02 0.93 16 26 H 0.03 0.25 6.40 -51.93 -0.33 -0.08 16 27 H 0.07 0.49 6.15 -51.93 -0.32 0.17 16 28 H 0.07 0.44 6.64 -51.93 -0.34 0.10 16 29 H 0.06 0.52 7.07 -51.94 -0.37 0.15 16 30 H 0.09 0.73 7.65 -51.93 -0.40 0.33 16 31 H 0.12 0.87 6.95 -52.49 -0.36 0.50 16 32 H 0.15 0.97 7.84 -52.48 -0.41 0.55 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.48 6.41 -51.93 -0.33 0.14 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.97 5.93 -51.93 -0.31 0.67 16 39 H 0.09 1.65 7.70 -51.91 -0.40 1.25 16 40 H 0.09 1.65 7.94 -51.91 -0.41 1.24 16 41 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.06 0.69 6.21 -51.93 -0.32 0.37 16 43 H 0.09 1.27 5.92 -51.93 -0.31 0.96 16 LS Contribution 367.01 15.07 5.53 5.53 Total: -1.00 -33.13 367.01 -10.05 -43.18 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -6.27 Total: -1.30 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 0.25 Total: -6.04 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: -0.90 Total: -39.79 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.57 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.51 Total: -2.33 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.13 -10.05 -43.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267099419.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.623 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds